BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62040.2
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475132 jgi|Araly1|475132|fgenesh2_kg.2__262__AT1G62040.1 713 0.0
Ahg889976 jgi|Araly1|889976|Al_scaffold_0007_1962 333 1e-90
Ahg943233 jgi|Araly1|943233|scaffold_603777.1 331 4e-90
> Ahg475132 jgi|Araly1|475132|fgenesh2_kg.2__262__AT1G62040.1
Length=649
Score = 713 bits (386), Expect = 0.0
Identities = 463/498 (93%), Gaps = 14/498 (3%)
Strand=Plus/Plus
Query 52 TTCTTTAATCGCCATGGCTAATAGCTCTTTCAAGTTGGAACACCCACTAGAGAGGAGACA 111
|||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 125 TTCTTTAATCTCCATGGCTAATAGCTCTTTCAAGTTGGAACATCCACTGGAGAGGAGACA 184
Query 112 AATTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAGAGAG 171
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 185 AATTGAATCTTCTCGCATCAGGGACAAGTATCCAGACAGAATTCCAGTGATTGTAGAGAG 244
Query 172 AGCTGAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCT 231
||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct 245 AGCTGAAAGAAGTGATGTTCCGAATATCGATAAGAAAAAGTACCTTGTTCCGGCTGATCT 304
Query 232 AACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGC 291
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 AACTGTGGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGC 364
Query 292 TATCTTCGTCTTT-GTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCT 350
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GATCTTCGT-TTTCGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCT 423
Query 351 ATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACACCT 410
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 424 ATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAAAACACCT 483
Query 411 TTGGTTTGGTTTAAATGTGTGCCTTCCAATGCTTTTGTGCTGATGTGTATATTATATGCT 470
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 484 TTGGTTTGGTTTAA--GTGTGCCTTCCAATGCTTTTGTGCTTATGTGTATATTATGTGCT 541
Query 471 CTTTTATA-AC-ACTATGAATATGCAAAAGTTATATGTACT-------ACTA-TTAATGT 520
| ||||| | |||||||||||||||| ||||| | |||| |||| |||||||
Sbjct 542 CCTTTATGTATGACTATGAATATGCAAATGTTATTTTTACTGCTTTGGACTAATTAATGT 601
Query 521 AAATGTTGCTTTGAATTT 538
|||||||||||| |||||
Sbjct 602 AAATGTTGCTTTCAATTT 619
> Ahg889976 jgi|Araly1|889976|Al_scaffold_0007_1962
Length=414
Score = 333 bits (180), Expect = 1e-90
Identities = 307/366 (84%), Gaps = 18/366 (5%)
Strand=Plus/Plus
Query 58 AATCGCCATGGCTAATAGCTCTTTCAAG-T-TGGAACACCCACTAGAGAG-GAGACA-AA 113
||||||||||||||| || || |||||| | | | |||| || ||| | ||| | |
Sbjct 39 AATCGCCATGGCTAAGAGTTCCTTCAAGATCT-CTA-ACCCTCTCGAG-GCAAGA-ATGA 94
Query 114 TTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAG-AGAGA 172
|||||||||||| ||||| |||||||| || ||||||||||| ||||| || | | ||
Sbjct 95 GTGAATCTTCTCGAATCAGAGAGAAGTACCCTGACAGAATTCCCGTGATTGTGGAAAAG- 153
Query 173 GCT-GAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCT 231
||| || | |||||||||||| | || |||||||||||||| ||||| ||||| |||||
Sbjct 154 GCTGGACA-AAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGCAGATCT 212
Query 232 AACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGC-TGAGTGCCGA-AAAG 289
||| ||||| |||||||| ||||| || || ||||||||||||| || | || || |||
Sbjct 213 AACAGTTGGACAATTTGTATATGTGGTTCGCAAAAGAATCAAGCTTG-GAGCTGAGAAA- 270
Query 290 GCTATCTTCGTCTTTGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATC 349
|||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 271 GCTATCTTTGTCTTTGTTAAGAACACATTGCCTCCAACTGCTGCATTGATGTCTGCAATC 330
Query 350 TATGATGAGA-ACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACAC 408
||||| || | ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 331 TATGAAGA-ACACAAAGATGAAGATGGGTTCCTCTACATGACTTACAGTGGAGAGAACAC 389
Query 409 CTTTGG 414
|||||
Sbjct 390 TTTTGG 395
> Ahg943233 jgi|Araly1|943233|scaffold_603777.1
Length=406
Score = 331 bits (179), Expect = 4e-90
Identities = 302/361 (84%), Gaps = 10/361 (3%)
Strand=Plus/Plus
Query 59 ATCGCCATGGCTAATAGCTCTTTCAAG-TTGGAACACCCACTAGAGAGGAGACA-AATTG 116
|||||||||||||| | ||| |||||| || | | || || |||| |||| | ||
Sbjct 16 ATCGCCATGGCTAAGAACTCCTTCAAGCTTTCTA-ATCCTCTGGAGATGAGA-ATGGCTG 73
Query 117 AATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAGAG-AGAGCT 175
||||| |||| ||||| | ||| || ||||||||| |||| ||||| || ||| || |||
Sbjct 74 AATCTACTCGTATCAGAGCGAAATACCCAGACAGAGTTCCCGTGATTGTGGAGAAG-GCT 132
Query 176 -GAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCTAAC 234
|| || ||||||||||| | || |||||||||||||| ||||| ||||||||||||||
Sbjct 133 GGACAG-AGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGCTGATCTAAC 191
Query 235 TGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGCTAT 294
|||||| || |||||||| ||||| | ||||||||||||||| | |||||||| || ||
Sbjct 192 TGTTGGCCAGTTTGTGTACGTTGTGAGAAAAAGAATCAAGCTGGGAGCCGAAAAAGCCAT 251
Query 295 CTTCGTCTTTGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCTATGA 354
||| |||||||| ||||||||||| || |||||||||||| ||||||||||||| |||||
Sbjct 252 CTTTGTCTTTGTCAAGAACACATTACCCCCAACTGCTGCACTGATGTCTGCAATATATGA 311
Query 355 TGAGA-ACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACACCTTTG 413
|| | ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 312 GGA-ACACAAAGACGAAGATGGGTTTCTCTACATGACATACAGTGGAGAGAACACATTTG 370
Query 414 G 414
|
Sbjct 371 G 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5