BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62060.1
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931385 jgi|Araly1|931385|scaffold_303842.1 486 8e-137
Ahg924807 jgi|Araly1|924807|scaffold_200368.1 446 1e-124
Ahg315187 jgi|Araly1|315187|fgenesh1_pm.C_scaffold_2000220 427 5e-119
Ahg924779 jgi|Araly1|924779|scaffold_200340.1 351 3e-96
> Ahg931385 jgi|Araly1|931385|scaffold_303842.1
Length=486
Score = 486 bits (263), Expect = 8e-137
Identities = 423/496 (85%), Gaps = 27/496 (5%)
Strand=Plus/Plus
Query 34 AAGATAAA-AACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGC 92
|||| ||| || || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAGA-AAAGAAAAAACAAAAGATGAATGCCACAAAGTGTGTTGTGCTTCTCGTGATTGGC 59
Query 93 ATTTTG-TGTGCCATTGTCACCGCAAGGCAGGTCGAAGAAGTGTCCAAAGAGACCAAATT 151
|||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 60 -GTTTGTTGTGCCATTGTCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATT 118
Query 152 AGGCACCTCTCTTCCAAAATCTACTAACAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGG 211
||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||| |||
Sbjct 119 AGGCACCTCTCTTCCAAAAACTACTACCAAAGGCGTTGGAGCTCAGCTTTTTGCTTATGG 178
Query 212 T-CTTACTTACAGCGGCAGC-AGTGTCTCTAGCTCTGCTAGTGCTTTTAACAATCCCAAA 269
|| ||||||||| ||| | ||||| ||||| ||||| ||||||||| |||||||||
Sbjct 179 CGCT-ACTTACAGCACCAGTGA-TGTCTATAGCTTTGCTAATGCTTTTAAAAATCCCAAA 236
Query 270 GGTCCAGGG-GCCAGTGCATCCGAAAGTGGCTACACAAGTACCATCGGACAAGTC-ATTG 327
||||||||| || | ||||| ||||| |||||||||| |||||| |||| |||| || |
Sbjct 237 GGTCCAGGGAGCAA-TGCATACGAAAATGGCTACACAGGTACCAACGGAGTAGTCTAT-G 294
Query 328 CCAAGGGTCGCAAGGCAAGAGTTTCTTCTGCAAGT-GCTTCTGCCGCTA-CAGGTGAGGC 385
||||||||| ||||||||||||||||||||||||| | |||| |||| | || | ||
Sbjct 295 CCAAGGGTCACAAGGCAAGAGTTTCTTCTGCAAGTCG-TTCTAAAGCTAAC-GGCAATGC 352
Query 386 TGCAGCTGCAGTGACTCGCAAAGCTGCTGCTGCACGTGCAAAGGGTAAGGTAGCTTCCG- 444
|| ||||||| |||||| |||||||||||||||||||||||| ||| |||| ||||
Sbjct 353 TGAAGCTGCAATGACTCACAAAGCTGCTGCTGCACGTGCAAAAGGTTTGGTAAAATCCGA 412
Query 445 CATCAAGGGTGAAGGG---TTCCTCTGAGAAGAAGAAGAAGGACCACAAAGGAAAAAAG- 500
| |||||||||||||| |||||||| |||||||||| || | |||||||| |||||
Sbjct 413 C-TCAAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAG--GG-CTACAAAGGATAAAAGA 468
Query 501 -GA-TTGAGCGTGAGG 514
|| ||||||||||||
Sbjct 469 AGAATTGAGCGTGAGG 484
> Ahg924807 jgi|Araly1|924807|scaffold_200368.1
Length=706
Score = 446 bits (241), Expect = 1e-124
Identities = 388/455 (85%), Gaps = 26/455 (6%)
Strand=Plus/Plus
Query 39 AAAAACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCATTTTG 98
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 10 AAAAA-AATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTG 68
