BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62280.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924774 jgi|Araly1|924774|scaffold_200335.1 1749 0.0
Ahg338156 jgi|Araly1|338156|fgenesh1_pg.C_scaffold_2000255 1085 0.0
> Ahg924774 jgi|Araly1|924774|scaffold_200335.1
Length=1201
Score = 1749 bits (947), Expect = 0.0
Identities = 1118/1202 (93%), Gaps = 6/1202 (0%)
Strand=Plus/Plus
Query 23 CTCTTTTTCATCGATAAACCAAGATGGAAATTCCGAGGCAAGAAATTCATATCGAAATCG 82
|||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||| |
Sbjct 1 CTCTTTTTCATCGATAAACCGAGATGGAAATTCCTAGTCAAGAAATTCATATCAAAATTG 60
Query 83 ATAACTCAATACCGAGTAGTAAAGAGTTTAAAACTGGCCTAGCTGATGCTAAACCCGTTG 142
||||| ||||| | ||||| |||||||| ||||||| ||| ||||||||||| |||||||
Sbjct 61 ATAACCCAATATCTAGTAGCAAAGAGTTAAAAACTGACCTCGCTGATGCTAACCCCGTTG 120
Query 143 TCTTGATGTCCGCT-TTGCGTAGTCTCCACGCGGGCTATTTCAGGATAAGCCTCTCTCTT 201
|||||||||||| | ||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 121 TCTTGATGTCCG-TCTTGCGTAGTCTCCACGCGGGCTATTTCAGAATTAGCCTCTCTGTG 179
Query 202 TGCAGCCAAGCTCTTCTGTGGAAGATAATGATCGCGCCTGAGTCACCGAGCATGTCTCAT 261
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 TGCAGCCAAGCTCTACTGTGGAAGATAATGATCGCGCCTGATTCACCGAGCATGTCTCAT 239
Query 262 ATGCACAGCAAACTCCCATCTATGGCGTTCCATCTCTTGTGGTACTTAGCACTTGTAACA 321
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGCATAGCAAACTCCCATCTATGGCGTTCCATCTCTTGTGGTACTTAGCACTTGTAACA 299
Query 322 CAAGTGTCACTCTGTTTTTTGTATGCCTTGAAGTGCATTTTCTTCTTTGACAAGGTGAAG 381
||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| ||| |||
Sbjct 300 CAAGTGTCACTATGTTTTTTGTATGCCTTAAAGTGTATTTTCTTATTTGACATGGTAAAG 359
Query 382 GAAGAGTTCTTGCACTATATCGGAGTGAACTATCTCTACGCTCCATCTATTTCATGGCTT 441
|||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct 360 GAAGAGTTCTTGCACTATATTGGAGTGAACTATCTTTATGCTCCATCCATTTCATGGCTT 419
Query 442 CTCATGCTTCAATCAGCTCCAATGATGGAACCAAATAGCGTTTTGTATCAGACACTATTC 501
||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 420 CTCTTGCTTCAATCAGCTCCGATGATGGAACCAAACAGCGTTTTGTATCAAACACTATTC 479
Query 502 TGGATCTTTGCTGTTCCAGTCTTGACACTAGACATAAAGCTTTATGGCCAGTGGTTCACA 561
||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 480 TGGGTGTTTGCTGTTCCAGTCTTCACACTAGACACAAAGCTTTATGGCCAGTGGTTCACA 539
Query 562 ACGGAGAAGAGATTTTTGTCGATGCTAGCAAACCCGGCAAGCCAAGTATCGGTAATCGCA 621
|| ||||| || || |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 540 ACAGAGAAAAGGTTCTTGTCGATGCTAGCAAACCCCGCAAGCCAAGTATCCGTAATCGCA 599
Query 622 AACCTCGTGGCTGCACGAGGAGCAGCAGAGATGGGTTGGAATGAGTGTGCTCTATGCATG 681
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 AACCTCGTGGCTGCACGAGGAGCAGCAGAAATGGGTTGGAATGAGTGTGCTCTATGCATG 659
Query 682 TTCTCACTCGGAATGGTTCACTATTTGGTTATCTTTGTCACCCTCTATCAACGCTTACCG 741
||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 660 TTCTCCCTCGGAATGGTTCACTATTTGGTTATATTTGTCACCCTCTATCAACGGTTACCA 719
