BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62050.1
Length=2221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475131 jgi|Araly1|475131|fgenesh2_kg.2__261__AT1G62050.1 2122 0.0
Ahg312202 jgi|Araly1|312202|fgenesh1_pm.C_scaffold_1000982 470 2e-131
> Ahg475131 jgi|Araly1|475131|fgenesh2_kg.2__261__AT1G62050.1
Length=2128
Score = 2122 bits (1149), Expect = 0.0
Identities = 1278/1340 (95%), Gaps = 9/1340 (1%)
Strand=Plus/Plus
Query 61 gaagaagaagaagaagaagaagaagaataagaaTCACAATCACTCTTTTTGAGGAAGTTA 120
|||||||| |||| || |||||||||| ||||||||||||||||||| |||||| | |
Sbjct 42 GAAGAAGACGAAGTAGTAGAAGAAGAAGAAGAATCACAATCACTCTTATTGAGG-A---A 97
Query 121 GTTAGATTCTCAATCTCTCCGGAAACAATCATGGCTCGGCCTTCGTCGGCGTCTGCAACA 180
||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 98 GTTAGATTCTCAATCTCGCCGGAAA-AATTATGGCTCGGCCTTCGTCGGCGTCTGCAACA 156
Query 181 ACGGCAATTAGACCGGAAGATTACTCTCACAGTCCAGTTCATTACGCCGTCGTTTTGGGA 240
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 157 ACGGCAATCAGACCGGAAGATTATTCTCACAGTCCAGTTCATTACGCCGTCGTTTTGGGA 216
Query 241 GATCACGGTGCACTGACTCGTCTTCTCTCTTCCTTGCCGAAGCTAGGAGATCCTGAACAG 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 217 GATCACGGTGCACTGACTCGTCTTCTCTCTTCCTTGCCGAAGTTAGGAGATCCTGAACAG 276
Query 301 ATCCGAACAGAATCCGACTCACTGAGTCAAGAGCGAGTCGCGGATCAGATCTCCGCCGTG 360
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 277 ATCCGAACAGAATCTGACTCACTGAGTCAAGAACGAGTTGCGGATCAGATCTCCGCCGTG 336
Query 361 CTTGACCGTCGCGACGTTCCTTCACGCGAAACGCCTCTTCATCTGGCGGTTAGACTCGAC 420
||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||
Sbjct 337 CTTGACCGTCGCGACGTTCCTTCGCGCGAAACGCCTCTCCATTTGGCGGTTAGACTTGAT 396
Query 421 GATTTGTTCGCGGCGAGGGCGATTTCGTCGGCCGGTGGTGATATTTCG-TTACAGAATGC 479
||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||| ||
Sbjct 397 GATTTGTTCGCGGCGAGGGCGATTTCGTCAGCCGGAGGTGATATTTCGCTT-CAGAACGC 455
Query 480 TTCTGGATGGAATCCGTTACAAGAGGCGTTTTGTCGCCGGAATTCTGAGGTTATGAAAGT 539
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 456 TTCTGGATGGAATCCGTTACAGGAAGCGTTTTGTCGCCGGAATTCTGAGGTTATGAAAGT 515
Query 540 GCTTTTACGGCATCACCACCGTTTAGCTTGGTGTAAATGGCGGCGGAGATTACCTCGTTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 GCTTTTACGGCATCACCACCGTTTAGCTTGGTGTAAATGGCGGCGGAGATTACCTCGTTT 575
Query 600 GATAGCTGTTCTCCGTCGTATGAGAGATTTTTACATGGAGATCTCTTTTCATTTCGAGAG 659
|| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 576 AATCGCTGTTCTTCGTCGTATGAGAGATTTTTACATGGAGATCTCTTTCCACTTCGAGAG 635
Query 660 CTCTGTGATTCCGTTCGTCGGAAAAATCGCTCCCTCTGATACTTACAAGATCTGGAAACG 719
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 636 CTCTGTGATTCCGTTCGTCGGAAAAATCGCTCCCTCTGACACTTACAAGATCTGGAAACG 695
Query 720 CGACGGTAACCTCCGTGCTGATACTACATTAGCCGGATTTGATGGTTTAAAAATTCAAAG 779
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 696 CGACGGTAACCTCCGTGCTGATACTACTTTAGCTGGATTTGATGGTTTAAAAATTCAAAG 755
Query 780 AGCGGATCAAAGCTTTTTATTCCTCGGTGATGGTGATGAATCTCTAGATATTTCTCCTGG 839
||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 756 AGCAGATCAAAGCTTTTTGTTCCTTGGTGATGGTGATGAATCTCTAGATATTGCTCCTGG 815
Query 840 ATCTTTGCTTGTACTGAATCGAGACGATCGGAAAATTCTCGACGCTTTTGAAAGTGCCGG 899
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 816 ATCTTTGCTTGTACTGAATCGAGATGATCGGAAAATTCTCGACGCTTTTGAAAGTGCCGG 875
Query 900 AGCTCCGATTAGTGACTCCGACATCGCCGGATTCTGTTCTCAGTCAAGCTTATATCGTCC 959
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 876 AGCTCCGATTAGTGACTCCGATATCGCCGGATTCTGTTCTCAGTCTAGCTTGTATCGTCC 935
Query 960 GGGAATGGATGTTACTAAAGCAGAGCTCGTCGGACGAACGAATTGGCGGCGGCAAGAGAA 1019
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 936 GGGAATGGATGTTACTAAAGCAGAGCTCGTCGGAAGAACAAATTGGCGACGGCAAGAGAA 995
Query 1020 GATGGAGAACGTCGGAGAATGGAAAGCTAGGGTTTACGAAATCCAGAAAGTGACATTTAG 1079
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 996 GATGGAGAACGTCGGAGAATGGAAAGCTAGGGTTTATGAAATCCAGAAAGTGACATTTAG 1055
Query 1080 TTTCAGATCTCGGAAAATTGTTACCGGAGATGGAAGCGAACAAGTTTTACCGTTGGAGTT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TTTCAGATCTCGGAAAATTGTTACCGGAGATGGAAGCGAACAAGTTTTACCGTTGGAGTT 1115
Query 1140 AGACGAAGACGATGAAGGATTCTTAGTAGCTGAGAATCCGAGTTTCTTAGCTCCTCCGCC 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1116 AGACGAAGACGATGAAGGATTCTTAGTAGCTGAGAATCCGAGTTTTTTAGCTCCTCCGCC 1175
Query 1200 ACGGTCACAGAGACGACACAGTAGCTTTGTTAAAGAAGATAGAGATTGGATCTCCGTTGG 1259
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1176 ACGGTCACAGAGACGACACAGTAGCTTCGTTAAAGAAGATAGAGATTGGATCTCCGTTGG 1235
Query 1260 GAGAAAAAGCGTCGACGTTTATCCCTCCGCCGCACCACCGCCGCCGCGGCAATCTCAATC 1319
|||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 1236 GAGAAAAAGCGTCGACGTTTATCCATCCGCCGCACCACCACCGCCGCAGCAATCTCAATC 1295
Query 1320 ACCGCGAAGATCAGTGTCTCAATTTCAACCACCGAGAAGGTCAATGGCTCAGGT-CCAGC 1378
||||||||||||||||||||||||||||||||||||||| ||| | ||||| | |||||