Query 99 TGTGCCATTGTCACCGCAAGGCAGGTCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACC 158
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 69 TGTGCCATTGTCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACC 128
Query 159 TCTCTTCCAAAATCTACTAACAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTCTTA-C 217
|||||||||||| |||||| |||||||||||||||||||||||||||| ||| | | |
Sbjct 129 TCTCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGG-CACAAC 187
Query 218 TTACAGCGGCAGC--AGTGTCTCTAGCTCTGCTAGTGCTTTTAACAATCCCAAAGGTCCA 275
||||||| | | | |||||||||| |||||| |||| ||| |||||||||||||
Sbjct 188 TTACAGCAACT-CTTAC-GTCTCTAGCTATGCTAGAGCTTCTAATGGTCCCAAAGGTCCA 245
Query 276 GGGGCC-AGTGCATCCGAA-AGTGGCTACA-CA-AGTACCA-TCGGACAAGTC-ATTGCC 329
| ||| | |||| ||||| | ||||| || || | ||||| | ||||||||| || |||
Sbjct 246 GACGCCGA-TGCAGCCGAATA-TGGCT-CAACATA-TACCAAT-GGACAAGTCTAT-GCC 299
Query 330 AAGGGTCGCAAGGCAAG-AGTTTCTTCTGCAAGTGCTTCTGCCGCTACAGGTGAGGCTGC 388
|||||||||||||||| | |||||||| ||||| |||| |||||||| || ||||
Sbjct 300 AAGGGTCGCAAGGCAAACA-TTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGA 358
Query 389 AGCTGCAGTGACTCGCAAAGCTGCTGCTGCACGTGCAAAGGGTAAGGTAGCTTCCG-CAT 447
|||||||| || ||| ||||||||||||||||||||||| ||| |||| |||| | |
Sbjct 359 AGCTGCAGCGAATCGAAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCGAC-T 417
Query 448 CAAGGGTGAAGGG---TTCCTCTGAGAAGAAGAAG 479
||||||||||||| |||||||| ||||||||||
Sbjct 418 CAAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAG 452
> Ahg315187 jgi|Araly1|315187|fgenesh1_pm.C_scaffold_2000220
Length=444
Score = 427 bits (231), Expect = 5e-119
Identities = 385/455 (85%), Gaps = 28/455 (6%)
Strand=Plus/Plus
Query 54 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCATTTTGTGTGCCATTGTCACC 113
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTGTGTGCCATTGTCACC 60
Query 114 GCAAGGCAGGTCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAAAATCT 173
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAACT 120
Query 174 ACTAACAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTCTTA-CTTACAGCGGCAGC-- 230
|||| |||||||||||||||||||||||||||| ||| | | |||||||| | |
Sbjct 121 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGG-CACAACTTACAGCAACT-CTT 178
Query 231 AGTGTCTCTAGCTCTGCTAGTGCTTTTAACAATCCCAAAGGTCCAGGGGCC-AGTGCATC 289
| |||||||||| |||||| |||| ||| |||||||||||||| ||| | |||| |
Sbjct 179 AC-GTCTCTAGCTATGCTAGAGCTTCTAATGGTCCCAAAGGTCCAGACGCCGA-TGCAGC 236
Query 290 CGAA-AGTGGCTACA-CA-AGTACCA-TCGGACAAGTC-ATTGCCAAGGGTCGCAAGGCA 344
|||| | ||||| || || | ||||| | ||||||||| || ||||||||||||||||||
