BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62220.1
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931385 jgi|Araly1|931385|scaffold_303842.1 488 2e-137
Ahg924807 jgi|Araly1|924807|scaffold_200368.1 433 9e-121
Ahg315187 jgi|Araly1|315187|fgenesh1_pm.C_scaffold_2000220 412 1e-114
> Ahg931385 jgi|Araly1|931385|scaffold_303842.1
Length=486
Score = 488 bits (264), Expect = 2e-137
Identities = 397/459 (86%), Gaps = 17/459 (4%)
Strand=Plus/Plus
Query 37 AAGATAAA-AACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGC 95
|||| ||| || || |||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1 AAGA-AAAGAAAAAACAAAAGATGAATGCCACAAAGTGTGTTGTGCTTCTCGTGATTGGC 59
Query 96 GTTTTG-TGTGCCATTGTCACCGCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATT 154
| |||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 60 G-TTTGTTGTGCCATTGTCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATT 118
Query 155 AGGCACCTCTCTTCCAAAAAGTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGG 214
|||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||
Sbjct 119 AGGCACCTCTCTTCCAAAAACTACTACCAAAGGCGTTGGAGCTCAGCTTTTTGCTTATGG 178
Query 215 TATTACTTCCAGCAGTAGTGATGTCTATAGCTCTGCTACTGGTTTCAACAATCCCAAAGG 274
||||| ||||| |||||||||||||||| ||||| || ||| || |||||||||||
Sbjct 179 CGCTACTTACAGCACCAGTGATGTCTATAGCTTTGCTAATGCTTTTAAAAATCCCAAAGG 238
Query 275 TCCAG--ACGCTAATGCATACGAAAATGGCTACACAAGTACCAGCGGACAAGTC-ATTGC 331
||||| | || |||||||||||||||||||||||| |||||| |||| |||| || ||
Sbjct 239 TCCAGGGA-GC-AATGCATACGAAAATGGCTACACAGGTACCAACGGAGTAGTCTAT-GC 295
Query 332 CAAGGGTCGCAAGGCAAGAGTTTCTTCTGCAAGT-GCTTCTACCGCTAAAGGTGATGCTA 390
|||||||| ||||||||||||||||||||||||| | ||||| ||||| || |||||
Sbjct 296 CAAGGGTCACAAGGCAAGAGTTTCTTCTGCAAGTCG-TTCTAAAGCTAACGGCAATGCTG 354
Query 391 AAGCTGCAGTGACTCGCAAAGCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGG-CA 449
|||||||| |||||| |||||||||||||||||| ||||| ||| |||| || | |
Sbjct 355 AAGCTGCAATGACTCACAAAGCTGCTGCTGCACGTGCAAAAGGTTTGGTAAAATCCGAC- 413
Query 450 TCAAGGGTGAAGGG---TTCCTCTGagaagaagaagggc 485
|||||||||||||| |||||||| |||||||||||||
Sbjct 414 TCAAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGGC 452
> Ahg924807 jgi|Araly1|924807|scaffold_200368.1
Length=706
Score = 433 bits (234), Expect = 9e-121
Identities = 385/456 (84%), Gaps = 18/456 (4%)
Strand=Plus/Plus
Query 42 AAAAACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGCGTTTTG 101
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 10 AAAAA-AATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTG 68
Query 102 TGTGCCATTGTCACCGCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATTAGGCACC 161
||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 69 TGTGCCATTGTCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACC 128
Query 162 TCTCTTCCAAAAAGTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTATTACT 221
||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 129 TCTCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGGCACAACT 188
Query 222 TCCAGCAG-TAGTGATGTCTATAGCTCTGCTACTGGTT-TCAACAATCCCAAAGGTCCAG 279
| ||||| | | | |||| ||||| ||||| | || | || ||||||||||||||
Sbjct 189 TACAGCAACTCTT-ACGTCTCTAGCTATGCTAGAGCTTCT-AATGGTCCCAAAGGTCCAG 246
Query 280 ACGCTAATGCATACGAAAATGGCTACA-CA-AGTACCAGCGGACAAGTC-ATTGCCAAGG 336
|||| ||||| |||| |||||| || || | ||||| ||||||||| || |||||||
Sbjct 247 ACGCCGATGCAGCCGAATATGGCT-CAACATA-TACCAATGGACAAGTCTAT-GCCAAGG 303
Query 337 GTCGCAAGGCAAG-AGTTTCTTCTGCAAGTGCTTCTACCGCTAAAGGTGATGCTAAAGCT 395
|||||||||||| | |||||||| ||||| ||||| |||| ||| || ||| |||||
Sbjct 304 GTCGCAAGGCAAACA-TTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCT 362
Query 396 GCAGTGACTCGCAAAGCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGG-CATCAAG 454
|||| || ||| ||||||||||||||||| ||||| ||| |||| || | | |||||
Sbjct 363 GCAGCGAATCGAAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCGAC-TCAAG 421
Query 455 GGTGAAGGG---TTCCTCTGagaagaagaagggcaa 487
||||||||| |||||||| ||||||||||| |||
Sbjct 422 GGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGTCAA 457
> Ahg315187 jgi|Araly1|315187|fgenesh1_pm.C_scaffold_2000220
Length=444
Score = 412 bits (223), Expect = 1e-114
Identities = 370/439 (84%), Gaps = 17/439 (4%)
Strand=Plus/Plus
Query 57 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGCGTTTTGTGTGCCATTGTCACC 116
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTGTGTGCCATTGTCACC 60
Query 117 GCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAAGT 176
|||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 61 GCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAACT 120
Query 177 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTATTACTTCCAGCAG-TAGTGA 235
||||||||||||||||||||||||||||||||| ||| | |||| ||||| | | |
Sbjct 121 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGGCACAACTTACAGCAACTCTT-A 179
Query 236 TGTCTATAGCTCTGCTACTGGTT-TCAACAATCCCAAAGGTCCAGACGCTAATGCATACG 294
|||| ||||| ||||| | || | || |||||||||||||||||| ||||| ||
Sbjct 180 CGTCTCTAGCTATGCTAGAGCTTCT-AATGGTCCCAAAGGTCCAGACGCCGATGCAGCCG 238
Query 295 AAAATGGCTACA-CA-AGTACCAGCGGACAAGTC-ATTGCCAAGGGTCGCAAGGCAAG-A 350
|| |||||| || || | ||||| ||||||||| || ||||||||||||||||||| |
Sbjct 239 AATATGGCT-CAACATA-TACCAATGGACAAGTCTAT-GCCAAGGGTCGCAAGGCAAACA 295
Query 351 GTTTCTTCTGCAAGTGCTTCTACCGCTAAAGGTGATGCTAAAGCTGCAGTGACTCGCAAA 410
|||||||| ||||| ||||| |||| ||| || ||| ||||||||| || ||| |||
Sbjct 296 -TTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCTGCAGCGAATCGAAAA 354
Query 411 GCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGG-CATCAAGGGTGAAGGG---TTC 466
|||||||||||||| ||||| ||| |||| || | | |||||||||||||| |||
Sbjct 355 GCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCGAC-TCAAGGGTGAAGGGCAGTTC 413
Query 467 CTCTGagaagaagaagggc 485
||||| |||||||||||||
Sbjct 414 CTCTGGGAAGAAGAAGGGC 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23788700208
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5