BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62130.1 Length=3157 Score E Sequences producing significant alignments: (Bits) Value Ahg315176 jgi|Araly1|315176|fgenesh1_pm.C_scaffold_2000209 2483 0.0 Ahg329179 jgi|Araly1|329179|fgenesh1_pm.C_scaffold_7001406 1216 0.0 > Ahg315176 jgi|Araly1|315176|fgenesh1_pm.C_scaffold_2000209 Length=3144 Score = 2483 bits (1344), Expect = 0.0 Identities = 1679/1836 (91%), Gaps = 41/1836 (2%) Strand=Plus/Plus Query 1310 GTTCATTTGGAACTCCAATTTCTGGTTTACTGATACTTCATTGGGGAAAAACACTTGCAG 1369 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1313 GTTCATTTGGAACTCCAATTTCTGGTTTACTGATACTTCATTGGGAAAAAACACTTGCAG 1372 Query 1370 GGGACAGGGTAAGATTCTTCGGTGATGAGTTGTGTCCGGGGCTACCTACCTCAAGGGGAC 1429 | ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| Sbjct 1373 GTGACAGGGTAAGATTCATAGGTGATGAGTTGTGTTCGGGGCTACCTACCTCAAGGGGAC 1432 Query 1430 CACCTTATGGGTTTATAGGGAAAGTACTGTTAGTATTTGATGAGAATCCTTCAGCTAAAG 1489 ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1433 CACCTTATGGGGTTAGAGGGAAAGTACTTTTAGTATTTGATGAGAATCCTTCAGCTAAAG 1492 Query 1490 TGGGTGTTAGATTTGAGAATCCAGTACCTGATGGAGTTGATCTTGGTCAACTGTGTGAAA 1549 |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| Sbjct 1493 TGGGTGTTAGATTTGAGAATCCAGTAGTTGATGGCGTTGATCTTGGTGAACTGTGTGAAA 1552 Query 1550 TGGGACATGGGTTCTTCTGCAGTGCTACTGATCTTCAGTTCGAAAGCTCGGCATCTGACG 1609 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct 1553 TGGGACATGGGTTCTTCTGCAGTGCTACTGATCTTCAGTTTGAAAGCTCGGGTTCTGAGG 1612 Query 1610 ATCTAAATGAATTACTTGTTA-CCAAATTGTTTGAGGTTGCCCATGATCAGAGCAGAACT 1668 ||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| Sbjct 1613 ATCTAAATGAATTACTTGTTAGCCAA-TTGTTTGAGGTTGCCCATGATGAGAGCAGAACT 1671 Query 1669 TGTCCGGTTATTATATTTTTGAAAGATGCTGAGAAA-TATTTTGTTGGAAATTCCCATTT 1727 |||||||||||| |||| ||||||||| |||| || | |||||||||||||||| |||| Sbjct 1672 TGTCCGGTTATTCTATTCCTGAAAGATGATGAGGAAGT-TTTTGTTGGAAATTCCGATTT 1730 Query 1728 TTGCTCTGCATTCAAAAGCAAACTTGAAGTTATCTCAGATAACCTAATTGTGATCTGTTC 1787 ||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||||| Sbjct 1731 CTGCTCTGCATTCAAAAGCAAAGTTGAAGAAATCCCAGATAACGTAATTGTGATCTGTTC 1790 Query 1788 CCAGACACATTCTGATAATCCCAAGGAGAAGGGTATTGGACGTCTAACGGATCTCTTTGT 1847 |||||||| |||||||||| ||||||||||| |||||||| ||||||| ||||||||| Sbjct 1791 ACAGACACACTCTGATAATCACAAGGAGAAGGATATTGGACTTCTAACGAATCTCTTTGG 1850 Query 1848 GAATAAAGTTACTATATAC-ATGCCACAGGGTGAGGAACTTCTTAAATCTTGGAAGTATC 1906 |||||||||||| || ||| | ||||||||||||||| |||||||||||||||||||||| Sbjct 1851 