BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62200.1
Length=1909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475124 jgi|Araly1|475124|fgenesh2_kg.2__254__AT1G62200.1 2643 0.0
Ahg484127 jgi|Araly1|484127|fgenesh2_kg.5__119__AT2G02040.1 704 0.0
Ahg935936 jgi|Araly1|935936|scaffold_500127.1 361 1e-98
> Ahg475124 jgi|Araly1|475124|fgenesh2_kg.2__254__AT1G62200.1
Length=1839
Score = 2643 bits (1431), Expect = 0.0
Identities = 1713/1845 (93%), Gaps = 35/1845 (2%)
Strand=Plus/Plus
Query 30 TGAATTCGAATGAAGAAGACGAAAGGAGAAT--T-CTTGACGTTGAAGAATCTCTTCTTA 86
||||||| ||| ||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 2 TGAATTCCAAT---GAAGACGAAAGGATAATAATCCTTGACGTTGAAGAATCTCTTCTTA 58
Query 87 CACAGGAGGAAGTGAACAATCACTTGACCGGATTGTCTTCTACAGCTGAAGATGGTTCTA 146
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 59 CACAGGAGGAAGTGAACAATGTCTTGACCGGATTGTCTTCTTCAGCTGAAGATGGTTCTG 118
Query 147 TTGACATTTATGGAAACCCACCATCGAAGAAGAAGACAGGAAACTGGAAAGCTTGTCCCT 206
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 119 TTGACATTTATGGAAACCCACCATCGAAGAAGAAAACTGGAAATTGGAAAGCTTGTCCCT 178
Query 207 TTATTCTTGGAAACGAATGTTGTGAGAGATTAGCTTACTATGGAATTGCCAAGAATCTAA 266
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 TTATTCTTGGAAACGAATGTTGTGAGAGACTAGCTTACTATGGAATTGCCAAGAATCTAA 238
Query 267 TCACTTACTACACAAGTGAATTACACGAGTCCAATGTTTCTGCAGCTAGTGACGTTATGA 326
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 239 TCACTTATTACACAAGTGAATTACACGAGTCCAATGTTTCTGCAGCTAGCGACGTCATGA 298
Query 327 TTTGGCAAGGAACTTGCTATATCACACCTCTCATTGGAGCTGTTATAGCTGATTCTTACT 386
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 TTTGGCAAGGAACTTGCTATATCACACCTCTAATTGGAGCTGTTATAGCTGATTCTTACT 358
Query 387 GGGGAAGATACTGGACCATTGCTTCTTTCTCTGCTATTTATTTCATTGGAATGGCTTTGT 446
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 359 GGGGAAGATACTGGACTATTGCTTCTTTCTCTGCTATTTATTTCTTTGGAATGGCTTTGT 418
Query 447 TGACACTCTCGGCTTCACTTCCGGTTTTAAAGCCAGCGGCATGTGCTGGCGTTGCTGCGG 506
||||||||||||||||| |||||| |||||||||||||| ||||| |||| ||| |||||
Sbjct 419 TGACACTCTCGGCTTCAGTTCCGGGTTTAAAGCCAGCGGAATGTGTTGGCTTTGTTGCGG 478
Query 507 CTCTATGCTCACCAGCAACAACGGTTCAGTATGCGGTTTTCTTTACAGGGCTTTACCTTA 566
||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 479 TTCTATGCCCACCAGCAACAACGGTTCAGTATGCGGTTTTCTTTTCAGGACTTTACCTTA 538
Query 567 TTGCTCTTGGTACTGGAGGTATCAAACCATGTGTATCATCTTTTGGTGCTGATCAGTTTG 626
