BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G62045.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924790 jgi|Araly1|924790|scaffold_200351.1                        335    2e-91


> Ahg924790 jgi|Araly1|924790|scaffold_200351.1
Length=246

 Score =  335 bits (181),  Expect = 2e-91
 Identities = 219/237 (92%), Gaps = 4/237 (2%)
 Strand=Plus/Plus

Query  53   GTTTGCGAAAAGATATCGC-AATATGGCAAGTGAAGCACCGAGTTGGGCAGATCAATGGG  111
            ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct  1    GTTTGCGAAAAGATATCGCGAA-ATGGCAAGTGAAGCACCGAGTTGGGCAGATCAATGGG  59

Query  112  GAACCGGAGGGATCGGGGAGATGCCGGAGGAAGACAACACCAAAAGCAAGAAAGATGCCG  171
            |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| 
Sbjct  60   GAACCGGAGGGATCGGCGAGATGCCGGAGGAAGAGAACACCAAAACCAAGAAAGATGCCA  119

Query  172  GCGGTAAGAACTCTGGCCA-AACCAAATCAGCCAAGATTGTTGATTTCGTAAGTTTTAAG  230
            |||||||||| |||||||| ||| ||||| |||||||||||||||||| ||||| | |||
Sbjct  120  GCGGTAAGAATTCTGGCCAGAAC-AAATCGGCCAAGATTGTTGATTTCATAAGTCTCAAG  178

Query  231  TGGATGAAGAATCTTGTCCATAAGAAGAAGAAAGACTCTGATTCTTGAAAGATAAGA  287
            ||||||||||||||||| || |||||||| |||||||||||||||||||| | ||||
Sbjct  179  TGGATGAAGAATCTTGTGCAGAAGAAGAAAAAAGACTCTGATTCTTGAAAAAGAAGA  235



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5