BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62130.1
Length=3157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315176 jgi|Araly1|315176|fgenesh1_pm.C_scaffold_2000209 2483 0.0
Ahg329179 jgi|Araly1|329179|fgenesh1_pm.C_scaffold_7001406 1216 0.0
> Ahg315176 jgi|Araly1|315176|fgenesh1_pm.C_scaffold_2000209
Length=3144
Score = 2483 bits (1344), Expect = 0.0
Identities = 1679/1836 (91%), Gaps = 41/1836 (2%)
Strand=Plus/Plus
Query 1310 GTTCATTTGGAACTCCAATTTCTGGTTTACTGATACTTCATTGGGGAAAAACACTTGCAG 1369
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1313 GTTCATTTGGAACTCCAATTTCTGGTTTACTGATACTTCATTGGGAAAAAACACTTGCAG 1372
Query 1370 GGGACAGGGTAAGATTCTTCGGTGATGAGTTGTGTCCGGGGCTACCTACCTCAAGGGGAC 1429
| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1373 GTGACAGGGTAAGATTCATAGGTGATGAGTTGTGTTCGGGGCTACCTACCTCAAGGGGAC 1432
Query 1430 CACCTTATGGGTTTATAGGGAAAGTACTGTTAGTATTTGATGAGAATCCTTCAGCTAAAG 1489
||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1433 CACCTTATGGGGTTAGAGGGAAAGTACTTTTAGTATTTGATGAGAATCCTTCAGCTAAAG 1492
Query 1490 TGGGTGTTAGATTTGAGAATCCAGTACCTGATGGAGTTGATCTTGGTCAACTGTGTGAAA 1549
|||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 1493 TGGGTGTTAGATTTGAGAATCCAGTAGTTGATGGCGTTGATCTTGGTGAACTGTGTGAAA 1552
Query 1550 TGGGACATGGGTTCTTCTGCAGTGCTACTGATCTTCAGTTCGAAAGCTCGGCATCTGACG 1609
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1553 TGGGACATGGGTTCTTCTGCAGTGCTACTGATCTTCAGTTTGAAAGCTCGGGTTCTGAGG 1612
Query 1610 ATCTAAATGAATTACTTGTTA-CCAAATTGTTTGAGGTTGCCCATGATCAGAGCAGAACT 1668
||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||
Sbjct 1613 ATCTAAATGAATTACTTGTTAGCCAA-TTGTTTGAGGTTGCCCATGATGAGAGCAGAACT 1671
Query 1669 TGTCCGGTTATTATATTTTTGAAAGATGCTGAGAAA-TATTTTGTTGGAAATTCCCATTT 1727
|||||||||||| |||| ||||||||| |||| || | |||||||||||||||| ||||
Sbjct 1672 TGTCCGGTTATTCTATTCCTGAAAGATGATGAGGAAGT-TTTTGTTGGAAATTCCGATTT 1730
Query 1728 TTGCTCTGCATTCAAAAGCAAACTTGAAGTTATCTCAGATAACCTAATTGTGATCTGTTC 1787
||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||
Sbjct 1731 CTGCTCTGCATTCAAAAGCAAAGTTGAAGAAATCCCAGATAACGTAATTGTGATCTGTTC 1790
Query 1788 CCAGACACATTCTGATAATCCCAAGGAGAAGGGTATTGGACGTCTAACGGATCTCTTTGT 1847
|||||||| |||||||||| ||||||||||| |||||||| ||||||| |||||||||
Sbjct 1791 ACAGACACACTCTGATAATCACAAGGAGAAGGATATTGGACTTCTAACGAATCTCTTTGG 1850
Query 1848 GAATAAAGTTACTATATAC-ATGCCACAGGGTGAGGAACTTCTTAAATCTTGGAAGTATC 1906
|||||||||||| || ||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 1851 GAATAAAGTTACCATTTACGA-GCCACAGGGTGAGGATCTTCTTAAATCTTGGAAGTATC 1909
