BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62280.1 Length=1365 Score E Sequences producing significant alignments: (Bits) Value Ahg924774 jgi|Araly1|924774|scaffold_200335.1 1749 0.0 Ahg338156 jgi|Araly1|338156|fgenesh1_pg.C_scaffold_2000255 1085 0.0 > Ahg924774 jgi|Araly1|924774|scaffold_200335.1 Length=1201 Score = 1749 bits (947), Expect = 0.0 Identities = 1118/1202 (93%), Gaps = 6/1202 (0%) Strand=Plus/Plus Query 23 CTCTTTTTCATCGATAAACCAAGATGGAAATTCCGAGGCAAGAAATTCATATCGAAATCG 82 |||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||| | Sbjct 1 CTCTTTTTCATCGATAAACCGAGATGGAAATTCCTAGTCAAGAAATTCATATCAAAATTG 60 Query 83 ATAACTCAATACCGAGTAGTAAAGAGTTTAAAACTGGCCTAGCTGATGCTAAACCCGTTG 142 ||||| ||||| | ||||| |||||||| ||||||| ||| ||||||||||| ||||||| Sbjct 61 ATAACCCAATATCTAGTAGCAAAGAGTTAAAAACTGACCTCGCTGATGCTAACCCCGTTG 120 Query 143 TCTTGATGTCCGCT-TTGCGTAGTCTCCACGCGGGCTATTTCAGGATAAGCCTCTCTCTT 201 |||||||||||| | ||||||||||||||||||||||||||||| || ||||||||| | Sbjct 121 TCTTGATGTCCG-TCTTGCGTAGTCTCCACGCGGGCTATTTCAGAATTAGCCTCTCTGTG 179 Query 202 TGCAGCCAAGCTCTTCTGTGGAAGATAATGATCGCGCCTGAGTCACCGAGCATGTCTCAT 261 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 180 TGCAGCCAAGCTCTACTGTGGAAGATAATGATCGCGCCTGATTCACCGAGCATGTCTCAT 239 Query 262 ATGCACAGCAAACTCCCATCTATGGCGTTCCATCTCTTGTGGTACTTAGCACTTGTAACA 321 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTGCATAGCAAACTCCCATCTATGGCGTTCCATCTCTTGTGGTACTTAGCACTTGTAACA 299 Query 322 CAAGTGTCACTCTGTTTTTTGTATGCCTTGAAGTGCATTTTCTTCTTTGACAAGGTGAAG 381 ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| ||| ||| Sbjct 300 CAAGTGTCACTATGTTTTTTGTATGCCTTAAAGTGTATTTTCTTATTTGACATGGTAAAG 359 Query 382 GAAGAGTTCTTGCACTATATCGGAGTGAACTATCTCTACGCTCCATCTATTTCATGGCTT 441 |||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||| Sbjct 360 GAAGAGTTCTTGCACTATATTGGAGTGAACTATCTTTATGCTCCATCCATTTCATGGCTT 419 Query 442 CTCATGCTTCAATCAGCTCCAATGATGGAACCAAATAGCGTTTTGTATCAGACACTATTC 501 ||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 420 CTCTTGCTTCAATCAGCTCCGATGATGGAACCAAACAGCGTTTTGTATCAAACACTATTC 479 Query 502 TGGATCTTTGCTGTTCCAGTCTTGACACTAGACATAAAGCTTTATGGCCAGTGGTTCACA 561 ||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 480 TGGGTGTTTGCTGTTCCAGTCTTCACACTAGACACAAAGCTTTATGGCCAGTGGTTCACA 539 Query 562 ACGGAGAAGAGATTTTTGTCGATGCTAGCAAACCCGGCAAGCCAAGTATCGGTAATCGCA 621 || ||||| || || |||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 540 ACAGAGAAAAGGTTCTTGTCGATGCTAGCAAACCCCGCAAGCCAAGTATCCGTAATCGCA 599 Query 622 AACCTCGTGGCTGCACGAGGAGCAGCAGAGATGGGTTGGAATGAGTGTGCTCTATGCATG 681 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 600 AACCTCGTGGCTGCACGAGGAGCAGCAGAAATGGGTTGGAATGAGTGTGCTCTATGCATG 659 Query 682 TTCTCACTCGGAATGGTTCACTATTTGGTTATCTTTGTCACCCTCTATCAACGCTTACCG 741 ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 660 TTCTCCCTCGGAATGGTTCACTATTTGGTTATATTTGTCACCCTCTATCAACGGTTACCA 719 Query 742 