BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62190.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907223 jgi|Araly1|907223|Al_scaffold_0002_304 1105 0.0
Ahg492093 jgi|Araly1|492093|fgenesh2_kg.7__1526__AT4G27030.1 693 0.0
Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1 551 4e-156
> Ahg907223 jgi|Araly1|907223|Al_scaffold_0002_304
Length=867
Score = 1105 bits (598), Expect = 0.0
Identities = 764/845 (90%), Gaps = 7/845 (1%)
Strand=Plus/Plus
Query 26 ACCCTCTAAGACCCATCACCAACATCCCAAGAAGCTATGGTCCAACGCGTGTACGTGTCA 85
||||||||||||| ||||||||||||||||||||| | ||||| | |||||||| |||
Sbjct 5 ACCCTCTAAGACCTATCACCAACATCCCAAGAAGCCACGGTCCGTCAAGTGTACGTATCA 64
Query 86 CATGCTCTGTTACTACCACCAATCCTCAGCTTAATCATGAGAA--C-CTTGTAGTTGAGA 142
|||||||||||||||||||||||||||| | |||||||||||| | ||||| |||||
Sbjct 65 CATGCTCTGTTACTACCACCAATCCTCATCCTAATCATGAGAAGGCGCTTGTCCTTGAGC 124
Query 143 AACGCCTTGTGAATCCTCCTCTT-TCCAAGAACAACGACCCGACTCTGCAATCGACATGG 201
||||||||||||||| |||| || |||||| |||||||||| ||||||||||||||||||
Sbjct 125 AACGCCTTGTGAATCATCCT-TTGTCCAAGGACAACGACCCAACTCTGCAATCGACATGG 183
Query 202 ACTCATCGGTTATGGGTTGCAGCGGGAAGTACAACCATATTTGCCTCTTTCGCTAAATCT 261
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 184 ACTCATCGGTTATGGGTTGCAGCGGGAAGCACAACTGTCTTTGCCTCTTTCGCTAAATCT 243
Query 262 ATCATTGGAGGGTTTGGTTCTCATCTTTGGCTCCAACCAGCTTTAGCGTGTTATGCAGGG 321
||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||
Sbjct 244 TTCATTGGAGGGTTTGGTTCCCATCTCTGGCTCGAACCAGCTTTAGCCAGTTATGCAGGG 303
Query 322 TACGTGTTTGCTGATCTAGGCTCCGGTGTTTACCACTGGGCCATTGATAACTATGGTGGT 381
||||| || |||||||||||||| ||||| ||||||||||||||||| ||||| |||| |
Sbjct 304 TACGTCTTAGCTGATCTAGGCTCAGGTGTGTACCACTGGGCCATTGACAACTACGGTGAT 363
Query 382 GCATCAACACCTATAGTTGGAGCCCAACTTGAAGCGTCTCAGGGTCATCACAAGTATCCC 441
|||||||||| |||| ||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 364 AAATCAACACCTTTAGTAGGAGCACAACTCGAAGCGTCTCAGGGTCATCACAAGTGGCCT 423
Query 442 TGGACAATCACAAAACGTCAATTCGCCAACAATTCATACACTATCGCTCGAGCCATAACT 501
||||||||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 424 TGGACAATCACCAAGCGTCAATTCGCCAACAACTCACACACTATAGCTCGAGCCATAACT 483
Query 502 TTTATAGTTCTACCACTAAACCTTGCAATTAACAATCCTCTGTTTCATAGCTTTGTGAGC 561
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 484 TTTACAGTTCTACCACTAAACCTTGTAATTAACAATCCTCTGTTTCATAGCTTTGTGAGT 543
Query 562 ACATTTGCATTTTGCATTTTGTTAAGCCAACAATTCCATGCTTGGGCTCATGGAACCAAG 621