GAATAAAGTTACCATTTACGA-GCCACAGGGTGAGGATCTTCTTAAATCTTGGAAGTATC 1909 Query 1907 ATTTGGATCGTGATGCTGAGACTTTGAAAATGAAGGCTAATTACAATCACTTGCGCATGG 1966 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 1910 ATTTGGATCGTGATGCTGAGACTTTGAAAACAAAGGCTAATCGCAATCACTTGCGCATGG 1969 Query 1967 TGTTGGGACGATGTGGTATAGAGTGTGAAGGCATTGAGACGCTGTGCATGAAGGATCTCA 2026 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1970 TGTTGGGACGATTTGGTATAGATTGTGAAGGCATTGAGACGCTGTGCATGAAGGATCTCA 2029 Query 2027 CACTTCGAAGAGACAGTGCAGAAAAGATCATTGGATGGGCTCTTAGTCACCATATAAAGT 2086 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2030 CACTTCAAAGTGACAGTGCAGAAAAGATCATTGGATGGGCTCTTAGTCACCATATAAAGT 2089 Query 2087 CTAATCCTGGTGCTGATCCAGATGTTAGGGTTATTTTGTCTCTTGAGAGCTTAAAATGTG 2146 |||||||| |||||||||||||||||| || | |||||||||||| ||||||||||||| Sbjct 2090 GTAATCCTGATGCTGATCCAGATGTTAGTGTCACTTTGTCTCTTGATAGCTTAAAATGTG 2149 Query 2147 GAATAGAACTCTT---GGAAATTG-AA-T----CTAAGA-----A-G---TCTCTCAAGG 2188 ||||||||||||| || ||| || | |||||| | | |||||||||| Sbjct 2150 GAATAGAACTCTTTCAGGCTCTTGTAAATGAAACTAAGAGCCCGAAGAAGTCTCTCAAGG 2209 Query 2189 ACATTGTGACAGAAAAT-ACGTTTGAAATAAGTGATATTATTCCGCCCAGTGAAATTGGT 2247 |||||||||||||| | | ||||| ||||||||| |||||||||||||||| |||||| Sbjct 2210 ACATTGTGACAGAAGTTGAT-TTTGAGATAAGTGATGTTATTCCGCCCAGTGACATTGGT 2268 Query 2248 GTTACATTCGATGACATTGGGGCACTTGAGAATGTCAAAGACACTTTAAAGGAACTGGTT 2307 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2269 GTTACATTTGATGACATTGGGGCACTTGAGAATGTCAAAGACACTTTAAAGGAATTGGTT 2328 Query 2308 ATGCTTCCTTTTCAATGGCCTGAACTTTTCTGC-AAGGGGCAATTAACAAAGCCTTGTAA 2366 ||||||||||| ||| ||||||||||||||||| ||||| |||||||||| ||||||||| Sbjct 2329 ATGCTTCCTTTACAACGGCCTGAACTTTTCTGCCAAGGG-CAATTAACAACGCCTTGTAA 2387 Query 2367 CGGAATTCTCTTATTTGGACCTTCTGGAACTGGAAAGACCATGCTTGCAAAGGCAGTGGC 2426 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 2388 AGGAATTCTCTTATTTGGACCTGCTGGAACTGGAAAGACCATGCTTGCAAAGGCATTGGC 2447 Query 2427 AACGGAAGCTGGTGCTAACCTCATCAACATGTCAATGTCAAGGTGGTTTAGTGAGGGTGA 2486 |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| Sbjct 2448 AACGGAAGCTGGTGCTAATTTGATCAACATCTCAATGTCAAGGTGGTTTAGTGAGGGTGA 2507 Query 2487 GAAATATGTCAAAGCTGTCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTT 2546 |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| | Sbjct 2508 GAAATATGTCAAAGCTGTCTTTTCGTTGGCCAGTAAAATCTCCCCTAGCATTATCTTTAT 2567 Query 2547 GGACGAGGTGGAAAGCATGCTACATCGGTACAGGCTGAAGACGAAAAATGAGTTCATAAT 2606 |||| ||||||| ||||||||| || | | | ||||||| ||||||||||||||| Sbjct 2568 