Sbjct 1296 ACCGCGAAGATCAGTGTCTCAATTTCAACCACCGAGAAGATCAGTAGCTCAA-TACCAGC 1354
Query 1379 CACCGAGAAGATCAGTAGCT 1398
|||||||||||||||| |||
Sbjct 1355 CACCGAGAAGATCAGTGGCT 1374
Score = 1140 bits (617), Expect = 0.0
Identities = 755/819 (92%), Gaps = 19/819 (2%)
Strand=Plus/Plus
Query 1339 CAATTTCAACCACCGAGAAGGTCAATGGCTCAGGTCCAGCCACCGAGAAGATCAGTAGCT 1398
|||| |||| ||||| |||| ||| || |||| | || |||||||||||||||||||||
Sbjct 1285 CAATCTCAATCACCGCGAAGATCAGTGTCTCAATTTCAACCACCGAGAAGATCAGTAGCT 1344
Query 1399 CAAGCCCAGCCACCGAGAAGATCAGTGGCTCTACCTTCAACGGTGTCTCCGGTGAATCCT 1458
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1345 CAATACCAGCCACCGAGAAGATCAGTGGCTGTACCTTCAACGGTGTCTCCGGTGAATCCT 1404
Query 1459 CCACCGTCTCCTCAGATCAAAGAGAAGGAATTTGTGAAAAGCTTGCATCCGTCAGTGTGG 1518
|| ||||||||||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct 1405 CCGCCGTCTCCTCATATTAAAGAGAAGGAATTCGTTAAGAGCTTGCATCCGTCAGTGTGG 1464
Query 1519 TTAACGGAACAATTTCCGTTAAAAACGGAGGAGCTGCTTCCGTTACTTGACATTTTAGCT 1578
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 TTAACGGAACAGTTTCCGTTAAAAACGGAGGAGCTGCTTCCGTTACTTGACATTTTAGCT 1524
Query 1579 AATAAAGTCAAAGCCGTCGCCAGAATGCGTGATCTTCTCACCACTAAGTTCCCGCCGGGA 1638
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1525 AATAAAGTCAAAGCCGTCGCCAGAATGCGTGATCTTCTCACCACCAAGTTCCCGCCGGGA 1584
Query 1639 ACTTTTCCAGTCAAGCTGTCTATTCCGGTGGTCCCTACGGTCAAAGTAGTCATCACATTC 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 ACTTTTCCAGTCAAGCTGTCTATTCCGGTGGTCCCTACGGTCAAAGTAGTCATCACATTC 1644
Query 1699 ACCAAGTTTGTCGAGCTTCCGCCGGCGGAGACATTCTACACGCCGCTCTCAAGCCCAAGA 1758
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1645 ACCAAGTTCGTCGAGCTTCCCCCGGCGGAGACATTCTACACGCCGCTCTCAAGCCCAAGA 1704
Query 1759 TTCCTCTACTCCGCCACCGCGGGTGAAGAAGACCATTCCGATGGCGAGAAACCCGATGCT 1818
||||||||||||||| | || | |||||||||| ||||||||||| ||| | ||||||
Sbjct 1705 TTCCTCTACTCCGCCGCTGCCG---AAGAAGACCAATCCGATGGCGAAAAAACTGATGCT 1761
Query 1819 CGAAATTCGATTTCACGGCCATCGACGTGGCTGAGACTAGCCACCGGAAAAGGCTCACAT 1878
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1762 CGAAATTCGATTTCACGGCCATCTACGTGGCTGCGACTAGCCACCGGAAAAGGCTCACAT 1821
Query 1879 CGACGGGTAGAAGAGGAGGAGCAACAAACGCCGGACCCATTCGCTATACCAATTGGGTAT 1938
|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1822 CGACGGATAGAGGAGGAGGAGCAACAAACGCCGGACCCATTTGCTATACCAATTGGGTAT 1881
Query 1939 AAATGGACAAGCATGAGTAGTAGTAATAGTAAGTCAGGTAATAGTAGTAAAATGAAGAAA 1998