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 TTGCACTTGGTACTGGAGGTATCAAACCATGTGTTTCATCTTTTGGTGCTGATCAGTTTG 598
Query 627 ATGATACTGACCCGAGGGAACGAGTTAGAAAAGCTTCTTTCTTTAACTGGTTTTACTTCT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGATACTGACCCGAGGGAACGAGTTAGAAAAGCTTCTTTCTTTAACTGGTTTTACTTCT 658
Query 687 CCATCAACATTGGTTCATTTATCTCATCCACTTTGTTAGTTTGGGTTCAAGAAAATGTCG 746
| |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct 659 CTATCAACATTGGTTCATTTGTCTCATCCACTTTGCTAGTTTGGGTTCAAGAGAATGTCG 718
Query 747 GGTGGGGACTCGGTTTCTTGATTCCCACCGTGTTTATGGGAGTCTCTATTGCGAGTTTCT 806
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 719 GGTGGGGACTCGGTTTCTTGATTCCCACCGTGTTTATGGGAGCCTCTATCGCGAGTTTCT 778
Query 807 TCATTGGAACTCCGCTTTATCGGTTTCAGAAACCGGGAGGTAGTCCGATTACTAGAGTTT 866
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 779 TCATTGGAACTCCGCTTTATAGGTTTCAGAAACCGGGAGGTAGCCCGATTACTAGAGTTT 838
Query 867 GCCAAGTTCTTGTAGCTGCATACCGTAAATTGAAGCTTAATCTCCCTGAAGATATCTCAT 926
||||||||||||||||||||||||| |||| | | || ||||||||||| ||||||||||
Sbjct 839 GCCAAGTTCTTGTAGCTGCATACCGCAAATGGTATCTCAATCTCCCTGAGGATATCTCAT 898
Query 927 TTCTGTATGAAACACGAGAGAAAAACTCCATGATTGCTGGAAGCAGGAAGATTCAACACA 986
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 899 TTCTGTATGAAACACAAGAGAAAAGCTCCATAATTGCTGGAAGCAGGAAGATTCAGCACA 958
Query 987 CTGACGGTTACAAG----T-T-T--C---TT---G-------ACAAAGCTGCTGTTATCT 1025
||| |||||||||| | | | | || | |||||||||| |||||||
Sbjct 959 CTGGCGGTTACAAGAAAATATCTGTCCCCTTTCAGTGTCTTGACAAAGCTGCCGTTATCT 1018
Query 1026 CAGAATATGAATCTAAATCCGGTGCTTTTTCCAACCCATGGAAGCTATGTACTGTAACTC 1085
||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1019 CAGAAGATGAATCGAAATCCGGTGCCTTTTCCAACCCATGGAAGCTATGTACCGTAACTC 1078
Query 1086 AAGTCGAAGAAGTTAAGACTCTAATCCGTATGTTTCCAATCTGGGCCTCGGGGATCGTCT 1145
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1079 AAGTCGAAGAAGTTAAGATTCTGATCCGTATGTTTCCAATCTGGGCCTCGGGGATCATCT 1138
Query 1146 ACTCGGTCCTATATTCACAGATTTCCACTCTATTCGTGCAACAAGGACGGTCCATGAACC 1205
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1139 ACTCGGTCCTATATTCACAGATTTCCACTCTATTTGTGCAACAAGGACGGGCCATGAACC 1198
Query 1206 GAATAATCCGT-TCTTTCGAGATCCCTCCTGCTTCATTCGGGGTTTTCGACACACTTATC 1264
| ||||||| | ||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1199 GGATAATCC-TCTCTTTTGAGATCCCTCCCGCTTCATTTGGGGTTTTCGACACACTTATC 1257
Query 1265 GTGCTCATATCCATCCCAATATATGACCGTTTCCTCGTACCCTTTGTAAGACGGTTCACA 1324
