BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62170.2
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475127 jgi|Araly1|475127|fgenesh2_kg.2__257__AT1G62170.1 883 0.0
Ahg480348 jgi|Araly1|480348|fgenesh2_kg.3__3049__AT2G14540.1 582 2e-165
Ahg907008 jgi|Araly1|907008|Al_scaffold_0002_89 287 2e-76
> Ahg475127 jgi|Araly1|475127|fgenesh2_kg.2__257__AT1G62170.1
Length=1296
Score = 883 bits (478), Expect = 0.0
Identities = 648/727 (89%), Gaps = 23/727 (3%)
Strand=Plus/Plus
Query 721 GCCGAAGAAGTGCGTACGGAGGTGAATGCGTGGGCATCAAGTCACACAAATGGTCTCATC 780
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GCCGAAGAAGTGCTTATGGAGGTGAATGCGTGGGCATCAAGTCACACAAATGGTCTCATC 642
Query 781 AAAGATCTTCTTCCTCGTGGATCAGTTACAAGCCTAACCGACAGGGTTTATGGAAGCGCA 840
||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||
Sbjct 643 AAAGATCTTCTTCCTCGTGGATCAGTTACAAGCCTAACCAACCGGATTTATGGAAGCACA 702
Query 841 TTGTACTTCAAAGGAACCTGGGAGGAAAAATACTCA-AAGTCAATGACGAAATGCAAACC 899
||||||||||||||| ||||| | || ||| | || ||||||||||||| | ||||||
Sbjct 703 TTGTACTTCAAAGGAGCCTGGCAAGACGAATTC-CACAAGTCAATGACGAGACACAAACC 761
Query 900 TTTTTACCTTCTCAATGGAACATCAGTGTCTGTGCCATTCATGAGTAGCTTTGAGAAAC- 958
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 762 TTTTTACCTTCTCAATGGAACATCAGTGTCTGTGCCATTCATGAGTAGCTCTGA-AGACC 820
Query 959 AATACATTGCGGCTTATGATGGTTTTAAGGTACTCAGACTTCCTTATCGACAAGGCCGTG 1018
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 821 AATACATTGAGGCTTATGATGGTTTCAAGGTACTCAGGCTTCCTTATCGACAAGGCCGTG 880
Query 1019 ACAATACCAACCGCAACTT-TGCAATGTATATCTATCTCCCGGACAAGAAAGGTG-AATT 1076
|| |||||||||||||||| | |||||||| |||||||||| ||||||||||| | ||||
Sbjct 881 ACGATACCAACCGCAACTTCT-CAATGTATTTCTATCTCCCTGACAAGAAAGG-GCAATT 938
Query 1077 GGATGATCTTTTGGAAAGAATGACATCTACTCCTGGATTCTTGGATAGTCACAATCCAGA 1136
|||| | || |||| ||||||||||||||| ||||||||||||||||||| | ||| ||
Sbjct 939 GGATAAACTGTTGGGGAGAATGACATCTACTTCTGGATTCTTGGATAGTCATATTCCGGA 998
Query 1137 A-AGAAGAGTTAAAGTTGGTAAATTCAGAATTCCAAAGTTTAAGATCGAATTCGGGTTTG 1195
| | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 999 AGACAA-AGTTAAAGTTGGTAAATTCAGAATTCCAAAGTTTAAGATCGAATTTGGGTTTG 1057
Query 1196 AAGCTTCAAGTGCTTTCAGTGACTTTGAGCTTGATGTGTCATTTTACCAAAAAACTTTGA 1255
|||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1058 AAGCTTCAAGTGTTTTCAGTGACTTTGAGCTTGATGTGTCATTGTACCAAAAAGCTTTGA 1117
Query 1256 TTGAAATCGATGAAAAAGGTACCGAAGCTGTTACTTTTA-CTGCATTTCGTTCTGCATAC 1314
|||| ||||||||| ||||||| ||||||| | || | | | || ||| |||| | || |
Sbjct 1118 TTGAGATCGATGAAGAAGGTACTGAAGCTGCTGCTGT-AGCAGCTTTT-GTTC-G-ATGC 1173
Query 1315 CTTGGTTGC-GCTTTGGTGAAGCCTATT-GATTTTGTAGCAGATCATCCATTTCTTTTCT 1372
|| ||| | |||| ||||| | ||| |||||||||||||||||||| ||| ||||||
Sbjct 1174 AAAGGCTGCCGTTTTG-TGAAGAC-ATTAGATTTTGTAGCAGATCATCCGTTTGTTTTCT 1231
Query 1373 TGATTAGAGAAGAAC-AAACCGGAACTGTTTTGTTCGCTGGTCAAATC-TTCGATCCTTC 1430
||||||||||| ||| ||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 1232 TGATTAGAGAA-AACCAAACCGGAACTGTTTTGTTCGCTGGCCAAATCCTT-GATCCTTC 1289