Query 1907 ATTTGGATCGTGATGCTGAGACTTTGAAAATGAAGGCTAATTACAATCACTTGCGCATGG 1966
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1910 ATTTGGATCGTGATGCTGAGACTTTGAAAACAAAGGCTAATCGCAATCACTTGCGCATGG 1969
Query 1967 TGTTGGGACGATGTGGTATAGAGTGTGAAGGCATTGAGACGCTGTGCATGAAGGATCTCA 2026
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1970 TGTTGGGACGATTTGGTATAGATTGTGAAGGCATTGAGACGCTGTGCATGAAGGATCTCA 2029
Query 2027 CACTTCGAAGAGACAGTGCAGAAAAGATCATTGGATGGGCTCTTAGTCACCATATAAAGT 2086
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 CACTTCAAAGTGACAGTGCAGAAAAGATCATTGGATGGGCTCTTAGTCACCATATAAAGT 2089
Query 2087 CTAATCCTGGTGCTGATCCAGATGTTAGGGTTATTTTGTCTCTTGAGAGCTTAAAATGTG 2146
|||||||| |||||||||||||||||| || | |||||||||||| |||||||||||||
Sbjct 2090 GTAATCCTGATGCTGATCCAGATGTTAGTGTCACTTTGTCTCTTGATAGCTTAAAATGTG 2149
Query 2147 GAATAGAACTCTT---GGAAATTG-AA-T----CTAAGA-----A-G---TCTCTCAAGG 2188
||||||||||||| || ||| || | |||||| | | ||||||||||
Sbjct 2150 GAATAGAACTCTTTCAGGCTCTTGTAAATGAAACTAAGAGCCCGAAGAAGTCTCTCAAGG 2209
Query 2189 ACATTGTGACAGAAAAT-ACGTTTGAAATAAGTGATATTATTCCGCCCAGTGAAATTGGT 2247
|||||||||||||| | | ||||| ||||||||| |||||||||||||||| ||||||
Sbjct 2210 ACATTGTGACAGAAGTTGAT-TTTGAGATAAGTGATGTTATTCCGCCCAGTGACATTGGT 2268
Query 2248 GTTACATTCGATGACATTGGGGCACTTGAGAATGTCAAAGACACTTTAAAGGAACTGGTT 2307
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2269 GTTACATTTGATGACATTGGGGCACTTGAGAATGTCAAAGACACTTTAAAGGAATTGGTT 2328
Query 2308 ATGCTTCCTTTTCAATGGCCTGAACTTTTCTGC-AAGGGGCAATTAACAAAGCCTTGTAA 2366
||||||||||| ||| ||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 2329 ATGCTTCCTTTACAACGGCCTGAACTTTTCTGCCAAGGG-CAATTAACAACGCCTTGTAA 2387
Query 2367 CGGAATTCTCTTATTTGGACCTTCTGGAACTGGAAAGACCATGCTTGCAAAGGCAGTGGC 2426
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2388 AGGAATTCTCTTATTTGGACCTGCTGGAACTGGAAAGACCATGCTTGCAAAGGCATTGGC 2447
Query 2427 AACGGAAGCTGGTGCTAACCTCATCAACATGTCAATGTCAAGGTGGTTTAGTGAGGGTGA 2486
|||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 2448 AACGGAAGCTGGTGCTAATTTGATCAACATCTCAATGTCAAGGTGGTTTAGTGAGGGTGA 2507
Query 2487 GAAATATGTCAAAGCTGTCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTT 2546
|||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
Sbjct 2508 GAAATATGTCAAAGCTGTCTTTTCGTTGGCCAGTAAAATCTCCCCTAGCATTATCTTTAT 2567
Query 2547 GGACGAGGTGGAAAGCATGCTACATCGGTACAGGCTGAAGACGAAAAATGAGTTCATAAT 2606
|||| ||||||| ||||||||| || | | | ||||||| |||||||||||||||
Sbjct 2568 GGACAAGGTGGACAGCATGCTAT-TCCA-AGAT-CAGAAGACGGCAAATGAGTTCATAAT 2624