GGACAAGGTGGACAGCATGCTAT-TCCA-AGAT-CAGAAGACGGCAAATGAGTTCATAAT 2624 Query 2607 AAATTGGGACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAA 2666 |||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| Sbjct 2625 AAATTGGGACGGTCTGAGGACAAACGAAAAGGAACATGTTCTGGTTCTTGCATCCACAAA 2684 Query 2667 TAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGGTTGATGGTGGG 2726 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2685 TAGACCTTTTGACCTTGATGAGGCTGTCATTAGAAGGTTGCCTCATAGGTTGATGGTGGG 2744 Query 2727 ACTACCAGATGCTC-GTAGTAGATCAAAGATATTGAAGGTGATACTTTCAAAAGAAGACT 2785 |||||||||||||| | |||||| |||||||||||||||| |||||| |||||||||||| Sbjct 2745 ACTACCAGATGCTCTG-AGTAGAGCAAAGATATTGAAGGTTATACTTGCAAAAGAAGACT 2803 Query 2786 TGTCCCCTGATTTCGATATTGATG-AGGTTGCTAGTATGACAAATGGATATTCTGGAAAC 2844 ||||||||||||| ||||| |||| || ||||||||||||| |||||||||||||||||| Sbjct 2804 TGTCCCCTGATTTTGATATCGATGCAG-TTGCTAGTATGACTAATGGATATTCTGGAAAC 2862 Query 2845 GATCTTAAGAATCTATGTGTTACTGCTGCCCGCCGTCGAATCATAG-AGATAGTGGAGAA 2903 ||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| Sbjct 2863 GATCTTAAGAATCTATGTGTTACTGCTGCCCGCTGTCGAATCA-AGGAGATAGTGGAGAA 2921 Query 2904 GGAAAAAAGTGAGCGAGATGCTGCTGTGGCTGAAGGCAGAGTTCCTCCAGCTGGAAGTGG 2963 ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| Sbjct 2922 GGAAAAAAGTGAGCGAGATGCTGCTCTGGCTGAAGGAAGAGTTCCTCCAGCACGAAGTGG 2981 Query 2964 AGGTTCTGATCTCCGAGTTTTAAAAATGGAGGATTTCAGAAACGCACTCGAGCTGGTGAG 3023 | |||||||| |||||| |||||| || |||||||||||||||||||| ||||||||||| Sbjct 2982 AAGTTCTGATATCCGAGCTTTAAACATAGAGGATTTCAGAAACGCACTTGAGCTGGTGAG 3041 Query 3024 TATGAGCATCTCATCAAAGTCTGTCAACATGACAGCGCTTCGACAATGGAACGAAGACTA 3083 ||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||| | || Sbjct 3042 TATGAGCGTCTCATCAGAGTCTGTGAACATGACAGCGCTTCGAAAATGGAACGAACATTA 3101 Query 3084 CGGGGAAGGTGGATCCAG-AA--GGAATGAATCATT 3116 |||||||||||||||||| || |||| ||| |||| Sbjct 3102 CGGGGAAGGTGGATCCAGTAAATGGAACGAA-CATT 3136 Score = 841 bits (455), Expect = 0.0 Identities = 651/739 (88%), Gaps = 39/739 (5%) Strand=Plus/Plus Query 582 GATGTCTAAAGTTACAGTCATATCTGGTGGGGAACAGGTTCCTGCAGGAAAATTTCTACA 641 ||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 558 GATGTCTAAAGTTGCAGTCAAATCTGGTGGGGAACAGGTTCCTGCAGCAAAATTTCTACA 617 Query 642 GTTAGAGAGAGAGGCAAGAGATCCATCAAGAGTTTCGATGTTGGCATCGCTTGAAATCTC 701 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 618 GTTAGAGAGAGAGGCAAGAGATCCATCAACTGTTTCGATTTTGGCATCGCTTGAAATCTC 677 Query 702 GCGTGAGAATCCTGCTACTTCTGGGGTCCAAGAAGGCGTGGAAGGATATTTTCCTGTTAA 761 |||||||||||||||||||||||| |||||||||||| | | || || | || | Sbjct 678 GCGTGAGAATCCTGCTACTTCTGGCGTCCAAGAAGGC---GCA-GA-GCTTGAAT-TTGA 731 Query 762 CAATCAAAGTAATAAAGCTGCAGACAGTGGAGTAGTCATCAGCCACAACCAAGATTCCAA 821 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 732 CAATCAAAGTAATAAAGCTGCAGACAGTGGAGTAGTCAGCAGCCACAACCAAGATTCCAA 791 Query 822 AATGGAGATATTAGATGAGGAAAACGAGGTGACAAGAAACCGGAGGGCACAACAAGCTGC 881 ||| | || || ||||||||||||| || ||||| || |||||||||| Sbjct 792 AAT---G------GA-GA--AAAACGAGGTGAC----AA--GGAGGCCAGAACAAGCTGC 833 Query 882 AAAG-TTCAGGGAATATATTCGAGCTGGTATTGTTGACGGCAAAAGATTGGAATTTTCAT 940 ||| |||||| ||||||||| |||||| |||||||| ||| |||||||| ||||||||| Sbjct 834 -AAGATTCAGGAAATATATTCAAGCTGGAATTGTTGAAGGCGAAAGATTGAAATTTTCAT 892 Query 941 TCGAAAATTTTCCTTATTATTTGAGTGAGCATACAAAGTATGTCTTACTAGCTGTTTCAG 1000 ||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| Sbjct 893 TCGAAAATTTTCCTTATTATTTGAGTGAGAATACAAAGAACGTCTTACTAGCTGTTTCAC 952 Query 1001 ATATGCATCTGAA-TAAGATGAATATAGGATATGCCCCATATGCATCCGACTTGACCATT 1059 |||| |||||||| |||| ||||| ||||||||||| |||||| |||||||| |||| | Sbjct 953 ATATACATCTGAACAAAGA-GAATACAGGATATGCCCTATATGCCTCCGACTTTACCACT 1011 Query 1060 TTGAATCCAAGGATATTGCTTTCTGGTCCTGCAGGGTCTGAAATATACCAAGAGATATTA 1119 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1012 TTGAATCCAAGGATATTGCTTTCTGGTCCTGCAGGAACTGAAATATACCAAGAGATATTA 1071 Query 1120 GCTAAAGCACTTGCCAATT-CATTCAATGCGAAATTGCTAATATTTGACAGCAATCCAAT 1178 ||||||||||||||||| | | ||||| |||||||||||||| |||||| || ||||||| Sbjct 1072 GCTAAAGCACTTGCCAAATAC-TTCAAGGCGAAATTGCTAATTTTTGACGGCCATCCAAT 1130 Query 1179 TTTGGGGGTTATGACTGCTAAAGAATTTGAGTCACTGATGAATGGACCTGC-------G- 1230 ||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1131 TTTGGGGGTTATGACTGCTGAAGAATTTGAGTCACTGATGAATGGACCTGCTTCTAAAGA 1190 Query 1231 -CTCATTGATCGAGGAAAAAGCTTAGATTTGTCATCAGGTCAAGGAGATTCATCTATCCC 1289 |||||||| ||||| |||||||| ||||||||| ||||| |||||| |||||||| ||| Sbjct 1191 GCTCATTGACCGAGGGAAAAGCTTGGATTTGTCAGCAGGTGAAGGAGGTTCATCTAGCCC 1250 Query 1290 TTCTCCTGCTACTTCTCCC 1308 ||||||||||||||||||| Sbjct 1251 TTCTCCTGCTACTTCTCCC 1269 Score = 505 bits (273), Expect = 1e-141 Identities = 471/563 (84%), Gaps = 28/563 (5%) Strand=Plus/Plus Query 1 ATGGTGTCACCGGGACGGAGTGAATCTATCTCCGGCGAGAACAATACAACC-CTTCCCGA 59 ||||||||| || |||||||||||||| ||||||| | |||||||||||| | |||||| Sbjct 1 ATGGTGTCATCGCCACGGAGTGAATCTACCTCCGGCAACAACAATACAACCAC-TCCCGA 59 Query 60 CGGAAGCAGCGGCAAGAGAATTCC-TCCATCGTCTCCTTCCGG-AGACAAATCTCCTTCA 117 |||| |||||||||||||| ||| ||| || ||| ||| ||| ||| |||||||||||| Sbjct 