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1882 AAATGGACAAGCATGAGTAGTAATAATAATAAGTCAGGTAATAATAGTAAAATGAAGAAA 1941
Query 1999 TCAAAGTCTACTAAGAGAACTAAGTAGTATCTTCTTTGAGGTATTAAAGATACGAATCAA 2058
|| ||||||||||||||| |||||||||||| ||||||||| |||||||||| |
Sbjct 1942 TCGAAGTCTACTAAGAGATCTAAGTAGTATCCTCTTTGAGGAATTAAAGATA----T--- 1994
Query 2059 GTCCTCTTTTAGTGTAGATAATCTGATATTAGTAAAATACAGAGAAGCTGGTTGTAGTAT 2118
| | | ||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1995 -T--T-T---AGTGTAGATAATCTGATATTAGTAATATACAGAGAAACTGGTTGTAGTAT 2047
Query 2119 TTCTTTACTATACATTTATATTTTTT-CATATGATTAAA 2156
|| |||||||||||||| |||||||| ||||||||||||
Sbjct 2048 TTTTTTACTATACATTT-TATTTTTTTCATATGATTAAA 2085
Score = 95.3 bits (51), Expect = 2e-18
Identities = 56/58 (97%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 1 GTAACATCCCATTTCCAAAAACATTCCGTTTCAGCTTCAATCgaagaagacgaactag 58
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1 GTAACATCCCATTTCCAAAAACATTCCGTTTCAGCTTCAA-CGAAGAAGACGAAGTAG 57
Score = 80.5 bits (43), Expect = 5e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 2175 TTTTCGTCGGTCATGGTCTAAAAGAGTTCAATAATAAAAGCTT 2217
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2086 TTTTCGTCGGTCATGGTCTAAAAGAGTTCAATAATAAAAGCTT 2128
> Ahg312202 jgi|Araly1|312202|fgenesh1_pm.C_scaffold_1000982
Length=1887
Score = 470 bits (254), Expect = 2e-131
Identities = 697/909 (77%), Gaps = 38/909 (4%)
Strand=Plus/Plus
Query 199 GATTACT-CTCACAGTCCAGTTCATTACGCCGTCGTTTTGGGAGATCACGGTGCACTGAC 257
||||| | |||||||||| || || |||||||||||| | |||||||||| | || |
Sbjct 46 GATTA-TGCTCACAGTCCCGTCCACTACGCCGTCGTTGTAGGAGATCACGCCGGTTTGTC 104
Query 258 TCGTCTTCTCTCTTCCTTGCCGAAGCTAGGAGATCCTGAACAGATCCGA-ACAGAATCCG 316
||||||| | || || ||||| || ||| || || ||||| |||| | || || ||||
Sbjct 105 TCGTCTTGTTTCGTCTTTGCCTAAACTAACCGACCCGGAACAAATCC-ACACTGAGTCCG 163
Query 317 ACTCACTGAGTCAAGAGCGAGTCGCGGATCAGATCTCCGCCGTGCTTGACCGTCGCGACG 376
| ||| |||| ||||||||||||||||| || |||||| |||| || ||||| || ||||
Sbjct 164 ATTCAATGAGCCAAGAGCGAGTCGCGGAGCAAATCTCCACCGTCCTCGACCGCCGTGACG 223
Query 377 TT-CCTTCACGCGAAACGCCTCTTCATCTGGCGGTTA--GACTCGACGA-TTTGTTCGCG 432
|| |||| | || |||||||| ||| | |||| || || | | ||| ||| || ||
Sbjct 224 TTCCCTT-TGGAGAGACGCCTCTCCATTTAGCGG-TACGGA-TAGGCGACTTT-TTGGCA 279
Query 433 GCGAGGGCGATTTCGTCGGCCGGTGGTGATATTTCGTTACAGAATGCTTCTGGATGGAAT 492