Query 2607 AAATTGGGACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAA 2666
|||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||
Sbjct 2625 AAATTGGGACGGTCTGAGGACAAACGAAAAGGAACATGTTCTGGTTCTTGCATCCACAAA 2684
Query 2667 TAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGGTTGATGGTGGG 2726
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2685 TAGACCTTTTGACCTTGATGAGGCTGTCATTAGAAGGTTGCCTCATAGGTTGATGGTGGG 2744
Query 2727 ACTACCAGATGCTC-GTAGTAGATCAAAGATATTGAAGGTGATACTTTCAAAAGAAGACT 2785
|||||||||||||| | |||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 2745 ACTACCAGATGCTCTG-AGTAGAGCAAAGATATTGAAGGTTATACTTGCAAAAGAAGACT 2803
Query 2786 TGTCCCCTGATTTCGATATTGATG-AGGTTGCTAGTATGACAAATGGATATTCTGGAAAC 2844
||||||||||||| ||||| |||| || ||||||||||||| ||||||||||||||||||
Sbjct 2804 TGTCCCCTGATTTTGATATCGATGCAG-TTGCTAGTATGACTAATGGATATTCTGGAAAC 2862
Query 2845 GATCTTAAGAATCTATGTGTTACTGCTGCCCGCCGTCGAATCATAG-AGATAGTGGAGAA 2903
||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 2863 GATCTTAAGAATCTATGTGTTACTGCTGCCCGCTGTCGAATCA-AGGAGATAGTGGAGAA 2921
Query 2904 GGAAAAAAGTGAGCGAGATGCTGCTGTGGCTGAAGGCAGAGTTCCTCCAGCTGGAAGTGG 2963
||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 2922 GGAAAAAAGTGAGCGAGATGCTGCTCTGGCTGAAGGAAGAGTTCCTCCAGCACGAAGTGG 2981
Query 2964 AGGTTCTGATCTCCGAGTTTTAAAAATGGAGGATTTCAGAAACGCACTCGAGCTGGTGAG 3023
| |||||||| |||||| |||||| || |||||||||||||||||||| |||||||||||
Sbjct 2982 AAGTTCTGATATCCGAGCTTTAAACATAGAGGATTTCAGAAACGCACTTGAGCTGGTGAG 3041
Query 3024 TATGAGCATCTCATCAAAGTCTGTCAACATGACAGCGCTTCGACAATGGAACGAAGACTA 3083
||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||| | ||
Sbjct 3042 TATGAGCGTCTCATCAGAGTCTGTGAACATGACAGCGCTTCGAAAATGGAACGAACATTA 3101
Query 3084 CGGGGAAGGTGGATCCAG-AA--GGAATGAATCATT 3116
|||||||||||||||||| || |||| ||| ||||
Sbjct 3102 CGGGGAAGGTGGATCCAGTAAATGGAACGAA-CATT 3136
Score = 841 bits (455), Expect = 0.0
Identities = 651/739 (88%), Gaps = 39/739 (5%)
Strand=Plus/Plus
Query 582 GATGTCTAAAGTTACAGTCATATCTGGTGGGGAACAGGTTCCTGCAGGAAAATTTCTACA 641
||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 558 GATGTCTAAAGTTGCAGTCAAATCTGGTGGGGAACAGGTTCCTGCAGCAAAATTTCTACA 617
Query 642 GTTAGAGAGAGAGGCAAGAGATCCATCAAGAGTTTCGATGTTGGCATCGCTTGAAATCTC 701
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 618 GTTAGAGAGAGAGGCAAGAGATCCATCAACTGTTTCGATTTTGGCATCGCTTGAAATCTC 677
Query 702 GCGTGAGAATCCTGCTACTTCTGGGGTCCAAGAAGGCGTGGAAGGATATTTTCCTGTTAA 761
|||||||||||||||||||||||| |||||||||||| | | || || | || |