60 TGGAATCAGCGGCAAGAGAACTCCTTCC-TCTTCTTCTT-CGGAAGATAAATCTCCTTCA 117 Query 118 TCTAAACGCTCAAAGTTGGGAGATGGCAGCGGCGCTTCTACCGATAGCAGTGAAGCTCCA 177 || |||||| ||||||||||||||||| |||||||||||| ||| | |||| || ||||| Sbjct 118 TCCAAACGCCCAAAGTTGGGAGATGGCGGCGGCGCTTCTATCGAGAACAGTAAACCTCCA 177 Query 178 ACCTCCGAAGACGCCAAGATTGC--C-GAAGGC-TTAACACCGACT-TT-------G--- 222 ||||||| ||| ||||||||||| | ||| | | |||| || || | Sbjct 178 ACCTCCGGAGAAGCCAAGATTGCGGCGGAA-CCACCACCACCTCCTGTTGCGGAAGGCTC 236 Query 223 ----CCAGATAGTTCTTTTTCGGGATGGACATATCGACACTGTACATTTAAGACCCCATG 278 ||||||||||||||||| ||||||| ||||| |||| ||||||||||||| ||||| Sbjct 237 AACACCAGATAGTTCTTTTTCCGGATGGAAATATCAACACAGTACATTTAAGACTCCATG 296 Query 279 GTGTAAATTGCTATCACAGTCTGCAAAGCAACAAAACCTTTGCCTTTATGA-ATCTTCAT 337 |||| |||||||||| |||||||| |||| | |||| || | ||| | | ||| || | Sbjct 297 GTGTCGATTGCTATCAGAGTCTGCACAGCATCCAAACGTTAACATTTCT-ACATCGTCCT 355 Query 338 GCACTTTTGGTTCTTGTTTAACCTCCGACTTCACATTACATGACCGGAATCTCGGTGCAT 397 |||| ||||||||||| |||||||| || |||||||| | || |||||||| ||||||| Sbjct 356 TCACTATTGGTTCTTGTCTAACCTCCAACCTCACATTAAAAGATCGGAATCTTGGTGCAT 415 Query 398 TTTTGTGCAAGATCACAAGAATTCAGCGCAATGGCAATGTTGTAGCGGTTCTAGATATCA 457 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TATTGTGCAAGATCACAAGAATTCAGCGCAATGGCAATGTTGTAGCGGTTCTAGATATCA 475 Query 458 CAGGAACCGGGGGACCTCTGCGGATAAATAAAGCATTTGTCATCAAGAATGTCAGCCATG 517 ||||||||||||||||| ||||||||||| |||| ||| || ||||||||||||||||| Sbjct 476 CAGGAACCGGGGGACCTGTGCGGATAAATGGAGCACTTGCCAACAAGAATGTCAGCCATG 535 Query 518 AGCTACACTCTGGTGACGAATTG 540 ||||||||||||||||||||| Sbjct 536 TCCTACACTCTGGTGACGAATTG 558 > Ahg329179 jgi|Araly1|329179|fgenesh1_pm.C_scaffold_7001406 Length=3420 Score = 1216 bits (658), Expect = 0.0 Identities = 1148/1369 (84%), Gaps = 96/1369 (7%) Strand=Plus/Plus Query 1830 TCTAACGGATCTCTTTGTGAATAAAGTTACTATAT-ACATGCCACAGGGTGAGGAACTTC 1888 |||| |||| ||||||| |||||||||| |||| | | |||||||||| ||||||||||| Sbjct 2058 TCTAGCGGAGCTCTTTGAGAATAAAGTTCCTAT-TCAAATGCCACAGGATGAGGAACTTC 2116 Query 1889 TTAAATCT-TGGAAGTATCATTTGGATCGTGATGCTGAGACTTT-GAAAATGAAGGCTAA 1946 ||| || | |||||| |||| |||||||||||||||||| ||| |||| |||||||||| Sbjct 2117 TTACAT-TGTGGAAGCATCAAATGGATCGTGATGCTGAGA-TTTCGAAAGTGAAGGCTAA 2174 Query 1947 TTACAATCACTTGCGCATGGTGTTGGGACGATGTGGTATAGAG-TGTGAAGGCATTGAGA 2005 || || ||||||||||||||||||||||| ||||||| | | | |||||||| ||||||| Sbjct 2175 TTTCAGTCACTTGCGCATGGTGTTGGGACTATGTGGTCT-GGGATGTGAAGGAATTGAGA 2233 Query 2006 CGCTGTGCATGAAGGATCTCACACTTCGAAGAGACAGTGCAGAAAAGATCATTGGATGGG 