Query 742 GGAGGAAACAACTTCCCAGCCAAGTTAAGGCCAATTTTCTTCTTGTTCGTCGCTGCACCA 801
|| ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 720 GGCGGAAACAACTTCCCAACCAAGTTAAGGCCAATTTTCTTCTTGTTCTTTGCTGCACCA 779
Query 802 GCCATGGCAAGTCTAGCCTGGAACTCTATTTGTGGAACTTTTGATGCCGTAGCGAAGATG 861
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 780 GCCATGGCAAGTCTAGCCTGGAACTCTATTTGTGGAACCTTTGATGCCGTAGCGAAAATG 839
Query 862 TTGTTCTTCCTTTCACTTTTCATCTTCATGTCCCTGGTCTGTAGGCCAAATCTTTTCAAG 921
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 840 TTGTTCTTCCTTTCACTTTTCATCTTCATGTCCCTGGTTTGTAGGCCAAATCTTTTTAAG 899
Query 922 AAATCAATGAAAAGATTCAATGTCGCGTGGTGGGCTTACTCGTTCCCACTCACTTTTCTT 981
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 900 AAATCAATGAAAAGATTCAATGTTGCATGGTGGGCTTACTCGTTCCCCCTCACTTTTCTT 959
Query 982 GCGTTAGACTCGGTTCAGTATGCGCAAGAGGTGAAAGATCC-GGTCGGTTCTGGCTTAAT 1040
||| ||||||| ||| |||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 960 GCGCTAGACTCAGTTAAGTATGCGCAAGAGGTGAAAGA-CCAGGTCGGTTCTGGCTTTAT 1018
Query 1041 GCTTATCTTCTCATCTATCTCAGTTTTGATCTTCCTCGGTATGATGGTACTGACAGCAGC 1100
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1019 GCTTATCTTCTCATCCATCTCAGTTTTAATCTTCCTTGGTATGATGGTACTGACAGCAGC 1078
Query 1101 AAACAGCAATAGACTACTCAGACACGATC-CTGTTCTTGGTTCTGCTACAGATCCAAAAG 1159
|||||||||| |||||||||||| |||| | || || |||||||||||||||| |||||
Sbjct 1079 AAACAGCAATCGACTACTCAGACGTGATCAC-GTCCTCGGTTCTGCTACAGATCAAAAAG 1137
Query 1160 ACAAACAAAAAACATTGTCGCTCAATGCGACTAACCAAAACTAGTCTACCCTTGAGATAG 1219
||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 1138 ACAAACAAATAACATTGTCGCTCAATGTGACTAACCAAAGCTAGTCTACACTTGAGATAG 1197
Query 1220 AA 1221
||
Sbjct 1198 AA 1199
> Ahg338156 jgi|Araly1|338156|fgenesh1_pg.C_scaffold_2000255
Length=3732
Score = 1085 bits (587), Expect = 0.0
Identities = 941/1106 (85%), Gaps = 47/1106 (4%)
Strand=Plus/Plus
Query 46 ATGGAAATTCCGAGGCAAGAAATTCATATCGAA-ATCGATAACTCAATACCGAGTAG-TA 103
||||||||||| || ||||||||||||||| || || |||||| ||| | | || || |
Sbjct 1 ATGGAAATTCCTAGTCAAGAAATTCATATC-AAGATTGATAACCCAAGATCAAGCAGCAA 59
Query 104 -AAGAGTTTAAA-ACTGGCCTAGCTGATGCTAAACCCGTTGTCTTGATGTCCGCTTTGCG 161
||||| ||| ||| ||| |||||||| ||||| ||||| ||||||| | |||| |
Sbjct 60 CAAGAG---AAAGACTAACCTCGCTGATGCCGAACCCATTGTCCTGATGTCTGTTTTGAG 116
Query 162 TAGTCTCCACGCGGGCTATTTCAGGATAAGCCTCTCTCTTTGCAGCCAAGCTCTT-CTGT 220
||||||||| ||||| |||||||| ||||| || ||||| || |||||||| || |||
Sbjct 117 TAGTCTCCATGCGGGATATTTCAGAATAAGTCTTTCTCTATGTAGCCAAGC-ATTGTTGT 175
Query 221 GGAAGATAATGATCGCGCCTGAGTCACCGAGCATGTCTCATATGCACAGCAAACTCCCAT 280
||||||| | | || || | || | | |||| ||| ||||||| |
Sbjct 176 GGAAGAT-A--A-------TG-GT---C---CA----T--T-TGCATAGCGAACTCCCGT 211
Query 281 CTATGGCGT-TCCATCTCTTGTGGTACTTAGCACTTGTAACACAAGTGTCACTCTGTTTT 339
||||||| | | |||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 212 CTATGGCATAT-TATCTCTTGTGGTACCTAGCACTTGCAACACAAGTATCACTCTGTTTA 270
