BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62220.1 Length=649 Score E Sequences producing significant alignments: (Bits) Value Ahg931385 jgi|Araly1|931385|scaffold_303842.1 488 2e-137 Ahg924807 jgi|Araly1|924807|scaffold_200368.1 433 9e-121 Ahg315187 jgi|Araly1|315187|fgenesh1_pm.C_scaffold_2000220 412 1e-114 > Ahg931385 jgi|Araly1|931385|scaffold_303842.1 Length=486 Score = 488 bits (264), Expect = 2e-137 Identities = 397/459 (86%), Gaps = 17/459 (4%) Strand=Plus/Plus Query 37 AAGATAAA-AACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGC 95 |||| ||| || || |||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1 AAGA-AAAGAAAAAACAAAAGATGAATGCCACAAAGTGTGTTGTGCTTCTCGTGATTGGC 59 Query 96 GTTTTG-TGTGCCATTGTCACCGCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATT 154 | |||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||| Sbjct 60 G-TTTGTTGTGCCATTGTCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATT 118 Query 155 AGGCACCTCTCTTCCAAAAAGTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGG 214 |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||| Sbjct 119 AGGCACCTCTCTTCCAAAAACTACTACCAAAGGCGTTGGAGCTCAGCTTTTTGCTTATGG 178 Query 215 TATTACTTCCAGCAGTAGTGATGTCTATAGCTCTGCTACTGGTTTCAACAATCCCAAAGG 274 ||||| ||||| |||||||||||||||| ||||| || ||| || ||||||||||| Sbjct 179 CGCTACTTACAGCACCAGTGATGTCTATAGCTTTGCTAATGCTTTTAAAAATCCCAAAGG 238 Query 275 TCCAG--ACGCTAATGCATACGAAAATGGCTACACAAGTACCAGCGGACAAGTC-ATTGC 331 ||||| | || |||||||||||||||||||||||| |||||| |||| |||| || || Sbjct 239 TCCAGGGA-GC-AATGCATACGAAAATGGCTACACAGGTACCAACGGAGTAGTCTAT-GC 295 Query 332 CAAGGGTCGCAAGGCAAGAGTTTCTTCTGCAAGT-GCTTCTACCGCTAAAGGTGATGCTA 390 |||||||| ||||||||||||||||||||||||| | ||||| ||||| || ||||| Sbjct 296 CAAGGGTCACAAGGCAAGAGTTTCTTCTGCAAGTCG-TTCTAAAGCTAACGGCAATGCTG 354 Query 391 AAGCTGCAGTGACTCGCAAAGCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGG-CA 449 |||||||| |||||| |||||||||||||||||| ||||| ||| |||| || | | Sbjct 355 AAGCTGCAATGACTCACAAAGCTGCTGCTGCACGTGCAAAAGGTTTGGTAAAATCCGAC- 413 Query 450 TCAAGGGTGAAGGG---TTCCTCTGagaagaagaagggc 485 |||||||||||||| |||||||| ||||||||||||| Sbjct 414 TCAAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGGC 452 > Ahg924807 jgi|Araly1|924807|scaffold_200368.1 Length=706 Score = 433 bits (234), Expect = 9e-121 Identities = 385/456 (84%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 42 AAAAACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGCGTTTTG 101 ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 10 AAAAA-AATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTG 68 Query 102 TGTGCCATTGTCACCGCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATTAGGCACC 161 ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| Sbjct 69 TGTGCCATTGTCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACC 128 Query 162 TCTCTTCCAAAAAGTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTATTACT 221 ||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||| Sbjct 129 TCTCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGGCACAACT 188 Query 222 TCCAGCAG-TAGTGATGTCTATAGCTCTGCTACTGGTT-TCAACAATCCCAAAGGTCCAG 279 | ||||| | | | |||| ||||| ||||| | || | || |||||||||||||| Sbjct 189 TACAGCAACTCTT-ACGTCTCTAGCTATGCTAGAGCTTCT-AATGGTCCCAAAGGTCCAG 246 Query 280 ACGCTAATGCATACGAAAATGGCTACA-CA-AGTACCAGCGGACAAGTC-ATTGCCAAGG 336 |||| ||||| |||| |||||| || || | ||||| ||||||||| || ||||||| Sbjct 247 ACGCCGATGCAGCCGAATATGGCT-CAACATA-TACCAATGGACAAGTCTAT-GCCAAGG 303 Query 337 GTCGCAAGGCAAG-AGTTTCTTCTGCAAGTGCTTCTACCGCTAAAGGTGATGCTAAAGCT 395 |||||||||||| | |||||||| ||||| ||||| |||| ||| || ||| ||||| Sbjct 304 GTCGCAAGGCAAACA-TTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCT 362 Query 396 GCAGTGACTCGCAAAGCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGG-CATCAAG 454 |||| || ||| ||||||||||||||||| ||||| ||| |||| || | | ||||| Sbjct 363 GCAGCGAATCGAAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCGAC-TCAAG 421 Query 455 GGTGAAGGG---TTCCTCTGagaagaagaagggcaa 487 ||||||||| |||||||| ||||||||||| ||| Sbjct 422 GGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGTCAA 457 > Ahg315187 jgi|Araly1|315187|fgenesh1_pm.C_scaffold_2000220 Length=444 Score = 412 bits (223), Expect = 1e-114 Identities = 370/439 (84%), Gaps = 17/439 (4%) Strand=Plus/Plus Query 57 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGCGTTTTGTGTGCCATTGTCACC 116 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTGTGTGCCATTGTCACC 60 Query 117 GCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAAGT 176 |||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 61 GCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAACT 120 Query 177 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTATTACTTCCAGCAG-TAGTGA 235 ||||||||||||||||||||||||||||||||| ||| | |||| ||||| | | | Sbjct 121 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGGCACAACTTACAGCAACTCTT-A 179 Query 236 TGTCTATAGCTCTGCTACTGGTT-TCAACAATCCCAAAGGTCCAGACGCTAATGCATACG 294 |||| ||||| ||||| | || | || |||||||||||||||||| ||||| || Sbjct 180 CGTCTCTAGCTATGCTAGAGCTTCT-AATGGTCCCAAAGGTCCAGACGCCGATGCAGCCG 238 Query 295 AAAATGGCTACA-CA-AGTACCAGCGGACAAGTC-ATTGCCAAGGGTCGCAAGGCAAG-A 350 || |||||| || || | ||||| ||||||||| || ||||||||||||||||||| | Sbjct 239 AATATGGCT-CAACATA-TACCAATGGACAAGTCTAT-GCCAAGGGTCGCAAGGCAAACA 295 Query 351 GTTTCTTCTGCAAGTGCTTCTACCGCTAAAGGTGATGCTAAAGCTGCAGTGACTCGCAAA 410 |||||||| ||||| ||||| |||| ||| || ||| ||||||||| || ||| ||| Sbjct 296 -TTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCTGCAGCGAATCGAAAA 354 Query 411 GCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGG-CATCAAGGGTGAAGGG---TTC 466 |||||||||||||| ||||| ||| |||| || | | |||||||||||||| ||| Sbjct 355 GCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCGAC-TCAAGGGTGAAGGGCAGTTC 413 Query 467 CTCTGagaagaagaagggc 485 ||||| ||||||||||||| Sbjct 414 CTCTGGGAAGAAGAAGGGC 432 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23788700208 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5