BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62290.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475117 jgi|Araly1|475117|fgenesh2_kg.2__247__AT1G62290.2 2628 0.0
Ahg471340 jgi|Araly1|471340|fgenesh2_kg.1__1294__AT1G11910.1 1219 0.0
> Ahg475117 jgi|Araly1|475117|fgenesh2_kg.2__247__AT1G62290.2
Length=1726
Score = 2628 bits (1423), Expect = 0.0
Identities = 1617/1711 (95%), Gaps = 11/1711 (1%)
Strand=Plus/Plus
Query 77 GGTCAAAATGGGAGTATACTCGAGAGCGGTTGCGTTTTCGGTCTTTGTGTCGTTTCTGCT 136
||||| ||||||||||||| | ||| | |||||| ||||| ||||||||| ||| || ||
Sbjct 19 GGTCAGAATGGGAGTATACACAAGAACAGTTGCGGTTTCGCTCTTTGTGTGGTTCCTACT 78
Query 137 GTTTTTCACTGCT-TATTCTAAGAGAAATGATGGAACATTCAGAGTTGGCCTGAAAAAAC 195
||||||||||| | | |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 79 GTTTTTCACTG-TCTCTTCTCAGAGAAATGATGGAACATTCAGAGTTGGCTTGAAAAAAC 137
Query 196 TGAAGTTGGATCCTAACAACCGACTCGCAACACGCTTTGGTTCCAAGCAAGAAGAGGCCT 255
| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 138 TAAAGTTGGATCCCAACAACCGACTTGCAACACGCTTTGGTTCCAAGCAAGAAGAGGCCT 197
Query 256 TGAGATCTTCTTTGCGTTCGTACAACAACAATCTTGGTGGTGATTCTGGAGATGCTGATA 315
|||| || ||||| | |||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 198 TGAGGTCCTCTTTACCTTCGTACAACAACAATCTTGGTAGTGATTCTGGAGATGCTGACA 257
Query 316 TTGTCCCGCTCAAGAATTACTTGGATGCTCAGTACTATGGTGAGATTGCTATTGGTACTC 375
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 258 TTGTCCCGCTCAAGAATTACTTGGATGCTCAGTATTATGGTGAGATTGCTATCGGTACTC 317
Query 376 CACCGCAGAAGTTCACTGTCATTTTTGATACCGGAAGCTCTAACCTTTGGGTGCCATCAG 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CACCGCAGAAGTTCACTGTCATTTTTGATACCGGAAGCTCTAACCTTTGGGTGCCATCAG 377
Query 436 GAAAATGTTTTTTCTCGCTGTCTTGTTACTTTCATGCTAAGTACAAGTCCTCGCGATCAA 495
||||||||||||||||||||||||||| ||||||||| |||| ||||||||| || ||||
Sbjct 378 GAAAATGTTTTTTCTCGCTGTCTTGTTTCTTTCATGCCAAGTTCAAGTCCTCACGCTCAA 437
Query 496 GCACATATAAGAAGAGTGGAAAACGTGCCGCAATCCATTACGGCTCAGGATCAATCTCTG 555
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 438 GCACATATAAGAAGAGTGGAAAACGTGCCGCAATCCATTACGGCTCAGGATCGATCTCTG 497
Query 556 GTTTCTTTAGTTATGATGCTGTCACGGTTGGTGATTTGGTTGTCAAAGATCAGGAGTTTA 615
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 498 GTTTCTTTAGTTATGATGCTGTTACGGTTGGTGATTTGGTTGTCAAAGATCAGGAGTTTA 557
Query 616 TTGAGACAACCAGTGAGCCTGGTTTAACATTCCTGGTGGCTAAGTTTGATGGTCTTCTTG 675
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TTGAGGCAACCAGTGAGCCTGGTTTAACATTCCTGGTGGCTAAGTTTGATGGTCTTCTTG 617
Query 676 GTCTTGGGTTCCAAGAGATCGCTGTTGGAAACGCTACTCCTGTTTGGTACAATATGCTCA 735
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GTCTTGGATTCCAAGAGATCGCTGTTGGAAACGCTACTCCTGTTTGGTACAATATGCTCA 677
Query 736 AGCAAGGCCTTATAAAGAGGCCGGTCTTTTCATTTTGGCTTAACCGTGATCCAAAGAGTG 795
||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 678 AGCAAGGCCTTATCGAGAGACCGGTGTTTTCATTTTGGCTTAACCGTGACCCAAAGAGTG 737
Query 796 AAGAAGGCGGTGAAATCGTATTCGGAGGTGTTGATCCAAAGCATTTTAGAGGAGAACATA 855
|||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct 738 AAGAAGGCGGTGAAATCGTATTTGGAGGTGTTGATCCTAAGCATTTCAAAGGAGAACATA 797
Query 856 CATTTGTTCCTGTGACACAAAGGGGTTACTGGCAGTTCGACATGGGTGAGGTTCTCATTG 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 CATTTGTTCCTGTGACACAAAGGGGTTACTGGCAGTTCGACATGGGTGAGGTTCTCATTG 857
Query 916 CCGGTGAATCTACTGGATATTGTGGAAGTGGTTGTTCTGCGATAGCAGATTCTGGAACAT 975