Query 1431 TGCTTAG 1437
|| ||||
Sbjct 1290 TGTTTAG 1296
Score = 734 bits (397), Expect = 0.0
Identities = 530/592 (90%), Gaps = 17/592 (3%)
Strand=Plus/Plus
Query 37 atggagccaaaagagaagaaa-caaaagCTTGACACATCAG-AA--GTCGCAAGTCCCTC 92
|||||||| || ||||| ||| ||||||||||||||||||| || |||||||||||||
Sbjct 1 ATGGAGCCCAAGGAGAA-AAAGCAAAAGCTTGACACATCAGAAATCATCGCAAGTCCCTC 59
Query 93 TCTCTCAAAGACGCATCTaaagaagaagaaaacgaagaagcaaaaaatcagaaaatcaca 152
|||||||||||||||||| | |||||| || |||||||||||||||||||||||||||
Sbjct 60 TCTCTCAAAGACGCATCT--A-AAGAAG--AA-GAAGAAGCAAAAAATCAGAAAATCACA 113
Query 153 agaaatcacaagTCCCTCTCTGTCAAAGAATACAGATTTGGTAATCGCAAGTCCTTCTCT 212
|| |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 114 AGTAATCACAAGTTCCTCTCTGTCAAAGAATAAAGATTTGGTAATCAAAAGTCCTTCTCT 173
Query 213 ATCAAATATTGATGTGGGAGAAGCAATGAAGAAGCAAAACGATGTCGCTATATTCCTTAC 272
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 174 AGCAAATATTGATGTGGGAAAAGCAATGAAGAAGCAAAACGATCTCGCTATATTCCTTAC 233
Query 273 GGGGATAGTAATCTCTTCCGTAGCCAAAAACT-CTAATTTTGTCTTCTCTCCTGCATCAA 331
|||| |||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 234 GGGGCTAGTAATCTCTTCCGTAGCCAATAA-TACTAATTTTGTCTTCTCTCCTGCATCAA 292
Query 332 TCAACGCCGCACTCACCATGGTTGCTGCTAGTTCCGGTGGTGAACAAGGTGA-AGAACTA 390
||||| ||| ||||||||||||||||||||| ||| ||| |||| || || | |||||||
Sbjct 293 TCAACACCGTACTCACCATGGTTGCTGCTAGCTCCAGTGATGAAGAAAGT-AGAGAACTA 351
Query 391 AGATCCTTCATCCTCTCCTTCCTCAAGTCATCCTCAACTGATGAACTTAACGCAATTTTC 450
|||||||||||||| |||||||| ||||| |||||||| ||||||||||||||| ||||
Sbjct 352 AGATCCTTCATCCTATCCTTCCTTAAGTCTTCCTCAACCGATGAACTTAACGCAGTTTTT 411
Query 451 CGCGAAATCGCTTCCGTCGTTCTTGTTGACGGAAGCAAAAAAGGCGGCCCCAAAATCGCG 510
|||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 412 AGCGAAATCTCTTCCACCGTCCTTGTTGATGGAAGCAAAAAAGGCGGCCCCAAAATCGCG 471
Query 511 GTGGTTAATGGAATGTGGATGGATCAGTCGCTATCTGTCAATCCCTTGTCGAAAGATCTC 570
||||||||||| | |||||||| | || |||| | | || |||| |||||||||||||
Sbjct 472 GTGGTTAATGGTGTTTGGATGGAGAAATCTCTATTTATTAACCCCTCGTCGAAAGATCTC 531
Query 571 TTTAAGAATTTCTTCA-GTGCTGCTTTCGCTCAAGTTGATTTCAGATCCAAG 621
|||||||| ||||||| | |||||||||||||||||||||||||||||||||
Sbjct 532 TTTAAGAAGTTCTTCAAG-GCTGCTTTCGCTCAAGTTGATTTCAGATCCAAG 582
> Ahg480348 jgi|Araly1|480348|fgenesh2_kg.3__3049__AT2G14540.1
Length=1288
Score = 582 bits (315), Expect = 2e-165
Identities = 582/707 (82%), Gaps = 33/707 (5%)
Strand=Plus/Plus
Query 745 AATGCGTGGGCATCAAGTCACACAAATGGTCTCATCAAAGATCTTCTTCCTCGTGGATCA 804
||| ||||||| ||| ||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 496 AATACGTGGGCTTCACGTCACACCAATGACCTCATCAAAGATCTTCTTCCTTATGGATCT 555
Query 805 GTTACAAGCCTAACCGACAGGGTTTATGGAAGCGCATTGTACTTCAAAGGAACCTGGGAG 864
|||||||||||||| | || | ||||||| ||||||||||||||| ||| | |||||
Sbjct 556 GTTACAAGCCTAACTAATTGGATATATGGAAACGCATTGTACTTCAAGGGAGCTTGGGA- 614
Query 865 GAAA--AATACTCA-AAGTCAATGACGAAATG-CAAACCTTTTTACCTTCTCAATGGA-A 919
||| ||| | | ||||| ||||| ||| | ||||| ||| ||||||||||| || |
