BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G62210.1

Length=860
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907221 jgi|Araly1|907221|Al_scaffold_0002_302                     520    9e-147


> Ahg907221 jgi|Araly1|907221|Al_scaffold_0002_302
Length=405

 Score =  520 bits (281),  Expect = 9e-147
 Identities = 352/386 (91%), Gaps = 6/386 (2%)
 Strand=Plus/Plus

Query  246  CCACAAATGGCACCAAAGCTCCTCTTAGTGGTGGCATTAGAGGAGTTGCTCCGTCTCATG  305
            |||| ||||||||||||||||||||||||||||||||  |||||||| ||||||||| ||
Sbjct  20   CCACTAATGGCACCAAAGCTCCTCTTAGTGGTGGCATCGGAGGAGTTTCTCCGTCTCCTG  79

Query  306  TAACAGAAGGCGGATCCACTAATGGCACTAAAACTCCTGTTATTGGTGTCATTGTAGGAG  365
            ||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct  80   TAACAAAAGGCGGAGCCACTAATGGCACCAAAACTCCTCTTATTGGTGTCATTGTAGGAG  139

Query  366  TTTCTCCCATCAAAGAAAGTGGAGCCACTATTGGCACCAAAGCTCCTCTTAATGG---CG  422
            |||||||||||  |||||||||||||||||||||||||||||||||||||| |||   ||
Sbjct  140  TTTCTCCCATCCCAGAAAGTGGAGCCACTATTGGCACCAAAGCTCCTCTTACTGGTGGCG  199

Query  423  TTTTAAGACCAGCTCCTCTACGTGAAGGTGAAGCAACTCTTGCCACTAACAACACTGGAA  482
            |||||||| ||| ||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct  200  TTTTAAGAGCAGTTCCTCTACGTGAAGGCGGAGCAAATCTTGCCACTAACAACACTGGAA  259

Query  483  AACCTAGTGTTTCCGTTATGGGAGTCGGTACCAACGTACAAAGCGAAGTTCTTTTTACTA  542
              ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct  260  CTCCTAGTGTTTCCGTTATGGGAGTCGGTACTACCGTACAAAGCGAAGTTCTTTATACTA  319

Query  543  CTAAAAACTTTGAAACGAGATTTGTCATCAATGCAAAGGTGAGTGAAGATGGTAGCAACG  602
            ||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct  320  CTAAACAGTTTGAAACGAGATTTGTCATTAATGCGAAGGTGAGTGAAGATGGTAGCAATG  379

Query  603  GTGGGAGT---GGTGCAAAGCCTTGA  625
            |||||||    |||||||||||||||
Sbjct  380  GTGGGAGGAAAGGTGCAAAGCCTTGA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31832635695


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5