GGAGGAAACAACTTCCCAGCCAAGTTAAGGCCAATTTTCTTCTTGTTCGTCGCTGCACCA 801 || ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| Sbjct 720 GGCGGAAACAACTTCCCAACCAAGTTAAGGCCAATTTTCTTCTTGTTCTTTGCTGCACCA 779 Query 802 GCCATGGCAAGTCTAGCCTGGAACTCTATTTGTGGAACTTTTGATGCCGTAGCGAAGATG 861 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 780 GCCATGGCAAGTCTAGCCTGGAACTCTATTTGTGGAACCTTTGATGCCGTAGCGAAAATG 839 Query 862 TTGTTCTTCCTTTCACTTTTCATCTTCATGTCCCTGGTCTGTAGGCCAAATCTTTTCAAG 921 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 840 TTGTTCTTCCTTTCACTTTTCATCTTCATGTCCCTGGTTTGTAGGCCAAATCTTTTTAAG 899 Query 922 AAATCAATGAAAAGATTCAATGTCGCGTGGTGGGCTTACTCGTTCCCACTCACTTTTCTT 981 ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||| Sbjct 900 AAATCAATGAAAAGATTCAATGTTGCATGGTGGGCTTACTCGTTCCCCCTCACTTTTCTT 959 Query 982 GCGTTAGACTCGGTTCAGTATGCGCAAGAGGTGAAAGATCC-GGTCGGTTCTGGCTTAAT 1040 ||| ||||||| ||| |||||||||||||||||||||| || ||||||||||||||| || Sbjct 960 GCGCTAGACTCAGTTAAGTATGCGCAAGAGGTGAAAGA-CCAGGTCGGTTCTGGCTTTAT 1018 Query 1041 GCTTATCTTCTCATCTATCTCAGTTTTGATCTTCCTCGGTATGATGGTACTGACAGCAGC 1100 ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1019 GCTTATCTTCTCATCCATCTCAGTTTTAATCTTCCTTGGTATGATGGTACTGACAGCAGC 1078 Query 1101 AAACAGCAATAGACTACTCAGACACGATC-CTGTTCTTGGTTCTGCTACAGATCCAAAAG 1159 |||||||||| |||||||||||| |||| | || || |||||||||||||||| ||||| Sbjct 1079 AAACAGCAATCGACTACTCAGACGTGATCAC-GTCCTCGGTTCTGCTACAGATCAAAAAG 1137 Query 1160 ACAAACAAAAAACATTGTCGCTCAATGCGACTAACCAAAACTAGTCTACCCTTGAGATAG 1219 ||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||| Sbjct 1138 ACAAACAAATAACATTGTCGCTCAATGTGACTAACCAAAGCTAGTCTACACTTGAGATAG 1197 Query 1220 AA 1221 || Sbjct 1198 AA 1199 > Ahg338156 jgi|Araly1|338156|fgenesh1_pg.C_scaffold_2000255 Length=3732 Score = 1085 bits (587), Expect = 0.0 Identities = 941/1106 (85%), Gaps = 47/1106 (4%) Strand=Plus/Plus Query 46 ATGGAAATTCCGAGGCAAGAAATTCATATCGAA-ATCGATAACTCAATACCGAGTAG-TA 103 ||||||||||| || ||||||||||||||| || || |||||| ||| | | || || | Sbjct 1 ATGGAAATTCCTAGTCAAGAAATTCATATC-AAGATTGATAACCCAAGATCAAGCAGCAA 59 Query 104 -AAGAGTTTAAA-ACTGGCCTAGCTGATGCTAAACCCGTTGTCTTGATGTCCGCTTTGCG 161 ||||| ||| ||| ||| |||||||| ||||| ||||| ||||||| | |||| | Sbjct 60 CAAGAG---AAAGACTAACCTCGCTGATGCCGAACCCATTGTCCTGATGTCTGTTTTGAG 116 Query 162 TAGTCTCCACGCGGGCTATTTCAGGATAAGCCTCTCTCTTTGCAGCCAAGCTCTT-CTGT 220 ||||||||| ||||| |||||||| ||||| || ||||| || |||||||| || ||| Sbjct 117 TAGTCTCCATGCGGGATATTTCAGAATAAGTCTTTCTCTATGTAGCCAAGC-ATTGTTGT 175 Query 221 GGAAGATAATGATCGCGCCTGAGTCACCGAGCATGTCTCATATGCACAGCAAACTCCCAT 280 ||||||| | | || || | || | | |||| ||| ||||||| | Sbjct 176 GGAAGAT-A--A-------TG-GT---C---CA----T--T-TGCATAGCGAACTCCCGT 211 Query 281 CTATGGCGT-TCCATCTCTTGTGGTACTTAGCACTTGTAACACAAGTGTCACTCTGTTTT 339 ||||||| | | |||||||||||||| ||||||||| ||||||||| ||||||||||| Sbjct 212 CTATGGCATAT-TATCTCTTGTGGTACCTAGCACTTGCAACACAAGTATCACTCTGTTTA 270 Query 340 TTGTATGCCTTGAAGTGCATTTTCTTCTTTGACAAGGTGAAGGAAGAGTTCTTGCACTAT 