Sbjct 678 GCGTGAGAATCCTGCTACTTCTGGCGTCCAAGAAGGC---GCA-GA-GCTTGAAT-TTGA 731
Query 762 CAATCAAAGTAATAAAGCTGCAGACAGTGGAGTAGTCATCAGCCACAACCAAGATTCCAA 821
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 732 CAATCAAAGTAATAAAGCTGCAGACAGTGGAGTAGTCAGCAGCCACAACCAAGATTCCAA 791
Query 822 AATGGAGATATTAGATGAGGAAAACGAGGTGACAAGAAACCGGAGGGCACAACAAGCTGC 881
||| | || || ||||||||||||| || ||||| || ||||||||||
Sbjct 792 AAT---G------GA-GA--AAAACGAGGTGAC----AA--GGAGGCCAGAACAAGCTGC 833
Query 882 AAAG-TTCAGGGAATATATTCGAGCTGGTATTGTTGACGGCAAAAGATTGGAATTTTCAT 940
||| |||||| ||||||||| |||||| |||||||| ||| |||||||| |||||||||
Sbjct 834 -AAGATTCAGGAAATATATTCAAGCTGGAATTGTTGAAGGCGAAAGATTGAAATTTTCAT 892
Query 941 TCGAAAATTTTCCTTATTATTTGAGTGAGCATACAAAGTATGTCTTACTAGCTGTTTCAG 1000
||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 893 TCGAAAATTTTCCTTATTATTTGAGTGAGAATACAAAGAACGTCTTACTAGCTGTTTCAC 952
Query 1001 ATATGCATCTGAA-TAAGATGAATATAGGATATGCCCCATATGCATCCGACTTGACCATT 1059
|||| |||||||| |||| ||||| ||||||||||| |||||| |||||||| |||| |
Sbjct 953 ATATACATCTGAACAAAGA-GAATACAGGATATGCCCTATATGCCTCCGACTTTACCACT 1011
Query 1060 TTGAATCCAAGGATATTGCTTTCTGGTCCTGCAGGGTCTGAAATATACCAAGAGATATTA 1119
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1012 TTGAATCCAAGGATATTGCTTTCTGGTCCTGCAGGAACTGAAATATACCAAGAGATATTA 1071
Query 1120 GCTAAAGCACTTGCCAATT-CATTCAATGCGAAATTGCTAATATTTGACAGCAATCCAAT 1178
||||||||||||||||| | | ||||| |||||||||||||| |||||| || |||||||
Sbjct 1072 GCTAAAGCACTTGCCAAATAC-TTCAAGGCGAAATTGCTAATTTTTGACGGCCATCCAAT 1130
Query 1179 TTTGGGGGTTATGACTGCTAAAGAATTTGAGTCACTGATGAATGGACCTGC-------G- 1230
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1131 TTTGGGGGTTATGACTGCTGAAGAATTTGAGTCACTGATGAATGGACCTGCTTCTAAAGA 1190
Query 1231 -CTCATTGATCGAGGAAAAAGCTTAGATTTGTCATCAGGTCAAGGAGATTCATCTATCCC 1289
|||||||| ||||| |||||||| ||||||||| ||||| |||||| |||||||| |||
Sbjct 1191 GCTCATTGACCGAGGGAAAAGCTTGGATTTGTCAGCAGGTGAAGGAGGTTCATCTAGCCC 1250
Query 1290 TTCTCCTGCTACTTCTCCC 1308
|||||||||||||||||||
Sbjct 1251 TTCTCCTGCTACTTCTCCC 1269
Score = 505 bits (273), Expect = 1e-141
Identities = 471/563 (84%), Gaps = 28/563 (5%)
Strand=Plus/Plus
Query 1 ATGGTGTCACCGGGACGGAGTGAATCTATCTCCGGCGAGAACAATACAACC-CTTCCCGA 59
||||||||| || |||||||||||||| ||||||| | |||||||||||| | ||||||
Sbjct 1 ATGGTGTCATCGCCACGGAGTGAATCTACCTCCGGCAACAACAATACAACCAC-TCCCGA 59
Query 60 CGGAAGCAGCGGCAAGAGAATTCC-TCCATCGTCTCCTTCCGG-AGACAAATCTCCTTCA 117
|||| |||||||||||||| ||| ||| || ||| ||| ||| ||| ||||||||||||