|||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 1258 GTGCTCATATCCATCCCAATCTATGACCGTTTCATCGTACCCTTTGTGAGACGGTTCACA 1317
Query 1325 GGGATACCAAAAGGGTTAACTGATCTGCAGCGAATGGGCATTGGTCTTTTTCTCTCTGTC 1384
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1318 GGTATACCAAAAGGGTTAACTGATCTGCAGCGAATGGGCATTGGTCTTTTTATCTGTGTC 1377
Query 1385 CTAAGCATTGCAGCTGCAGCTATTGTTGAGACAGTGCGGTTGCAGCTTGCTCAAGACTTT 1444
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1378 CTAAGCATTGCAGCTGCAGCTATTGTTGAGACAGTGCGGTTGCAGCTCATTCAAGACACT 1437
Query 1445 GTTGCAATGAGCATATTTTGGCA-GATCCCTCAGTACATACTAATGGGAATAGCAGAGGT 1503
|| ||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||
Sbjct 1438 ATTTCAATGAGCATATTTTGGCAAG-TCCCTCAGTATATACTAATGGGAATTGCAGAGGT 1496
Query 1504 CTTTTTCTTCATTGGTCGAGTTGAGTTTTTCTATGATGAATCTCCTGATGCAATGAGAAG 1563
||| |||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1497 CTTCTTCTTCGTTGGCCGAGTCGAGTTTTTCTATGACCAATCTCCTGATGCAATGAGAAG 1556
Query 1564 TGTATGCAGCGCTTTGGCACTACTCAATACCGCAGTCGGAAGCTACCTGAGCTCGTTGAT 1623
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TGTCTGCAGCGCTTTGGCACTACTCAATACCGCAGTCGGAAGCTACCTGAGCTCGTTGAT 1616
Query 1624 CCTCACTCTTGTGGCGTATTTCAC-AGCTCTTGGAGGTAAAGATGGTTGGGTTCCAGACG 1682
||||||||||||||||||||| || | | |||||||||||||||||||| |||||||||
Sbjct 1617 CCTCACTCTTGTGGCGTATTTGACGA-CAATTGGAGGTAAAGATGGTTGGATTCCAGACG 1675
Query 1683 ACCTTAATAAAGGACATCTTGACTACTTCTTCTGGCTTTTGGTCTCTCTTGGACTTGTCA 1742
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1676 ACCTTAATAAAGGACATCTTGACTACTTCTTCTGGCTTTTGGTCTCTCTTGGACTTATCA 1735
Query 1743 ACATTCCTGTTTATGCCTTGATT-TGTGTTAAGCACACAAAGAAGAAGGCTTTGTAAGCT 1801
|||||||||| |||||||| || | |||||||||||| |||||||||||||| ||||||
Sbjct 1736 ACATTCCTGTCTATGCCTTC-TTCTCTGTTAAGCACACGAAGAAGAAGGCTTTATAAGCT 1794
Query 1802 ATTTTTGTAACAAGCTATGTTGTTTTGGTTCATCATATTCATGGT 1846
| ||||||||||||||||| |||||||||||||||| |||| |||
Sbjct 1795 ACTTTTGTAACAAGCTATGCTGTTTTGGTTCATCATGTTCAGGGT 1839
> Ahg484127 jgi|Araly1|484127|fgenesh2_kg.5__119__AT2G02040.1
Length=1977
Score = 704 bits (381), Expect = 0.0
Identities = 1010/1308 (77%), Gaps = 65/1308 (5%)
Strand=Plus/Plus
Query 131 GCTGAAGATGGTTCTA-TTGACATTT-ATGGAAACCCACCATCGAAGAAGAAGACAGGAA 188
|||||||||||||| | | ||| ||| ||||||||||||||| |||| |||| |||||||
Sbjct 191 GCTGAAGATGGTTC-AGTGGAC-TTTAATGGAAACCCACCATTGAAGGAGAAAACAGGAA 248
Query 189 ACTGGAAAGCTTGTCCCTTTATTCTTGGAAACGAATGTTGTGAGAGATTAGCTTACTATG 248
|||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||