|||| | ||||||| || ||||| | |||||| || | || || || | || ||||||
Sbjct 280 GCGAAGACGATTTCTTCCGCCGGAGCTGATATCACGCTCCAAAACGCCGCCGGTTGGAAT 339
Query 493 CCGTTACAAGAGGCGTTT-TGTCGCCGGAATTCTGAGGTTA-TGAAAGTGCTTTTACGGC 550
|| || || ||||| ||| ||||| || || || ||| | | || | | || | |||
Sbjct 340 CCTTTGCACGAGGC-TTTGTGTCGTCGAAACTCAGAGATCACGGAGA-CGATTCTCCGGA 397
Query 551 ATCACCACCGTTTAGCTTGGTGTAAATGGCGGCGGAGA-TTACCTCGTTTGATAGCTGTT 609
| |||||||||| || ||| |||||| | |||||| || |||| | | || || ||
Sbjct 398 ACCACCACCGTTCGGCGTGGAACAAATGGAGACGGAGACTT-CCTCATCTCATCGCCGTG 456
Query 610 CTCCGTCGTATGAGAGATTTTTACATGGAGATCTCTTTTCATTTCGAGAGCTCTGTGATT 669
||| | || ||||||||||| ||||||||||| || ||||| ||||||||||| ||||||
Sbjct 457 CTCAGCCGCATGAGAGATTTCTACATGGAGATATCGTTTCACTTCGAGAGCTCCGTGATT 516
Query 670 CCGTTCGTCGGAAAAATCGCTCCCTCTGATACTTACAAGATCTGGAAACGCGACGGTA-A 728
|| |||||||||||||||||||| || ||||||||||||||||||||||||| ||| | |
Sbjct 517 CCATTCGTCGGAAAAATCGCTCCTTCCGATACTTACAAGATCTGGAAACGCGGCGG-AGA 575
Query 729 CCTCCGTGCTGATACTACATTAGCCGGATTTGATGGTTTAAAAATTCAAAGAGCGGATCA 788
| || || |||||| ||||||||||||| || ||||| || || | | ||| ||||
Sbjct 576 TTTACGCGCCGATACTTCATTAGCCGGATTCGACGGTTTCAAGATCCGCCGCGCGAATCA 635
Query 789 AAGCTTTTTATTCCTCGGTGATGGTGATGAATCTCTAGATATTTCTCCTGG-ATCTTTGC 847
|||||| | || || ||||||| ||||| | ||| ||| | |||||||| | | ||||
Sbjct 636 GAGCTTTCTCTTTCTTAGTGATGGAGATGAGTTTCTTGATGTGTCTCCTGGTA-CATTGC 694
Query 848 TTGTACTGAATC-GAGACGATCGGAAA--ATTCTCGA-CGCTTTTGAAAGTGCCGGAGCT 903
|||| | || | |||||||| ||| || || || |||||| |||| || || |
Sbjct 695 TTGTGTTAAA-CAGAGACGATA--AAACGAT-CTTGAACGCTTTCGAAAACGCTAAAGAT 750
Query 904 CCGATTAGTGACTC-CGACATCGCCGGATTCTGTTCTCAGTCAAGCTTATATCGTCCGGG 962
|||||||| || | ||| |||||||| || ||| ||| || ||||| || ||||| ||
Sbjct 751 CCGATTAGCGA-TAACGATATCGCCGGCTTTTGTGGTCAATCTAGCTTGTACCGTCCTGG 809
Query 963 AATGGATGTTACTAAAGCAGAGCTCGTCG-GACGAACGAATTGGCGGCGGCAAGAGAAGA 1021
||||||||||||||||||||||||||| | || |||||||||||| ||||||| ||||
Sbjct 810 AATGGATGTTACTAAAGCAGAGCTCGTTGAGAT-AACGAATTGGCGACGGCAAGGGAAGG 868
Query 1022 TGGAGAAC-GTCGGAGAATGGAAAGCTAGGGTTTACGAAATCCAGAAA-GTGACATTTAG 1079
| || ||| |||||||||||||| |||| | |||||| ||| | ||| || | |||||
Sbjct 869 TTGA-AACTGTCGGAGAATGGAAGGCTAAAGCTTACGATATCGA-AAACGTAAGTTTTAG 926
Query 1080 TTTCAGATC 1088
||||| |||
Sbjct 927 TTTCAAATC 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83608087775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5