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 544 ATATTTGCATTTTGCATATTGTTAAGCCAACAATTCCATGCTTGGGCTCATGGAACCACG 603
Query 622 AGCAAGCTTCCACCTCTCGTGATGGCGTTGCAGGACATGGGACTGCTTGTCTCACGGAAA 681
||||||||||| ||||||||| ||||||| ||||| |||||||| || || |||||||||
Sbjct 604 AGCAAGCTTCCGCCTCTCGTGGTGGCGTTACAGGATATGGGACTACTCGTTTCACGGAAA 663
Query 682 GATCACCCGGGACATCACCAAGCACCGTATAACAGCAACTACTGTGTAGTGAGTGGGGCA 741
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 664 CATCACTTGGGACATCACCAAGCACCATATAACAGCAACTACTGTGTAGTGAGTGGGGCA 723
Query 742 TGGAACAAAGTTTTGGACGAAAGTAACTTATTT-AAGGCATTGGAGATGGCGTTGTTTTT 800
|||||||| |||||||| |||||||| || ||| ||| |||||||||||||||||| |||
Sbjct 724 TGGAACAAGGTTTTGGATGAAAGTAAGTTCTTTGAAG-CATTGGAGATGGCGTTGTATTT 782
Query 801 CCAGTTCGGTGTGAGACCAAACTCGTGGAACGAGCCAAACTCTGACTGGACAGAAGAAAC 860
|||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 783 CCAGTTTGGTGTGAGACCAAGGTCATGGAACGAGCCAAACTCTGACTGGGCAGAAGAAAC 842
Query 861 CGAGA 865
|||||
Sbjct 843 CGAGA 847
> Ahg492093 jgi|Araly1|492093|fgenesh2_kg.7__1526__AT4G27030.1
Length=1122
Score = 693 bits (375), Expect = 0.0
Identities = 642/770 (83%), Gaps = 22/770 (3%)
Strand=Plus/Plus
Query 104 CCAATCCTCAGCTTAATCATGAGAACCTTGTAGTTGAGAAACGCCTTGTGAATCCTCCTC 163
|||| |||| || ||| | |||||| ||||| |||||| ||||||||| || ||||||||
Sbjct 219 CCAAGCCTCGGCCTAACCGTGAGAAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTC 278
Query 164 TTTCCAAGAACAACGACCCGACTCTGCAATCGACATGGACTCATCGGTTATGGGTTGCAG 223
| | | ||| ||||| ||| || ||||||||||||| |||||||||||||||||||
Sbjct 279 TGT-C-----CAATGACCCAACTTTGAAATCGACATGGACCCATCGGTTATGGGTTGCAG 332
Query 224 CGGGAAGTACAACCATATTTGCCTCTTTCGCTAAATCTATCATTGGAGGGTTTGGTTCTC 283
| || | || || | |||| |||||| ||||||||| ||||||||||||||| |||||
Sbjct 333 CAGGCTGCACCACTTTGTTTGTCTCTTTAGCTAAATCTGTCATTGGAGGGTTTGATTCTC 392
Query 284 ATCTTTGGCTCCAACCAGCTTTAG-CGTGTTATGCAGGGTACGTGTTTGCTGATCTAGGC 342
|||| |||||| |||||||||||| || |||||||||||||| | || |||||||||||
Sbjct 393 ATCTCTGGCTCGAACCAGCTTTAGCCG-GTTATGCAGGGTACATCTTAGCTGATCTAGGT 451
Query 343 TCCGGTGTTTACCACTGGGCCATTGATAACTATGGTGGTGCA-TCAACACCTA-TAGTTG 400
|| ||||| ||||||||||||||||||||||| |||| || | |||||||| | |||| |
Sbjct 452 TCTGGTGTCTACCACTGGGCCATTGATAACTACGGTGATG-AGTCAACACC-AGTAGTAG 509
Query 401 GAGCCCAACTTGAAGCGTCTCAGGGTCATCACAAGTATCCCTGGACAATCACAAAACGTC 460
|| ||||| | ||||| | ||||||||| ||||||| || ||||||||||| | ||| |
Sbjct 510 GAACCCAAATCGAAGCATTTCAGGGTCACCACAAGTGGCCTTGGACAATCACCAGACGGC 569