Query 340 TTGTATGCCTTGAAGTGCATTTTCTTCTTTGACAAGGTGAAGGAAGAGTTCTTGCACTAT 399
||||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 271 TTGTATGCCTTCAAGTGTATTTTCCTCTTTGACATGGTGAAGGAAGAGTTCTTGCACTAT 330
Query 400 ATCGGAGTGAACTATCTCTACGCTCCATCTATTTCATGGCTTCTCA-TGCTTCAATCAGC 458
|| |||||||||||||| ||||||||||| |||||||| ||||| | |||||||||||||
Sbjct 331 ATTGGAGTGAACTATCTTTACGCTCCATCCATTTCATGCCTTCT-ATTGCTTCAATCAGC 389
Query 459 TCCAATGATGGAACCAAATAGCGTTTTGTATCAGACACTATTCTGGATCTTTGCTGTTCC 518
||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 390 TCCGATGATCAAACCACATAGCGTTTTGTATCAGACACTATTCTGGATCTTTGTTGTCCC 449
Query 519 AGTCTTGACACTAGACATAAAGCTTTATGGCCAGTGGTTCACAACGGAGAAGAGATTTTT 578
||||||||| ||||||| |||||||||||| || ||||||||||| ||||| || |||||
Sbjct 450 AGTCTTGACCCTAGACACAAAGCTTTATGGACAATGGTTCACAACAGAGAAAAGGTTTTT 509
Query 579 GTCGATGCTAGCAAACCCGGCAAGCCAAGTATCGGTAATCGCAAACCTCGTGGCTGCACG 638
|||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||| |
Sbjct 510 GTCGATAATGGCAAACCCGGCAAGCCAAGTATCAGTAATCGCAAACCTAGTGGCTGCAAG 569
Query 639 AGGAGCAGCAGAGATGGGTTGGAATGAGTGTGCTCTATGCATGTTCTCACTCGGAATGGT 698
||||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||
Sbjct 570 GGGAGCAGCAGAGATGGGTTGGAAAGAGTGTGCTCTATGCTTGTTCTCACTTGGGATGGT 629
Query 699 TCACTATTTGGTTATCTTTGTCACCCTCTATCAACGCTTACCGGGAGGAAACAACTTCCC 758
||| |||||||||||||||||||| || |||||||||||||| || |||||||| |||||
Sbjct 630 TCATTATTTGGTTATCTTTGTCACACTTTATCAACGCTTACCAGGCGGAAACAATTTCCC 689
Query 759 AGCCAAGTTAAGGCCAATTTTCTTCTTGTTCGTCGCTGCACCAGCCA-TGGCAAGTCTAG 817
| ||| | |||| || ||||||||||||| ||||||||||||| | || |||||||||
Sbjct 690 AACCACGCTAAGACCGGTTTTCTTCTTGTTTTTCGCTGCACCAGCGACTG-CAAGTCTAG 748
Query 818 CCTGGAACTCTATTTGTGGAACTTTTGATGCCGTAGCGAAGATGTTGTTCTTCCTTTCAC 877
| |||||||||||||||||||| |||||| | |||| |||||||| |||||||||||||
Sbjct 749 CTTGGAACTCTATTTGTGGAACCTTTGATACTATAGCCAAGATGTTATTCTTCCTTTCAC 808
Query 878 TTTTCATCTTCATGTCCCTGGTCTGTAGGCCAAATCTTTTCAAGAAATCAATGAAAAGAT 937
| |||||||| ||||||||||| ||||||||||||||||| ||||| || || |||||||
Sbjct 809 TCTTCATCTTTATGTCCCTGGTTTGTAGGCCAAATCTTTTGAAGAAGTCGATAAAAAGAT 868
Query 938 TCAATGTCGCGTGGTGGGCTTACTCGTTCCC-ACTCACTTTTCTTGCGTTAGACTCGGTT 996
||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||||
Sbjct 869 TCAATGTCGCGTGGTGGGCTTACTCATTCCCTA-TCACATTTCTTGCTTTAGACTCGGTT 927
Query 997 CAGTATGCGCAAGAGGTGAAAGATCCG-GTCGGTTCTGG-CTTAATGCTTATCTTCTCAT 1054
||||| ||||||||||||||||| || |||| ||| || ||| ||| ||||||||||||
Sbjct 928 CAGTACGCGCAAGAGGTGAAAGA-CCATGTCGCTTC-GGTCTTGATGTTTATCTTCTCAT 985
Query 1055 CTATCTCAGTTTTGATCTTCCTCGGTATGATGGTACTGACAGCAGCAAACAGCAATAGAC 1114
| |||||||||||||| ||| | ||| ||||| |||||||||||||||||||||| |||
Sbjct 986 CCATCTCAGTTTTGATATTCTTTGGTGTGATGTTACTGACAGCAGCAAACAGCAAAAGAT 1045
Query 1115 TACTCAGACACGATCCTGTTCT-TGG 1139
||||||||| |||| ||| || |||
Sbjct 1046 TACTCAGACGTGATCATGTCCTCTGG 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5