Sbjct 60 TGGAATCAGCGGCAAGAGAACTCCTTCC-TCTTCTTCTT-CGGAAGATAAATCTCCTTCA 117
Query 118 TCTAAACGCTCAAAGTTGGGAGATGGCAGCGGCGCTTCTACCGATAGCAGTGAAGCTCCA 177
|| |||||| ||||||||||||||||| |||||||||||| ||| | |||| || |||||
Sbjct 118 TCCAAACGCCCAAAGTTGGGAGATGGCGGCGGCGCTTCTATCGAGAACAGTAAACCTCCA 177
Query 178 ACCTCCGAAGACGCCAAGATTGC--C-GAAGGC-TTAACACCGACT-TT-------G--- 222
||||||| ||| ||||||||||| | ||| | | |||| || || |
Sbjct 178 ACCTCCGGAGAAGCCAAGATTGCGGCGGAA-CCACCACCACCTCCTGTTGCGGAAGGCTC 236
Query 223 ----CCAGATAGTTCTTTTTCGGGATGGACATATCGACACTGTACATTTAAGACCCCATG 278
||||||||||||||||| ||||||| ||||| |||| ||||||||||||| |||||
Sbjct 237 AACACCAGATAGTTCTTTTTCCGGATGGAAATATCAACACAGTACATTTAAGACTCCATG 296
Query 279 GTGTAAATTGCTATCACAGTCTGCAAAGCAACAAAACCTTTGCCTTTATGA-ATCTTCAT 337
|||| |||||||||| |||||||| |||| | |||| || | ||| | | ||| || |
Sbjct 297 GTGTCGATTGCTATCAGAGTCTGCACAGCATCCAAACGTTAACATTTCT-ACATCGTCCT 355
Query 338 GCACTTTTGGTTCTTGTTTAACCTCCGACTTCACATTACATGACCGGAATCTCGGTGCAT 397
|||| ||||||||||| |||||||| || |||||||| | || |||||||| |||||||
Sbjct 356 TCACTATTGGTTCTTGTCTAACCTCCAACCTCACATTAAAAGATCGGAATCTTGGTGCAT 415
Query 398 TTTTGTGCAAGATCACAAGAATTCAGCGCAATGGCAATGTTGTAGCGGTTCTAGATATCA 457
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TATTGTGCAAGATCACAAGAATTCAGCGCAATGGCAATGTTGTAGCGGTTCTAGATATCA 475
Query 458 CAGGAACCGGGGGACCTCTGCGGATAAATAAAGCATTTGTCATCAAGAATGTCAGCCATG 517
||||||||||||||||| ||||||||||| |||| ||| || |||||||||||||||||
Sbjct 476 CAGGAACCGGGGGACCTGTGCGGATAAATGGAGCACTTGCCAACAAGAATGTCAGCCATG 535
Query 518 AGCTACACTCTGGTGACGAATTG 540
|||||||||||||||||||||
Sbjct 536 TCCTACACTCTGGTGACGAATTG 558
> Ahg329179 jgi|Araly1|329179|fgenesh1_pm.C_scaffold_7001406
Length=3420
Score = 1216 bits (658), Expect = 0.0
Identities = 1148/1369 (84%), Gaps = 96/1369 (7%)
Strand=Plus/Plus
Query 1830 TCTAACGGATCTCTTTGTGAATAAAGTTACTATAT-ACATGCCACAGGGTGAGGAACTTC 1888
|||| |||| ||||||| |||||||||| |||| | | |||||||||| |||||||||||
Sbjct 2058 TCTAGCGGAGCTCTTTGAGAATAAAGTTCCTAT-TCAAATGCCACAGGATGAGGAACTTC 2116
Query 1889 TTAAATCT-TGGAAGTATCATTTGGATCGTGATGCTGAGACTTT-GAAAATGAAGGCTAA 1946
||| || | |||||| |||| |||||||||||||||||| ||| |||| ||||||||||
Sbjct 2117 TTACAT-TGTGGAAGCATCAAATGGATCGTGATGCTGAGA-TTTCGAAAGTGAAGGCTAA 2174
Query 1947 TTACAATCACTTGCGCATGGTGTTGGGACGATGTGGTATAGAG-TGTGAAGGCATTGAGA 2005
|| || ||||||||||||||||||||||| ||||||| | | | |||||||| |||||||
Sbjct 2175 TTTCAGTCACTTGCGCATGGTGTTGGGACTATGTGGTCT-GGGATGTGAAGGAATTGAGA 2233
Query 2006 CGCTGTGCATGAAGGATCTCACACTTCGAAGAGACAGTGCAGAAAAGATCATTGGATGGG 2065