Query 461 AATTCGCCAACAATTCATACA--CTATCGCTCGAGCCATAACTTTTA-TAGTTCTACCAC 517
|||| |||||||| || |||| || | |||| || |||||| |||| | ||||| ||||
Sbjct 570 AATTTGCCAACAA-TC-TACACGCTCTGGCTCAAGTCATAACCTTTACT-GTTCTCCCAC 626
Query 518 TAAACCTTGCAATTAACAATCCTCTGTTTCATAGCTTTGTGAGCACATTTGCATTTTGCA 577
|| |||||||| ||||| | ||| | ||||| |||||||| ||||||||||||||||||
Sbjct 627 TAGACCTTGCATTTAACGACCCTGTCTTTCACGGCTTTGTGTGCACATTTGCATTTTGCA 686
Query 578 TTTTGTTAAGCCAACAATTCCATGCTTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTC 637
| |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 687 TAATGTTTAGCCAGCAATTCCATGCTTGGGCACATGGAACCAAGAGCAAGCTTCCACCTC 746
Query 638 TCGTGATGGCGTTGCAGGACATGGGACTGCTTGTCTCACGGAAAGATCACCCGGGACATC 697
||||| ||||||||||||||||||| ||||||| ||||||| | | ||| | | |||||
Sbjct 747 TCGTGGTGGCGTTGCAGGACATGGGGTTGCTTGTTTCACGGAGACAGCACGCAGAACATC 806
Query 698 ACCAAGCACCGTATAACAGCAACTACTGTGTAGTGAGTGGGGCATGGAACAAAGTTTTGG 757
| | |||||| ||||||| ||| ||||| | |||||||||||||||||||| |||||||
Sbjct 807 ATCGAGCACCATATAACAACAATTACTGCATCGTGAGTGGGGCATGGAACAATGTTTTGG 866
Query 758 ACGAAAGTAACTTATTTAAGGCATTGGAGATGGCGTTGTT-TTTCCAG-TTCGGTGTGAG 815
| || ||||| | ||| ||||||||||||||| ||| || ||||||| || || |||||
Sbjct 867 ATGAGAGTAAGGTCTTTGAGGCATTGGAGATGGTGTT-TTATTTCCAGCTTGGG-GTGAG 924
Query 816 ACCAAACTCGTGGAACGAGCCAAACTCTGACTGGACAGAAGAAACCGAGA 865
||| | || |||| || |||||||||||||||||||||||||||||||
Sbjct 925 ACCTAGGTCATGGAGTGAACCAAACTCTGACTGGACAGAAGAAACCGAGA 974
> Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1
Length=897
Score = 551 bits (298), Expect = 4e-156
Identities = 683/865 (79%), Gaps = 42/865 (5%)
Strand=Plus/Plus
Query 14 TTCAAACCAAGAACCCTCTAAGACCCATCAC---CAACATCCCAAGAAGCTATGGTCCAA 70
||||||| ||| || ||||||| || ||||| |||||||||||||||| | ||||
Sbjct 19 TTCAAACAAAGTACACTCTAAGTCCAATCACAAACAACATCCCAAGAAGCCACCGTCCGT 78
Query 71 CGCGTGTACGTGTCACATGCTCTGTTACTACCACCAATC-CTCAGCTTAATCATGAGAAC 129
||| | | |||||||| | || | |||||||| | |||||| ||| ||||||||
Sbjct 79 CGCTTCTCCGTGTCAC--G-TC-----C-ACCACCAA-CTCTCAGCCTAACCATGAGAAG 128
Query 130 CTTGTAGTTGAGAAACGCCTTGTGAATCCTCCTCTTTCCAAGAACAACGACCCGACTCTG 189
||||| ||||| |||| ||||||||||||||||| | | ||||||| | |||||
Sbjct 129 CTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCT-C-----CAACGACACAACTCTA 182
Query 190 CAATCGACATGGACTCATCGGTTATGGGTTGCAGCGGGAAGTACAACCATATTTGCCTCT 249
||||| ||||||||||| ||||||||||||||||| || | || ||| | |||| ||||