Sbjct 249 ACTGGAAAGCTTGTCCTTTTATTCTTGGTAATGAATGTTGTGAGAGGCTAGCTTACTATG 308
Query 249 GAATTGCCAAGAATCTAATCACTTA-CTACACAAGTGAA-TTACA-CGAGTCCAATGTTT 305
| ||||| |||||| |||||||| || ||| | | || |||| | || ||||| |
Sbjct 309 GTATTGCTGGGAATCTTATCACTTACCT-CACCACT-AAGCTACATCAAG-GAAATGTGT 365
Query 306 CTGCAGCTAGTGACGTTA-TGATTTGGCAAGGAACTTGCTATATCACACCTCTCATTGGA 364
|||| |||| | |||| | | |||||||| ||||| ||| | || ||||| ||||||
Sbjct 366 CTGCTGCTACAAATGTTACT-ACATGGCAAGGGACTTGTTATCTTACTCCTCTTATTGGA 424
Query 365 GCTGTTATAGCTGATTCTTACTGGGGAAGATACTGGACCATTGCTTCTTTCTCTGCTATT 424
|||||| | || ||| ||||||||||| |||||||||| ||||||| |||||| | |||
Sbjct 425 GCTGTTTTGGCCGATGCTTACTGGGGACGATACTGGACTATTGCTTGTTTCTCCGGGATT 484
Query 425 TATTTCATTGGAATGGCTTTGTTGACACTCTCGGCTTCACTTCCGGTTTTAAAGCCAGCG 484
|||||||| || ||| | ||| || || || || ||| |||||| || |||||||||
Sbjct 485 TATTTCATCGGGATGTCGGCGTTAACTCTTTCAGCCTCAGTTCCGGCATTGAAGCCAGCG 544
Query 485 GCATGTGCTGGCGTTGCTGCGGCTCTATGCT-CACCAGCAACAACGGTTCAGTATGCGGT 543
| | || | ||| |||| | | || | || ||||||| | | ||| |||||| |
Sbjct 545 G-A-ATG-T---ATTG--GCGG-TTTTTG-TCCATCAGCAACGCCAGCTCAATATGCGAT 594
Query 544 TTTCTTT-ACAGGGCTTTACCTTATTGCTCTTGGTACTGGAGGTATCAAACCATGTGTAT 602
|||||| | ||||||||||| || || ||||| |||||||||||||||||||| || |
Sbjct 595 GTTCTTTGGC-GGGCTTTACCTGATCGCCCTTGGCACTGGAGGTATCAAACCATGCGTCT 653
Query 603 CATCTTTTGGTGCTGATCAGTTTGATGATACTGACCCGAGGGAACGAGTTAGAAAAGCTT 662
|||| |||||||| |||||||||||||| || ||| || | |||||||||||||||||||
Sbjct 654 CATCCTTTGGTGCAGATCAGTTTGATGACACGGACTCGCGTGAACGAGTTAGAAAAGCTT 713
Query 663 CTTTCTTTAACTGGTTTTACTTCTCCATCAACATTGGTTCATTTATCTCATCCACT-TTG 721
| ||||||||||||||||||||||||||||| ||||| || || | ||||| | | ||
Sbjct 714 CGTTCTTTAACTGGTTTTACTTCTCCATCAATATTGGAGCACTTGTGTCATCTAGTCTTC 773
Query 722 TTAGTTTGGGTTCAAGAAAAT-GTCGGGTGGGGACTCGGTTTCTTG-ATTCCCACCGTGT 779
| ||||||| ||||||| ||| | ||||||||| | || || | | || || |||||||
Sbjct 774 T-AGTTTGGATTCAAGAGAATCG-CGGGTGGGGTTTAGGATT-TGGGATACCAACCGTGT 830
Query 780 TTATGGGAGTCT-CTATTGCGAGTTTCTTCATTGGAACTCCGCTTTATC-GGTTTCAGAA 837
| |||||| | | | ||||| ||||||||| |||| || |||||||| | ||||||||||
Sbjct 831 TCATGGGACT-TGCCATTGCAAGTTTCTTCTTTGGCACACCGCTTTA-CAGGTTTCAGAA 888
Query 838 ACCGGGAGGTAGTCCGATTACTAG-AGTTTGCCAAGTTCTTG-TAGCTGCATACCGTAAA 895
||| ||||| || ||||| ||| | | ||| |||||| | || | ||| ||| ||| |||
Sbjct 889 ACCTGGAGGAAGCCCGATAACTCGGA-TTTCCCAAGT-CGTGGTTGCTTCATTCCGGAAA 946
Query 896 TTGAAGCT-T-AATCTCCCTGAAGATATCTCATTTCTGTATGAAACACGAGAGAAAAACT 953