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2234 CGCTGTGCATGAAGGATCTCACACTTCAAAGCGACAGTGCAGAAAAGATCATTGGATGGG 2293
Query 2066 CTCTTAGTCACCATATAAAGTC--TAATCCTGGTGCTGATCCAGATGTTAGGGTTATTTT 2123
|| ||||| ||||||| ||| | |||||||| | ||||||| | | || |||||||||
Sbjct 2294 CTTTTAGTAACCATAT-AAG-CAATAATCCTGATACTGATCC--A-GCTAAGGTTATTTT 2348
Query 2124 GTCTCTTGAGAGCTTAAAATGTGGAATAGAACTCTT-----G-G-----AAA---T-T-- 2166
||||| ||||||| || ||| |||||||| |||||| | | ||| | |
Sbjct 2349 GTCTCGTGAGAGCATAGAATTTGGAATAGGACTCTTACAGGGTGATCTTAAAGGTTCTAC 2408
Query 2167 GA-ATCTAAGAAGTCTCTCAAGGACATTGTGACAGAAAAT-ACGTTTG-A-A-A------ 2215
|| || |||| |||||||||||||||||||||||||||| | ||||| | | |
Sbjct 2409 GAGCTCAAAGAGGTCTCTCAAGGACATTGTGACAGAAAATGA-GTTTGAAGAGAGGCTTC 2467
Query 2216 TAAGTGATATTATTCCGCCCAGTGAAATTGGTGTTACATTCGATGACATTGGGGCACTTG 2275
|||||||| | |||| ||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 2468 TAAGTGATGTAATTCTGCCCAGTGACATTGATGTTACATTTGATGACATTGGGGCACTTG 2527
Query 2276 AGAATGTCAAAGACACTTTAAAGGAACTGGTTATGCTTCCTTTTCAATGGCCTGAACTTT 2335
|||| |||||||| || |||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 2528 AGAAAGTCAAAGATACCTTAAAGGAACTGGTTATGCTCCCTTTACAACGGCCTGAACTTT 2587
Query 2336 TCTGCAAGGGGCAATTAACAAAGCCTTGTAACGGAATTCTCTTATTTGGACCTTCTGGAA 2395
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 2588 TCTGCAAGGGGCAATTAACAAAGCCTTGTAAAGGAATTCTCTTATTTGGACCTCCTGGTA 2647
Query 2396 CTGGAAAGACCATGCTTGCAAAGGCAGTGGCAACGGAAGCTGGTGCTAACCTCATCAACA 2455
|||||||||||||||||||||| |||||||||| |||||||| ||| ||| |||||||||
Sbjct 2648 CTGGAAAGACCATGCTTGCAAAAGCAGTGGCAAAGGAAGCTGATGCGAACTTCATCAACA 2707
Query 2456 TGTCAATGTCAAG------------GTGGTTTAGTGAGGGTGAGAAATATGTCAAAGCTG 2503
| ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 2708 TCTCAATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTG 2767
Query 2504 TCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTTGGACGAGGTGGAAAGCA 2563
||||||| ||||| |||||||| ||||| || |||||||| ||||||||||||| ||||
Sbjct 2768 TCTTTTCTTTGGCCAGTAAAATGTCCCCTTGCGTTATCTTTGTGGACGAGGTGGACAGCA 2827
Query 2564 TGCTA---C---------A---TC-GGTAC----AGGC-T---GAAGACGAAAAATGAGT 2599
||||| | | | || || |||| | ||||| |||||||||||
Sbjct 2828 TGCTAGGCCGAAGAGAAAACCGACAGGGACATGAAGGCATGCGGAAGATGAAAAATGAGT 2887
Query 2600 TCATAATAAATTGGGACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAG 2659
|||| || ||||||||||||| | ||| || |||| |||||||||||||||||||||||
Sbjct 2888 TCATGATGCATTGGGACGGTCTAACGACTAAGGAAATGGAACGTGTTCTGGTTCTTGCAG 2947