Sbjct 183 CAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTCTTTGTCTCT 242
Query 250 TTCGCTAAATCTATCATTGGAGGGTTTGGTTCTCATCTTTGGCTCCAACCAGCTTTAG-C 308
|| || ||||| |||||||||| ||||||||||||||| |||||| ||||| |||||| |
Sbjct 243 TTTGCCAAATCGATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAACCAACTTTAGCC 302
Query 309 GTGTTATGCAGGGTACGTGTTTGCTGATCTAGGCTCCGGTGTTTACCACTGGGCCATTGA 368
| ||| ||| |||||| | || || |||||||| || ||||| ||||||||||||| ||
Sbjct 303 G-GTTTTGCCGGGTACTTCTTAGCAGATCTAGGTTCTGGTGTCTACCACTGGGCCACCGA 361
Query 369 TAACTATGGTGGTGCA-TCAACACCTATAGT-TGGAGCCCA-ACTTGAAGCGTCTCAGGG 425
|||||| |||| || | ||||| ||| |||| ||| |||| | | |||| ||||| |
Sbjct 362 TAACTACGGTGATG-AGTCAACGCCTCTAGTAGGGA-CCCATA-TCGAAGATTCTCAAGA 418
Query 426 TCATCACAAGTATCCCTGGACAATCACAAAACGTCAATTCGCCAACAATTCATACA--CT 483
||| ||||||| || |||||||| || ||| ||||| || ||||| || |||| |
Sbjct 419 TCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAA-TC-TACATTTT 476
Query 484 ATCGCTCGAGCCATAACTTTTATAGTTCTACCACTAAACCTTGCAATTAACAATCC-TCT 542
|| |||| || || |||||| |||||||| |||||| |||||||| || | | || | |
Sbjct 477 ATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGA-CCATGT 535
Query 543 GTTTCATAGCTTTGTGAGCACATTTGCATTTTGCATTTTGTTAAGCCAACAATTCCATGC 602
||||||| ||||||| |||| ||||||||| || | ||||| | || | |||||| |
Sbjct 536 GTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTCCATAC 595
Query 603 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTCGTGATGGCGTTGCAGGACAT-GG 661
|||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||| ||
Sbjct 596 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGACATTGG 655
Query 662 GACTGCTTGTCTCACGGAAAGATCACCCGGGA--CATCACCAAGCACCGTATAACAGCAA 719
| |||||||| ||||||| | |||| | || ||||||| |||||||||||| | |||
Sbjct 656 G-CTGCTTGTTTCACGGATACATCAT--GTGAATCATCACCGAGCACCGTATAATAACAA 712
Query 720 CTACTGTGTAGTGAGTGGGGCATGGAACAAAGTTTTGGACGAAAGTAACTTATTTAAGGC 779
||||| ||||||||||||| |||||||| |||||||| ||||| || | ||| ||||
Sbjct 713 TTACTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGC 772
Query 780 ATTGGAGATGGCGTTGTTTTTCCAGTTCGGTGTGAGACCAAACTCGTGGAACGAGCCAAA 839
| ||||||||| ||||| |||| || | || |||||||| | || |||| ||| ||||
Sbjct 773 AATGGAGATGGTGTTGTATTTCAAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAA 832
Query 840 CTC-TGACTGGACAGAAGAAACCGA 863
||| | | |||| |||||||||||
Sbjct 833 CTCCTAA-TGGATGGAAGAAACCGA 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5