| | || | || ||||||||||| | | ||||||||||||||| ||| || ||||
Sbjct 947 TC-AT-CTGTCAAACTCCCTGAAGACCCCACGCTTCTGTATGAAACACAAGACAAGAACT 1004
Query 954 C--CATGATTGCTGGAAGCAGGAAGATTCAAC-ACACTGACGGTTACAAGTTTCTTGACA 1010
| | | ||||||||||| || || || | | | || || | || ||||| ||||||||
Sbjct 1005 CTGC-T-ATTGCTGGAAGTAGAAAAAT-CGAGTATACCGATGATTGCAAGTATCTTGACA 1061
Query 1011 AAGCTGCTGTTATCTCAGAATATGAATCTAAATCCGGTGCTTTTTCCAACCCATGGA-AG 1069
|||| ||||||||||||||| | ||||| |||||||| | || ||||||| | |||| |
Sbjct 1062 AAGCCGCTGTTATCTCAGAAGAAGAATCGAAATCCGGAGATTATTCCAACTCGTGGAGA- 1120
Query 1070 CTATGTACTGTAACTCAAGTCGAAGAAGTTAAGACTCTAATCCGTATGTTTCCAATCTGG 1129
||||| || || || |||||||||||| | |||| ||| || || ||||| |||||||||
Sbjct 1121 CTATGCACGGTTACGCAAGTCGAAGAACTCAAGATTCTGATTCGAATGTTCCCAATCTGG 1180
Query 1130 GCCTCGGGGATCGTCTACTCGG-TCCTATATTCACAGATTTCCACTCTATTCGTGCAACA 1188
|| || || || | | ||| | | |||| |||| || ||||| | || || |||||
Sbjct 1181 GCTTCCGGTATAATTTTCTCAGCTG-TATACGCACAAATGTCCACAATGTTTGTTCAACA 1239
Query 1189 AGGACG-GTCCATGAACCG-AATAATCCGTTCTTTCGAGATCCCTCCTGCTTCATTCGGG 1246
||| || | |||||||| | || |||| | || ||| || | ||||| || || | |||
Sbjct 1240 AGGCCGAG-CCATGAACTGCAA-AATCGGATCGTTCCAGCTTCCTCCAGCAGCACTAGGG 1297
Query 1247 GTTTTCGACACA-CTTATCGTGC-TCATATCCATCCCAATATATGACCGTTTCCTCGTAC 1304
|||||||| || | ||| | |||| | |||| | || ||||| ||| || | |
Sbjct 1298 ACATTCGACACTGCT-AGCGT-CATCATCTGGGTCCCGCTCTACGACCGGTTCATCATTC 1355
Query 1305 CCTTTGTAAGACGGTTCACAGG-G-ATACCAAAAGGGTTAACTGATCTGCAGCGAATGGG 1362
|||| | ||||||||||||||| | | || ||| || || || || | || |||||||
Sbjct 1356 CCTTAGCAAGACGGTTCACAGGAGTAGAC-AAA-GGATTCACGGAGATACAAAGAATGGG 1413
Query 1363 CATTGGTCTTTTTCTCTCTGTCCTAAGCATTGCAGCTGCAGCTATTGT 1410
|| ||||||||| ||||||| || | || ||||||||||| |||||
Sbjct 1414 AATCGGTCTTTTTGTCTCTGTTCTCTGTATGGCAGCTGCAGCCATTGT 1461
> Ahg935936 jgi|Araly1|935936|scaffold_500127.1
Length=1778
Score = 361 bits (195), Expect = 1e-98
Identities = 588/769 (76%), Gaps = 61/769 (8%)
Strand=Plus/Plus
Query 1064 TGGAAGCTATGTACTGTAACTCAAGTCGAAGAAGTTAAGACTCTAATCCGTATGTTTCCA 1123
|||||||| ||||| || |||||||||||||||||||||| ||| | ||| |||| ||
Sbjct 913 TGGAAGCTCTGTACCGTGACTCAAGTCGAAGAAGTTAAGATTCTGTTACGTTTGTTCCCC 972
Query 1124 ATCTGGGCCTCGGGGATCGTCTACTCGGTCCTATATTCACAGATTTCCACTCTATTCGTG 1183
|| ||||||||||| ||| ||| ||| || || | |||||||||| ||| || || ||
Sbjct 973 ATTTGGGCCTCGGGCATCATCTTCTCAGTTCTCCACTCACAGATTTACACGCTCTTTGTT 1032