Query 2660 CCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCA-TAGGTTG 2718
|||||||| | |||||||||||||| ||||||||||||||| ||||||| || |||||||
Sbjct 2948 CCACAAATCGGCCTTTTGACCTTGATGAGGCTGTCATTAGACGGTTGCC-CAGTAGGTTG 3006
Query 2719 ATGGTGGGACTACCAGATGC-TCGTAGTAGATCAAAGATATTGAAGGTGATACTTTCAAA 2777
|||||||||||||||||| | || | |||| || | ||||| ||||| |||||| ||||
Sbjct 3007 ATGGTGGGACTACCAGATACATCAAA-TAGAGCATATATATTAAAGGTTATACTTGCAAA 3065
Query 2778 AGAAGACTTGTCCCCTGATTTCGATATTGATGAGG-TTGCTAGTATGACAAATGGATATT 2836
|||| || ||||||||| ||| || ||| || || ||||||||||||| ||||||||||
Sbjct 3066 AGAAAACGTGTCCCCTGGTTTGGACATTAATT-GGATTGCTAGTATGACTAATGGATATT 3124
Query 2837 CTGGAAACGATCTTAAGAATCTATGTGTTACTGCTGCCCGCCGTCGAATCATAG-AGATA 2895
|||||| ||||||||||||||||||||||||||||||| ||||| ||||| || || |
Sbjct 3125 CTGGAAGTGATCTTAAGAATCTATGTGTTACTGCTGCCCACCGTCCAATCA-AGGAGCT- 3182
Query 2896 GT-GGAGAAGGAAAAAAGTGAGCGAGATGCTGCTGTGGCTGAAGGCAGAGTTCCTCCAGC 2954
|| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||
Sbjct 3183 GTTGGAGAAGGAAAAAAGAGAGCGAGATGCTGCTCTGGCTGAAGGCAAAGTTCCTCCAGC 3242
Query 2955 TGGAAGTGGAGGTTCTGATCTCCGAGTTTTAAAAATGGAGGATTTCAGAAACGCAC-TCG 3013
| ||| ||| ||||||||||||||| |||||| ||||||||||||||| |||||| | |
Sbjct 3243 TCTAAGAGGAAGTTCTGATCTCCGAGCTTTAAACATGGAGGATTTCAGATACGCACAT-G 3301
Query 3014 AGCTGGTGAGTATGAGCATCTCATCAAAGTCTGTC-AACATGACAGCGCTTCGACAATGG 3072
||| |||| || |||| ||| || | |||||| | ||||||||| |||||| |||||||
Sbjct 3302 AGCGGGTGTGTGCGAGCGTCTTATTAGAGTCTG-CGAACATGACAACGCTTCAACAATGG 3360
Query 3073 AACGAAGACTACGGGGAAGGTGGATCCAGAAGGAATG-AATCATTCAGC 3120
|||||| ||||||||||||||||||||||| | | | |||||||||||
Sbjct 3361 AACGAACTCTACGGGGAAGGTGGATCCAGAAAGCA-GCAATCATTCAGC 3408
Score = 433 bits (234), Expect = 5e-120
Identities = 353/410 (86%), Gaps = 10/410 (2%)
Strand=Plus/Plus
Query 1425 GGGACCACCTTATGGGTTTATAGGGAAAGTACTGTTAGTATTTGATGAGAATCCTTCAGC 1484
|||||| ||| | ||| ||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 1611 GGGACCTCCTAAAGGGATTACAGGGAAAGTAATTTTAGTATTTGATGAGAATCCTTCAGC 1670
Query 1485 TAAAGTGGGTGTTAGATTTGAGAATCCAGTACCTGATGGAGTTGATCTTGGTCAACTGTG 1544
||||||||||||||||||||| || ||| ||||||||||||||||||||||| |||||||
Sbjct 1671 TAAAGTGGGTGTTAGATTTGATAAGCCAATACCTGATGGAGTTGATCTTGGTGAACTGTG 1730
Query 1545 TGAAATGGGACATGGGTTCTTCTGCAGTGCTACTGATCTTCAGTTCGAAAGCTCG-GCAT 1603
||||| ||||||||||||||||||| ||||||||||| ||||| |||||||| | |
Sbjct 1731 TGAAACAGGACATGGGTTCTTCTGCAAAGCTACTGATCTGAAGTTCAAAAGCTCGAGT-T 1789
Query 1604 CTGACGATCTAAATGAATTACTTGTTACCAAATTGTTTGAGGTTGCCCATGA-TCAGAGC 1662