399 ||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||| Sbjct 271 TTGTATGCCTTCAAGTGTATTTTCCTCTTTGACATGGTGAAGGAAGAGTTCTTGCACTAT 330 Query 400 ATCGGAGTGAACTATCTCTACGCTCCATCTATTTCATGGCTTCTCA-TGCTTCAATCAGC 458 || |||||||||||||| ||||||||||| |||||||| ||||| | ||||||||||||| Sbjct 331 ATTGGAGTGAACTATCTTTACGCTCCATCCATTTCATGCCTTCT-ATTGCTTCAATCAGC 389 Query 459 TCCAATGATGGAACCAAATAGCGTTTTGTATCAGACACTATTCTGGATCTTTGCTGTTCC 518 ||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct 390 TCCGATGATCAAACCACATAGCGTTTTGTATCAGACACTATTCTGGATCTTTGTTGTCCC 449 Query 519 AGTCTTGACACTAGACATAAAGCTTTATGGCCAGTGGTTCACAACGGAGAAGAGATTTTT 578 ||||||||| ||||||| |||||||||||| || ||||||||||| ||||| || ||||| Sbjct 450 AGTCTTGACCCTAGACACAAAGCTTTATGGACAATGGTTCACAACAGAGAAAAGGTTTTT 509 Query 579 GTCGATGCTAGCAAACCCGGCAAGCCAAGTATCGGTAATCGCAAACCTCGTGGCTGCACG 638 |||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||| | Sbjct 510 GTCGATAATGGCAAACCCGGCAAGCCAAGTATCAGTAATCGCAAACCTAGTGGCTGCAAG 569 Query 639 AGGAGCAGCAGAGATGGGTTGGAATGAGTGTGCTCTATGCATGTTCTCACTCGGAATGGT 698 ||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||||| Sbjct 570 GGGAGCAGCAGAGATGGGTTGGAAAGAGTGTGCTCTATGCTTGTTCTCACTTGGGATGGT 629 Query 699 TCACTATTTGGTTATCTTTGTCACCCTCTATCAACGCTTACCGGGAGGAAACAACTTCCC 758 ||| |||||||||||||||||||| || |||||||||||||| || |||||||| ||||| Sbjct 630 TCATTATTTGGTTATCTTTGTCACACTTTATCAACGCTTACCAGGCGGAAACAATTTCCC 689 Query 759 AGCCAAGTTAAGGCCAATTTTCTTCTTGTTCGTCGCTGCACCAGCCA-TGGCAAGTCTAG 817 | ||| | |||| || ||||||||||||| ||||||||||||| | || ||||||||| Sbjct 690 AACCACGCTAAGACCGGTTTTCTTCTTGTTTTTCGCTGCACCAGCGACTG-CAAGTCTAG 748 Query 818 CCTGGAACTCTATTTGTGGAACTTTTGATGCCGTAGCGAAGATGTTGTTCTTCCTTTCAC 877 | |||||||||||||||||||| |||||| | |||| |||||||| ||||||||||||| Sbjct 749 CTTGGAACTCTATTTGTGGAACCTTTGATACTATAGCCAAGATGTTATTCTTCCTTTCAC 808 Query 878 TTTTCATCTTCATGTCCCTGGTCTGTAGGCCAAATCTTTTCAAGAAATCAATGAAAAGAT 937 | |||||||| ||||||||||| ||||||||||||||||| ||||| || || ||||||| Sbjct 809 TCTTCATCTTTATGTCCCTGGTTTGTAGGCCAAATCTTTTGAAGAAGTCGATAAAAAGAT 868 Query 938 TCAATGTCGCGTGGTGGGCTTACTCGTTCCC-ACTCACTTTTCTTGCGTTAGACTCGGTT 996 ||||||||||||||||||||||||| ||||| | |||| |||||||| |||||||||||| Sbjct 869 TCAATGTCGCGTGGTGGGCTTACTCATTCCCTA-TCACATTTCTTGCTTTAGACTCGGTT 927 Query 997 CAGTATGCGCAAGAGGTGAAAGATCCG-GTCGGTTCTGG-CTTAATGCTTATCTTCTCAT 1054 ||||| ||||||||||||||||| || |||| ||| || ||| ||| |||||||||||| Sbjct 928 CAGTACGCGCAAGAGGTGAAAGA-CCATGTCGCTTC-GGTCTTGATGTTTATCTTCTCAT 985 Query 1055 CTATCTCAGTTTTGATCTTCCTCGGTATGATGGTACTGACAGCAGCAAACAGCAATAGAC 1114 | |||||||||||||| ||| | ||| ||||| |||||||||||||||||||||| ||| Sbjct 986 CCATCTCAGTTTTGATATTCTTTGGTGTGATGTTACTGACAGCAGCAAACAGCAAAAGAT 1045 Query 1115 TACTCAGACACGATCCTGTTCT-TGG 1139 ||||||||| |||| ||| || ||| Sbjct 1046 TACTCAGACGTGATCATGTCCTCTGG 1071 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51084708780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5