Query 1184 CAACAAGGACGGTCCATGAACCGAATAATCCGTTCTTTCGAGATCCCTCCTGCTTCAT-T 1242
|||||||||||||||||||| |||| ||| | || ||||| |||||||| ||| | | |
Sbjct 1033 CAACAAGGACGGTCCATGAAACGAACCATCGGCTCATTCGAAATCCCTCCAGCTAC-TCT 1091
Query 1243 CGGGGTTTTCGACAC-ACTTA-TCGTGCTCATATCCATCCCAATATATGACCGTTTCCTC 1300
|||| | |||||||| | | | || |||||||| ||||||| |||||||| || ||
Sbjct 1092 CGGGATGTTCGACACTGC-AAGT-GTTCTCATATCTGTCCCAATCTATGACCGCATCATC 1149
Query 1301 GTACCCTTTGTAAGACGGTTCACAGGGATACCAAAAGGGTTAACTGATCTGCAGCGAATG 1360
|| |||||||| |||||||||||||| || | ||||| || |||||||| || ||||||
Sbjct 1150 GTTCCCTTTGTGAGACGGTTCACAGGCTTAGCGAAAGGATTCACTGATCTACAACGAATG 1209
Query 1361 GGCATTGGTCTTTTTCTCTCTGTCCTAAGCATTG-CAGCTGCAGCTATTGTTGAGACAGT 1419
|| ||||| || ||| ||||||| | ||| ||| || ||||||||| |||||||| ||
Sbjct 1210 GGGATTGGACTCTTTGTCTCTGTTTTGAGC-TTGACATTTGCAGCTATCGTTGAGACGGT 1268
Query 1420 GCGGTTGCAGCTT-GCTCAAGA-C-T--T-T-GTTGCAA-T---G--A--G---CA-T-- 1458
||||| ||| || || | ||| | | | | || | || | | | | || |
Sbjct 1269 TCGGTTACAG-TTAGCCCGAGATCTTGATCTAGTGGAAAGTGGAGACACTGTTCCATTAA 1327
Query 1459 --A--TTTTGGCAGATCCCTCAGTACATACTAATGGG-AATAGC-AGAGGTCTTT-TTCT 1511
| |||||||| |||||||||||| | | ||||| | | || || || ||| ||||
Sbjct 1328 CCATCTTTTGGCAAATCCCTCAGTACTTTTTTATGGGCACT-GCTGGA-GT-TTTCTTCT 1384
Query 1512 TCATTGGTC-GAGTTGAGTTTTTCTATGATG-AATCTCCTGATGCAATGAGAAG-TGTAT 1568
|| |||||| || | |||||||||||||| | | ||||| ||| |||||||||| | | |
Sbjct 1385 TCGTTGGTCGGA-TCGAGTTTTTCTATGA-GCAGTCTCCAGATTCAATGAGAAGCT-TGT 1441
Query 1569 GCAGCGCTTTGGCACTACTCAATACCGCAGTCGGAAGCTACCTGAGCTCGTTGATCCTCA 1628
| || |||| ||| || |||| |||| || | |||| |||| |||||||||||||| | |
Sbjct 1442 GTAGTGCTTGGGCTCTTCTCACTACCACACTAGGAAACTACTTGAGCTCGTTGATCATTA 1501
Query 1629 CTCTTGTGGCGTATTTCACAGCTCTTGGAGGTAAAGATGGTTGGGT--TCCAGACGACCT 1686
| |||||||||||||| || | ||||||||| ||||| | | ||||| || |
Sbjct 1502 CCCTTGTGGCGTATTT--GAG--C-----GGTAAAGATTGTTGGATCCTTCAGACAACAT 1552
Query 1687 TAATAAAGGACATCTTGACTACTTCTTCTGGCTTTTGGTCTCTCTTGGACT-TGTCAACA 1745
||| || |||||||||||||||||||||||||||||||||| ||||||| | ||| ||||
Sbjct 1553 TAACAATGGACATCTTGACTACTTCTTCTGGCTTTTGGTCTGTCTTGGA-TGTGTTAACA 1611
Query 1746 TTCCTGTTTATGCCTTGATT-TGTGTTAAGCACACAAAGAAGAAGGCTT 1793
| || |||| || ||| || | ||| || |||| | ||||||||||
Sbjct 1612 TACCCGTTTTTGTCTTC-TTCTCTGTCAAATACACTCACAAGAAGGCTT 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71723931335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5