2065 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 2234 CGCTGTGCATGAAGGATCTCACACTTCAAAGCGACAGTGCAGAAAAGATCATTGGATGGG 2293 Query 2066 CTCTTAGTCACCATATAAAGTC--TAATCCTGGTGCTGATCCAGATGTTAGGGTTATTTT 2123 || ||||| ||||||| ||| | |||||||| | ||||||| | | || ||||||||| Sbjct 2294 CTTTTAGTAACCATAT-AAG-CAATAATCCTGATACTGATCC--A-GCTAAGGTTATTTT 2348 Query 2124 GTCTCTTGAGAGCTTAAAATGTGGAATAGAACTCTT-----G-G-----AAA---T-T-- 2166 ||||| ||||||| || ||| |||||||| |||||| | | ||| | | Sbjct 2349 GTCTCGTGAGAGCATAGAATTTGGAATAGGACTCTTACAGGGTGATCTTAAAGGTTCTAC 2408 Query 2167 GA-ATCTAAGAAGTCTCTCAAGGACATTGTGACAGAAAAT-ACGTTTG-A-A-A------ 2215 || || |||| |||||||||||||||||||||||||||| | ||||| | | | Sbjct 2409 GAGCTCAAAGAGGTCTCTCAAGGACATTGTGACAGAAAATGA-GTTTGAAGAGAGGCTTC 2467 Query 2216 TAAGTGATATTATTCCGCCCAGTGAAATTGGTGTTACATTCGATGACATTGGGGCACTTG 2275 |||||||| | |||| ||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct 2468 TAAGTGATGTAATTCTGCCCAGTGACATTGATGTTACATTTGATGACATTGGGGCACTTG 2527 Query 2276 AGAATGTCAAAGACACTTTAAAGGAACTGGTTATGCTTCCTTTTCAATGGCCTGAACTTT 2335 |||| |||||||| || |||||||||||||||||||| ||||| ||| |||||||||||| Sbjct 2528 AGAAAGTCAAAGATACCTTAAAGGAACTGGTTATGCTCCCTTTACAACGGCCTGAACTTT 2587 Query 2336 TCTGCAAGGGGCAATTAACAAAGCCTTGTAACGGAATTCTCTTATTTGGACCTTCTGGAA 2395 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | Sbjct 2588 TCTGCAAGGGGCAATTAACAAAGCCTTGTAAAGGAATTCTCTTATTTGGACCTCCTGGTA 2647 Query 2396 CTGGAAAGACCATGCTTGCAAAGGCAGTGGCAACGGAAGCTGGTGCTAACCTCATCAACA 2455 |||||||||||||||||||||| |||||||||| |||||||| ||| ||| ||||||||| Sbjct 2648 CTGGAAAGACCATGCTTGCAAAAGCAGTGGCAAAGGAAGCTGATGCGAACTTCATCAACA 2707 Query 2456 TGTCAATGTCAAG------------GTGGTTTAGTGAGGGTGAGAAATATGTCAAAGCTG 2503 | ||||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 2708 TCTCAATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTG 2767 Query 2504 TCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTTGGACGAGGTGGAAAGCA 2563 ||||||| ||||| |||||||| ||||| || |||||||| ||||||||||||| |||| Sbjct 2768 TCTTTTCTTTGGCCAGTAAAATGTCCCCTTGCGTTATCTTTGTGGACGAGGTGGACAGCA 2827 Query 2564 TGCTA---C---------A---TC-GGTAC----AGGC-T---GAAGACGAAAAATGAGT 2599 ||||| | | | || || |||| | ||||| ||||||||||| Sbjct 2828 TGCTAGGCCGAAGAGAAAACCGACAGGGACATGAAGGCATGCGGAAGATGAAAAATGAGT 2887 Query 2600 TCATAATAAATTGGGACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAG 2659 |||| || ||||||||||||| | ||| || |||| ||||||||||||||||||||||| Sbjct 2888 TCATGATGCATTGGGACGGTCTAACGACTAAGGAAATGGAACGTGTTCTGGTTCTTGCAG 2947 