BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G62225.1

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924778 jgi|Araly1|924778|scaffold_200339.1                        514    4e-145


> Ahg924778 jgi|Araly1|924778|scaffold_200339.1
Length=467

 Score =  514 bits (278),  Expect = 4e-145
 Identities = 415/480 (86%), Gaps = 14/480 (3%)
 Strand=Plus/Plus

Query  35   AGAAAACAAAAAGGAGAGACATAAAGATGAATGCTATTAAGTTTGTTGTACTTCTCTTGA  94
            ||||||||||||||||||      ||||||||||||  ||  || |||| ||||| ||||
Sbjct  1    AGAAAACAAAAAGGAGAG------AGATGAATGCTAAAAAAATTCTTGTGCTTCTTTTGA  54

Query  95   TTGGAGTTGTATGTGTCAATGTTGGTGCAATTAGGCAACTCG-AGAAAAGATCCAAAGAG  153
            |||||||||| |||  || |||||||||||||||||| |||| || || |||||||||||
Sbjct  55   TTGGAGTTGTGTGTACCACTGTTGGTGCAATTAGGCAGCTCGAAG-AAGGATCCAAAGAG  113

Query  154  ACCGAATTAAGCGTCTCTCTTCCCAAAGCTACCAAAGGCGTTGGAGCTGAATTTACAGTT  213
            ||||||||| |||||||| ||||||||||||||||||||      ||||| ||||| |||
Sbjct  114  ACCGAATTAGGCGTCTCTATTCCCAAAGCTACCAAAGGC------GCTGAGTTTACTGTT  167

Query  214  ACTGTTTATACTCAGTCTATAGGTGATGGCAATGGCTTTGGTGATGCTAAAATAAAGGGT  273
            ||| | |||||||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct  168  ACTATATATACTCAGTCTATCGGTGATGGCAATGGCTATGCTGATGCTAAAATAAAGGGT  227

Query  274  CGCAAAGGTTCCAGCAGCAATGCAATTGGAAGCGGCTCCGGAATTACTAGTGGATATGTC  333
            ||||||| ||||||||||| ||||| |||||||||||  |||| ||| || |||| ||||
Sbjct  228  CGCAAAGATTCCAGCAGCAGTGCAAATGGAAGCGGCTATGGAACTACCAGCGGATTTGTC  287

Query  334  ATTGCAAAGGGTCCCAACGCAACAGCTTTTTCTAGGAGTATTGCTTTCGGTCTAGGCCAA  393
            ||||| |||||||||||||||||||||||||||||||||| |||||| |||| |||||  
Sbjct  288  ATTGCGAAGGGTCCCAACGCAACAGCTTTTTCTAGGAGTACTGCTTTTGGTCGAGGCCGT  347

Query  394  GCTAATGCTGTAGCGGGTCGCAAAGGTGCAACCGCCAAAGGAAATGGTTTTGGACGTGGC  453
            ||| |||||| |||||||||||||||||| |||||||||||||| |||  |||| |||||
Sbjct  348  GCTGATGCTGCAGCGGGTCGCAAAGGTGCCACCGCCAAAGGAAACGGTGCTGGAGGTGGC  407

Query  454  ATTACTACTGCATTTGGCAGCACCGGGCCTAAACCGTGAGGTGATCATGCTCATTTCTCC  513
            |  |||  | ||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  408  ACAACTGTTACATATGGCAGCACCGGGCCTAAACCGTGAGGTGATCGTGCTCATTTCTCC  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29240277339


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5