Sbjct 237 CGAATA-TGGCT-CAACATA-TACCAAT-GGACAAGTCTAT-GCCAAGGGTCGCAAGGCA 291
Query 345 AG-AGTTTCTTCTGCAAGTGCTTCTGCCGCTACAGGTGAGGCTGCAGCTGCAGTGACTCG 403
| | |||||||| ||||| |||| |||||||| || |||| |||||||| || |||
Sbjct 292 AACA-TTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCTGCAGCGAATCG 350
Query 404 CAAAGCTGCTGCTGCACGTGCAAAGGGTAAGGTAGCTTCCG-CATCAAGGGTGAAGGG-- 460
||||||||||||||||||||||| ||| |||| |||| | ||||||||||||||
Sbjct 351 AAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCGAC-TCAAGGGTGAAGGGCA 409
Query 461 -TTCCTCTGAGAAGAAGAAGAAGGACCACAAAGGA 494
|||||||| |||||||||| || | ||||||||
Sbjct 410 GTTCCTCTGGGAAGAAGAAG--GG-CTACAAAGGA 441
> Ahg924779 jgi|Araly1|924779|scaffold_200340.1
Length=487
Score = 351 bits (190), Expect = 3e-96
Identities = 398/492 (81%), Gaps = 40/492 (8%)
Strand=Plus/Plus
Query 49 AAAAGATGAATG-CCACAAAGTTTGTTGTGCTTCTCGTGATTGGCATTTTGTGTGCCATT 107
|||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 16 AAAAGATGAATGTCC-CAAAGTTTGTTGTGCTTCTCGTGATTGGTGTTTTGTTTGCCATT 74
Query 108 GTCACCGCAAGGCAGGTCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCA 167
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 75 GTCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGTACCTCTCTTTCA 134
Query 168 AAATCTACTAACAAAGGCATTGGAGCTCAGCTTTCTG-CTGCTGGTCTTACTTACAG-CG 225
|||||||||| ||||||| |||||||||||||||| | || || | || |||| |
Sbjct 135 AAATCTACTATCAAAGGCGTTGGAGCTCAGCTTTC-GACTAATGC-C--ACA-ACAGACA 189
Query 226 GCAGCAGTGTC----TCTAGCTCTGCTAGTGCTTTTAACAATCCCAAAGGTCCA-GGGGC 280
||| || | || ||||||| ||| ||||| ||| ||||||||||||| |||||
Sbjct 190 GCATCACT-TCGGGGTCTAGCTTTGCCAGTGCAACTAAGGGTCCCAAAGGTCCAAGGGGC 248
Query 281 CAGTGCATCCGAAAGTGGCTACACAAGTACCATCGGACAAGTC-ATTGCCAAGGGTCGCA 339
| |||||||||| ||| |||||||||||||| ||| || ||| || |||||||||| ||
Sbjct 249 GA-TGCATCCGAAGGTGCCTACACAAGTACCACCGGCCATGTCGAT-GCCAAGGGTCACA 306
Query 340 AGGCAAGAGTTTCTTCTGCAAGTGCTTC-TGCCGCTACAGGTGAGG-CTGCAGCTGCAGT 397
|| |||||||||||||| |||||| ||| | || ||||||| | || || ||||||||
Sbjct 307 AGACAAGAGTTTCTTCTACAAGTGGTTCAT-CCTCTACAGGAG-GGTCTAAAGCTGCAGC 364
Query 398 GA-CTCGCAAAGCTGCTGCTGCACGTGCAAAG-GGTAAGGTAGCTTCCG-CATCAAGGGT 454
|| | | |||||||||| || || ||||| | ||| ||| ||||| | || | ||
Sbjct 365 GAAC-CACAAAGCTGCTTCTTCAAGTGCAG-GTGGTTCCATAGGTTCCGGC-TCCTGTGT 421
Query 455 GAAGGGTTCCTCTGAGAAGAAGAAGAAGGACCACAAAGGAAAAAAG--GA-TTGAGCGTG 511
|||||| ||||||||||||||| | | | | || ||||||||| || ||||| |||
Sbjct 422 GAAGGGCTCCTCTGAGAAGAAG--G--G--C-A-AA-GGAAAAAAGAAGAATTGAGAGTG 472
Query 512 AGGTCATCTCAT 523
|||| |||||||
Sbjct 473 AGGTGATCTCAT 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26952902319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5