Query 2660 CCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCA-TAGGTTG 2718 |||||||| | |||||||||||||| ||||||||||||||| ||||||| || ||||||| Sbjct 2948 CCACAAATCGGCCTTTTGACCTTGATGAGGCTGTCATTAGACGGTTGCC-CAGTAGGTTG 3006 Query 2719 ATGGTGGGACTACCAGATGC-TCGTAGTAGATCAAAGATATTGAAGGTGATACTTTCAAA 2777 |||||||||||||||||| | || | |||| || | ||||| ||||| |||||| |||| Sbjct 3007 ATGGTGGGACTACCAGATACATCAAA-TAGAGCATATATATTAAAGGTTATACTTGCAAA 3065 Query 2778 AGAAGACTTGTCCCCTGATTTCGATATTGATGAGG-TTGCTAGTATGACAAATGGATATT 2836 |||| || ||||||||| ||| || ||| || || ||||||||||||| |||||||||| Sbjct 3066 AGAAAACGTGTCCCCTGGTTTGGACATTAATT-GGATTGCTAGTATGACTAATGGATATT 3124 Query 2837 CTGGAAACGATCTTAAGAATCTATGTGTTACTGCTGCCCGCCGTCGAATCATAG-AGATA 2895 |||||| ||||||||||||||||||||||||||||||| ||||| ||||| || || | Sbjct 3125 CTGGAAGTGATCTTAAGAATCTATGTGTTACTGCTGCCCACCGTCCAATCA-AGGAGCT- 3182 Query 2896 GT-GGAGAAGGAAAAAAGTGAGCGAGATGCTGCTGTGGCTGAAGGCAGAGTTCCTCCAGC 2954 || ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| Sbjct 3183 GTTGGAGAAGGAAAAAAGAGAGCGAGATGCTGCTCTGGCTGAAGGCAAAGTTCCTCCAGC 3242 Query 2955 TGGAAGTGGAGGTTCTGATCTCCGAGTTTTAAAAATGGAGGATTTCAGAAACGCAC-TCG 3013 | ||| ||| ||||||||||||||| |||||| ||||||||||||||| |||||| | | Sbjct 3243 TCTAAGAGGAAGTTCTGATCTCCGAGCTTTAAACATGGAGGATTTCAGATACGCACAT-G 3301 Query 3014 AGCTGGTGAGTATGAGCATCTCATCAAAGTCTGTC-AACATGACAGCGCTTCGACAATGG 3072 ||| |||| || |||| ||| || | |||||| | ||||||||| |||||| ||||||| Sbjct 3302 AGCGGGTGTGTGCGAGCGTCTTATTAGAGTCTG-CGAACATGACAACGCTTCAACAATGG 3360 Query 3073 AACGAAGACTACGGGGAAGGTGGATCCAGAAGGAATG-AATCATTCAGC 3120 |||||| ||||||||||||||||||||||| | | | ||||||||||| Sbjct 3361 AACGAACTCTACGGGGAAGGTGGATCCAGAAAGCA-GCAATCATTCAGC 3408 Score = 433 bits (234), Expect = 5e-120 Identities = 353/410 (86%), Gaps = 10/410 (2%) Strand=Plus/Plus Query 1425 GGGACCACCTTATGGGTTTATAGGGAAAGTACTGTTAGTATTTGATGAGAATCCTTCAGC 1484 |||||| ||| | ||| ||| |||||||||| | |||||||||||||||||||||||||| Sbjct 1611 GGGACCTCCTAAAGGGATTACAGGGAAAGTAATTTTAGTATTTGATGAGAATCCTTCAGC 1670 Query 1485 TAAAGTGGGTGTTAGATTTGAGAATCCAGTACCTGATGGAGTTGATCTTGGTCAACTGTG 1544 ||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||| Sbjct 1671 TAAAGTGGGTGTTAGATTTGATAAGCCAATACCTGATGGAGTTGATCTTGGTGAACTGTG 1730 Query 1545 TGAAATGGGACATGGGTTCTTCTGCAGTGCTACTGATCTTCAGTTCGAAAGCTCG-GCAT 1603 ||||| ||||||||||||||||||| ||||||||||| ||||| |||||||| | | Sbjct 1731 TGAAACAGGACATGGGTTCTTCTGCAAAGCTACTGATCTGAAGTTCAAAAGCTCGAGT-T 1789 Query 1604 CTGACGATCTAAATGAATTACTTGTTACCAAATTGTTTGAGGTTGCCCATGA-TCAGAGC 