BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62040.2 Length=720 Score E Sequences producing significant alignments: (Bits) Value Ahg475132 jgi|Araly1|475132|fgenesh2_kg.2__262__AT1G62040.1 713 0.0 Ahg889976 jgi|Araly1|889976|Al_scaffold_0007_1962 333 1e-90 Ahg943233 jgi|Araly1|943233|scaffold_603777.1 331 4e-90 > Ahg475132 jgi|Araly1|475132|fgenesh2_kg.2__262__AT1G62040.1 Length=649 Score = 713 bits (386), Expect = 0.0 Identities = 463/498 (93%), Gaps = 14/498 (3%) Strand=Plus/Plus Query 52 TTCTTTAATCGCCATGGCTAATAGCTCTTTCAAGTTGGAACACCCACTAGAGAGGAGACA 111 |||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 125 TTCTTTAATCTCCATGGCTAATAGCTCTTTCAAGTTGGAACATCCACTGGAGAGGAGACA 184 Query 112 AATTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAGAGAG 171 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 185 AATTGAATCTTCTCGCATCAGGGACAAGTATCCAGACAGAATTCCAGTGATTGTAGAGAG 244 Query 172 AGCTGAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCT 231 ||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||| Sbjct 245 AGCTGAAAGAAGTGATGTTCCGAATATCGATAAGAAAAAGTACCTTGTTCCGGCTGATCT 304 Query 232 AACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGC 291 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 AACTGTGGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGC 364 Query 292 TATCTTCGTCTTT-GTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCT 350 |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 GATCTTCGT-TTTCGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCT 423 Query 351 ATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACACCT 410 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 424 ATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAAAACACCT 483 Query 411 TTGGTTTGGTTTAAATGTGTGCCTTCCAATGCTTTTGTGCTGATGTGTATATTATATGCT 470 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 484 TTGGTTTGGTTTAA--GTGTGCCTTCCAATGCTTTTGTGCTTATGTGTATATTATGTGCT 541 Query 471 CTTTTATA-AC-ACTATGAATATGCAAAAGTTATATGTACT-------ACTA-TTAATGT 520 | ||||| | |||||||||||||||| ||||| | |||| |||| ||||||| Sbjct 542 CCTTTATGTATGACTATGAATATGCAAATGTTATTTTTACTGCTTTGGACTAATTAATGT 601 Query 521 AAATGTTGCTTTGAATTT 538 |||||||||||| ||||| Sbjct 602 AAATGTTGCTTTCAATTT 619 > Ahg889976 jgi|Araly1|889976|Al_scaffold_0007_1962 Length=414 Score = 333 bits (180), Expect = 1e-90 Identities = 307/366 (84%), Gaps = 18/366 (5%) Strand=Plus/Plus Query 58 AATCGCCATGGCTAATAGCTCTTTCAAG-T-TGGAACACCCACTAGAGAG-GAGACA-AA 113 ||||||||||||||| || || |||||| | | | |||| || ||| | ||| | | Sbjct 39 AATCGCCATGGCTAAGAGTTCCTTCAAGATCT-CTA-ACCCTCTCGAG-GCAAGA-ATGA 94 Query 114 TTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAG-AGAGA 172 |||||||||||| ||||| |||||||| || ||||||||||| ||||| || | | || Sbjct 95 GTGAATCTTCTCGAATCAGAGAGAAGTACCCTGACAGAATTCCCGTGATTGTGGAAAAG- 153 Query 173 GCT-GAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCT 231 ||| || | |||||||||||| | || |||||||||||||| ||||| ||||| ||||| Sbjct 154 GCTGGACA-AAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGCAGATCT 212 Query 232 AACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGC-TGAGTGCCGA-AAAG 289 ||| ||||| |||||||| ||||| || || ||||||||||||| || | || || ||| Sbjct 213 AACAGTTGGACAATTTGTATATGTGGTTCGCAAAAGAATCAAGCTTG-GAGCTGAGAAA- 270 Query 290 GCTATCTTCGTCTTTGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATC 349 |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 271 GCTATCTTTGTCTTTGTTAAGAACACATTGCCTCCAACTGCTGCATTGATGTCTGCAATC 330 Query 350 TATGATGAGA-ACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACAC 408 ||||| || | ||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 331 TATGAAGA-ACACAAAGATGAAGATGGGTTCCTCTACATGACTTACAGTGGAGAGAACAC 389 Query 409 CTTTGG 414 ||||| Sbjct 390 TTTTGG 395 > Ahg943233 jgi|Araly1|943233|scaffold_603777.1 Length=406 Score = 331 bits (179), Expect = 4e-90 Identities = 302/361 (84%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 59 ATCGCCATGGCTAATAGCTCTTTCAAG-TTGGAACACCCACTAGAGAGGAGACA-AATTG 116 |||||||||||||| | ||| |||||| || | | || || |||| |||| | || Sbjct 16 ATCGCCATGGCTAAGAACTCCTTCAAGCTTTCTA-ATCCTCTGGAGATGAGA-ATGGCTG 73 Query 117 AATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAGAG-AGAGCT 175 ||||| |||| ||||| | ||| || ||||||||| |||| ||||| || ||| || ||| Sbjct 74 AATCTACTCGTATCAGAGCGAAATACCCAGACAGAGTTCCCGTGATTGTGGAGAAG-GCT 132 Query 176 -GAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCTAAC 234 || || ||||||||||| | || |||||||||||||| ||||| |||||||||||||| Sbjct 133 GGACAG-AGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGCTGATCTAAC 191 Query 235 TGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGCTAT 294 |||||| || |||||||| ||||| | ||||||||||||||| | |||||||| || || Sbjct 192 TGTTGGCCAGTTTGTGTACGTTGTGAGAAAAAGAATCAAGCTGGGAGCCGAAAAAGCCAT 251 Query 295 CTTCGTCTTTGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCTATGA 354 ||| |||||||| ||||||||||| || |||||||||||| ||||||||||||| ||||| Sbjct 252 CTTTGTCTTTGTCAAGAACACATTACCCCCAACTGCTGCACTGATGTCTGCAATATATGA 311 Query 355 TGAGA-ACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACACCTTTG 413 || | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 312 GGA-ACACAAAGACGAAGATGGGTTTCTCTACATGACATACAGTGGAGAGAACACATTTG 370 Query 414 G 414 | Sbjct 371 G 371 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26495427315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5