|||| |||||| | |||||||||||| || |||||||||||||| |||| | | |||||
Sbjct 1790 CTGAGGATCTAGCTAAATTACTTGTTAACACATTGTTTGAGGTTGTCCAT-ACTGAGAGC 1848
Query 1663 AGAACTTGTCCGGTTA-TTATATTTTTGAAAGATGCTGAGAAATATTTTGTTGGAAATTC 1721
|||||| ||||| ||| || |||||||||||||||||||||||| | |||||||||||||
Sbjct 1849 AGAACTCGTCCG-TTAATTCTATTTTTGAAAGATGCTGAGAAATCTGTTGTTGGAAATTC 1907
Query 1722 CCATTTTTGCTCTGCATTCAAAAGCAAACTTGAAGTTATCTC--AGATAACCTAATTGTG 1779
| |||| | |||||| ||| ||| || ||||||| | ||||| ||| ||| ||||||||
Sbjct 1908 CGATTTGTACTCTGCGTTCCAAATCAGACTTGAA-T-ATCTCCCAGACAACGTAATTGTG 1965
Query 1780 ATCTGTTCCCAGACACATTCTGATAATCCCAAGGAGAAGGGTATTGGACG 1829
||| |||| |||||||| |||||| ||| || |||||||| |||||||||
Sbjct 1966 ATCGGTTCACAGACACACTCTGATCATCTCATGGAGAAGGATATTGGACG 2015
Score = 248 bits (134), Expect = 2e-64
Identities = 340/431 (79%), Gaps = 47/431 (11%)
Strand=Plus/Plus
Query 790 GGAGTAGTCA-TCAGCCACAACCAAGATTCCAAAATGGAGATATTAGATGAGGAA-AACG 847
|||| ||||| | | |||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 847 GGAGCAGTCAGT-ACCCACAACCAAGATTCCAAAATGCAGATATTAGATGA-GAAGAACG 904
Query 848 AGGTGACAAG-AA---AC--CGGAG-GGC-ACA--A--CAA--G-CTGCAA-----AGT- 886
|||||||||| || || | || | ||| | ||| | |||||| | |
Sbjct 905 AGGTGACAAGTAATTCACAAC-AAGCTTCAACATCAGGCAATGGTCTGCAATCTGCAATA 963
Query 887 -TCAGGGAATATATTCGAGCTGGTATTGTTGACGGC-AAAAGATTGGAATTTTCATTCGA 944
|||| ||| |||| ||||||||||||||| ||| |||| |||||| ||||| || |
Sbjct 964 GTCAGAGAAGGCATTCAAGCTGGTATTGTTGAAGGCGAAAA-CTTGGAAGTTTCAATC-A 1021
Query 945 AAA-TTTTCCTTATTATTTGAGTGAGCATACAAAGTATGTCTTACTAGC-TGTTTCAGAT 1002
||| |||||| |||||||||||||| |||||||| | |||| || | || |||| |
Sbjct 1022 AAACTTTTCCCTATTATTTGAGTGAATATACAAAGGCTACCTTAATA-CATGCTTCATTT 1080
Query 1003 ATGCATCTGAATAAGATGAATATAGGATATGCCCCA-TATG-CATCCGACTTGA-CCATT 1059
|| |||||| |||| || | || ||||| |||| | || | |||||| ||| ||| |
Sbjct 1081 ATACATCTG---AAGA--AA-AAAGAATATG-CCCACTTTGTC-TCCGACATGACCCA-T 1131
Query 1060 TTGAATCCAAGGATATTGCTTTCTGGTCCTGCAGGGTCTGAAATATACCAAGAGATATTA 1119
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1132 CTGAATCCAAGGATATTGCTTTCTGGTCCCGCAGGGTCTGAAATATACCAAGAGACGTTA 1191
Query 1120 GCTAAAGCACTTGCCAATT-CATTCAATGCGAAATTGCTAATATTTGACAGCAATCCAAT 1178
|||||||||||||||||| | | | |||||||||||||||||||||||| || ||||
Sbjct 1192 GCTAAAGCACTTGCCAATGACCTGGAC-GCGAAATTGCTAATATTTGACAGCCATTCAAT 1250
Query 1179 TTTGGGGGTTA 1189
||||||| |||
Sbjct 1251 TTTGGGGTTTA 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119260557095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5