1662 |||| |||||| | |||||||||||| || |||||||||||||| |||| | | ||||| Sbjct 1790 CTGAGGATCTAGCTAAATTACTTGTTAACACATTGTTTGAGGTTGTCCAT-ACTGAGAGC 1848 Query 1663 AGAACTTGTCCGGTTA-TTATATTTTTGAAAGATGCTGAGAAATATTTTGTTGGAAATTC 1721 |||||| ||||| ||| || |||||||||||||||||||||||| | ||||||||||||| Sbjct 1849 AGAACTCGTCCG-TTAATTCTATTTTTGAAAGATGCTGAGAAATCTGTTGTTGGAAATTC 1907 Query 1722 CCATTTTTGCTCTGCATTCAAAAGCAAACTTGAAGTTATCTC--AGATAACCTAATTGTG 1779 | |||| | |||||| ||| ||| || ||||||| | ||||| ||| ||| |||||||| Sbjct 1908 CGATTTGTACTCTGCGTTCCAAATCAGACTTGAA-T-ATCTCCCAGACAACGTAATTGTG 1965 Query 1780 ATCTGTTCCCAGACACATTCTGATAATCCCAAGGAGAAGGGTATTGGACG 1829 ||| |||| |||||||| |||||| ||| || |||||||| ||||||||| Sbjct 1966 ATCGGTTCACAGACACACTCTGATCATCTCATGGAGAAGGATATTGGACG 2015 Score = 248 bits (134), Expect = 2e-64 Identities = 340/431 (79%), Gaps = 47/431 (11%) Strand=Plus/Plus Query 790 GGAGTAGTCA-TCAGCCACAACCAAGATTCCAAAATGGAGATATTAGATGAGGAA-AACG 847 |||| ||||| | | |||||||||||||||||||||| ||||||||||||| ||| |||| Sbjct 847 GGAGCAGTCAGT-ACCCACAACCAAGATTCCAAAATGCAGATATTAGATGA-GAAGAACG 904 Query 848 AGGTGACAAG-AA---AC--CGGAG-GGC-ACA--A--CAA--G-CTGCAA-----AGT- 886 |||||||||| || || | || | ||| | ||| | |||||| | | Sbjct 905 AGGTGACAAGTAATTCACAAC-AAGCTTCAACATCAGGCAATGGTCTGCAATCTGCAATA 963 Query 887 -TCAGGGAATATATTCGAGCTGGTATTGTTGACGGC-AAAAGATTGGAATTTTCATTCGA 944 |||| ||| |||| ||||||||||||||| ||| |||| |||||| ||||| || | Sbjct 964 GTCAGAGAAGGCATTCAAGCTGGTATTGTTGAAGGCGAAAA-CTTGGAAGTTTCAATC-A 1021 Query 945 AAA-TTTTCCTTATTATTTGAGTGAGCATACAAAGTATGTCTTACTAGC-TGTTTCAGAT 1002 ||| |||||| |||||||||||||| |||||||| | |||| || | || |||| | Sbjct 1022 AAACTTTTCCCTATTATTTGAGTGAATATACAAAGGCTACCTTAATA-CATGCTTCATTT 1080 Query 1003 ATGCATCTGAATAAGATGAATATAGGATATGCCCCA-TATG-CATCCGACTTGA-CCATT 1059 || |||||| |||| || | || ||||| |||| | || | |||||| ||| ||| | Sbjct 1081 ATACATCTG---AAGA--AA-AAAGAATATG-CCCACTTTGTC-TCCGACATGACCCA-T 1131 Query 1060 TTGAATCCAAGGATATTGCTTTCTGGTCCTGCAGGGTCTGAAATATACCAAGAGATATTA 1119 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1132 CTGAATCCAAGGATATTGCTTTCTGGTCCCGCAGGGTCTGAAATATACCAAGAGACGTTA 1191 Query 1120 GCTAAAGCACTTGCCAATT-CATTCAATGCGAAATTGCTAATATTTGACAGCAATCCAAT 1178 |||||||||||||||||| | | | |||||||||||||||||||||||| || |||| Sbjct 1192 GCTAAAGCACTTGCCAATGACCTGGAC-GCGAAATTGCTAATATTTGACAGCCATTCAAT 1250 Query 1179 TTTGGGGGTTA 1189 ||||||| ||| Sbjct 1251 TTTGGGGTTTA 1261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 119260557095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5