Sbjct 615 -AAAGGAAT-TTGATAAGTCCATGAC-AAAAGAGAAACCATTTCACCTTCTCAAT-GACA 670
Query 920 CATCAGTGTCTGTGCCATTCATGAGTAGCTTTGAGAAACAATACATTGCGGCTTATGATG 979
|||||| |||||||| |||||||| |||| ||| |||| ||| | |||||||||||
Sbjct 671 AATCAGTCTCTGTGCCTTTCATGAGAAGCTACAAGAGGCAATTCATAGAGGCTTATGATG 730
Query 980 GTTTTAAGGTACTC-AGACTTCCTTATCGACAAGGCCGTGACAATACCAACCGCAACTTT 1038
|||| || || ||| || ||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 731 GTTTCAAAGTCCTCAAG-CTTCCTTATCGACAAAGCCGTGATGATACCAACCGCAAGTTT 789
Query 1039 GCAATGTATATCTATCTCCCGGACAAGAAAGGTGAATTGGATGATCTTTTGGAAAGAATG 1098
| |||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 790 TCCATGTATCTCTATCTCCCTGACAAGAAAGGTGAATTGGATAATCTTTTGGAGAGAATG 849
Query 1099 ACATCTACTCCTGGATTCTTGGATAGTCACAATCCAGAAAGAA-GAGTTAAAGTTGGTAA 1157
||||||||||||||||||||||||||||| | ||| |||| | ||||| | |||||| |
Sbjct 850 ACATCTACTCCTGGATTCTTGGATAGTCATATTCC-GAAATACCGAGTTGATGTTGGTGA 908
Query 1158 ATTCAGAATTCCAAAGTTTAAGATCGAATTCGGGTTTGAAGCTTCAAGTGCTTTCAGTGA 1217
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||| | |||
Sbjct 909 TTTCAGAATTCCAAAATTTAAGATCGAATTCGGTTTTGAAGCTTCAAGTGTTTTTAATGA 968
Query 1218 C-T-TT-GAGCTTGATGTGTCATTTTACCAAAAAACTTTGATTGAAATCGATGAAAAAGG 1274
| | || |||||| | |||||||| || || ||| |||||||||| || |||||| ||||
Sbjct 969 CGTCTTTGAGCTTAAAGTGTCATTATATCAGAAAGCTTTGATTGAGATTGATGAAGAAGG 1028
Query 1275 TACCGAAGCTGTTACTTTTACTGCATTT--CGTTCTGCATA-CCTTG--G-T-TGCGCTT 1327
||| ||||||| || |||||| ||| ||| || || || | | | |||| ||
Sbjct 1029 TACTGAAGCTGCGGCTGCTACTGCTTTTGTCGTG-TGTTTAACCG-GCAGCTGTGCG-TT 1085
Query 1328 TG-GT-GAAGCCTATTGATTTTGTAGCAGATCATCCATTTCT-TTTCTTGATTAGAGAAG 1384
|| | | || || |||||||| ||||| ||||||||||| ||| |||||||||||||
Sbjct 1086 TGAGCCGGAGAAGATAGATTTTGTGGCAGAACATCCATTTCTCTTT-TTGATTAGAGAAG 1144
Query 1385 AACAAA-CCGGAACTGTTTTGTTCGCTGGTCAAATCTTCGATCCTTC 1430
| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 A-CAAAACCGGAACTGTTTTGTTCGCTGGTCAAATCTTCGATCCTTC 1190
> Ahg907008 jgi|Araly1|907008|Al_scaffold_0002_89
Length=495
Score = 287 bits (155), Expect = 2e-76
Identities = 192/210 (91%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 153 agaaatcacaagTCCCTCTCTGTCAAAGAATACAGATTTGGTAATCGCAAGTCCTTCTCT 212
||||| | ||||||||||||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 270 AGAAACCGCAAGTCCCTCTCTGTCAAAGAATACGGATTTGGTAATCACAAGTCCCTCTCT 329
Query 213 ATCAAATATTGATGTGGGAGAAGCAATGAAGAAGCAAAACGATGTCGCTATATTCCTTAC 272
||| |||||||||||||||||||| ||||||||||| |||||||| ||||| |||||| |
Sbjct 330 ATCGAATATTGATGTGGGAGAAGCGATGAAGAAGCAGAACGATGTGGCTATGTTCCTTGC 389
Query 273 GGGGATAGTAATCTCT-TCCGTAGCCAAAAACTCTAATTTTGTCTTCTCTCCTGCATCAA 331
|| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GGAGAAAGTAATCTCTGT-TGTAGCCAAAAACTCTAATTTTGTCTTCTCTCCTGCATCAA 448
Query 332 TCAACGCCGCACTCACCATGGTTGCTGCTA 361
|||||||| ||||||||||||||||||||
Sbjct 449 TCAACGCCTTACTCACCATGGTTGCTGCTA 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64829596990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5