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 858 CCGGTGATTCTACTGGATATTGTGGAAGTGGTTGTTCGGCGATAGCAGATTCTGGAACGT 917
Query 976 CGTTACTTGC-GGGTCCAACGGCTGTGGTTGCCATGATAAATAAGGCTATTGGAGCATCT 1034
| |||||||| ||| || ||||||||| ||||||||||||| || ||||||||||| |||
Sbjct 918 CTTTACTTGCAGGG-CCGACGGCTGTGATTGCCATGATAAACAAAGCTATTGGAGCCTCT 976
Query 1035 GGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGAT 1094
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 977 GGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGATCAGTATGGACAAACCATTTTGGAT 1036
Query 1095 TTACTTTTGGCTGAGACTCAACCAAAGAAGATTTGCTCACAAATTGGTCTTTGCGCTTAC 1154
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1037 TTACTTTTGGCTGAGACTCAACCAAAGAAGATCTGCTCACAAATTGGTCTTTGCGCTTTC 1096
Query 1155 GATGGCACCCATGGGGTCAGTATGGGGATTGAATCGGTGGTGGACAAGGAAAACACAAGA 1214
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1097 GATGGCACCCACGGGGTCAGTATGGGGATTGAGTCGGTGGTGGACAAGGAAAACACGAGA 1156
Query 1215 TCATCTAGTGGTCTTCGAGACGCGGGTTGTCCTGCATGTGAAATGGCGGTTGTGTGGATA 1274
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1157 TCATCTAGTGGTCTTCGAGATGCCGGTTGTCCTGCATGTGAAATGGCGGTTGTGTGGATA 1216
Query 1275 CAGAGCCAATTGAGGCAGAACATGACTCAAGAGAGGATAGTGAACTACATTAATGAGATA 1334
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1217 CAGAGCCAATTGAGGCAGAACATGACTCAAGAGCGGATAGTGAACTACATTAATGAGATA 1276
Query 1335 TGCGAGCGCATGCCTAGTCCAAATGGAGAGTCTGCTGTTGACTGCTCACAACTTTCTAA- 1393
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 1277 TGCGAGCGCATGCCTAGTCCAAATGGAGAGTCTGCAGTTGATTGCTCACAACTCTC-AAC 1335
Query 1394 AATGCCTACTGTTTCATTCACCATTGGAGGCAAAGTCTTTGATCTTGCTCCCGAAGAGTA 1453
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1336 AATGCCCACTGTTTCATTCACCATTGGAGGCAAAGTATTTGATCTTGCTCCAGAAGAGTA 1395
Query 1454 CGTACTGAAGATTGGGGAAGGACCAGTGGCACAATGTATTAGCGGCTTTACCGCACTTGA 1513
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1396 CGTACTGAAGATTGGGGAAGGACCAGTGGCACAATGCATTAGCGGCTTTACCGCACTTGA 1455
Query 1514 TATCCCTCCACCTCGTGGACCTCTCTGGATACTTGGAGATGTGTTTATGGGAAAATACCA 1573
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1456 CATCCCTCCACCTCGTGGACCTCTCTGGATACTTGGAGATGTGTTTATGGGCAAATACCA 1515
Query 1574 CACTGTCTTTGACTTCGGAAACGAGCAGGTTGGCTTCGCAGAAGCCGTGTGAAAAATGTA 1633
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1516 CACTGTCTTTGACTTCGGAAACGAGCAGGTTGGGTTCGCAGAAGCTGTGTGAAAAATGTA 1575
Query 1634 ACATCGAT-C--T-TTT-GTTGATATGTTTTTGGTGTGAGAGCTTTGTTGTGTTGTGTTT 1688
|||||| | | | ||| |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1576 ACATCGGTTCGGTCTTTTGTTGATGTGTTTTTGGTGTGAGAGCTTTGCTGTGTTGTGTTT 1635
Query 1689 ACATGGAGAGGTTTTAAGAATGAAGCCTCGTTGTTGTTGTTAACAATGTTTTGCCATAAA 1748
| ||||| ||||||||||| |||||||| |||||||||||||| |||||||| | |||||
Sbjct 1636 ATATGGAAAGGTTTTAAGAGTGAAGCCTTGTTGTTGTTGTTAAAAATGTTTTTCTATAAA 1695
Query 1749 CATACGTTAAAGCTTTGGGGATGTTTTCTTT 1779
|||||||| ||||||||| ||||||||||||
Sbjct 1696 CATACGTTGAAGCTTTGGAGATGTTTTCTTT 1726
> Ahg471340 jgi|Araly1|471340|fgenesh2_kg.1__1294__AT1G11910.1
Length=1856
Score = 1219 bits (660), Expect = 0.0
Identities = 1265/1549 (82%), Gaps = 73/1549 (5%)
Strand=Plus/Plus
Query 93 TACTCGAGAGCGGTTGCGT-TTTCGGTCTTTGTGTCGTTTCTGCTGTTTTTCACTG-CTT 150
||||| | | ||||||| | || | || ||||||| || || ||||||||| ||| |||
Sbjct 121 TACTCTACAACGGTTGC-TGTTGCACTCATTGTGTCATTCCTACTGTTTTTCTCTGCCTT 179
Query 151 ATTCTAAGAGAAATGATGGAACATTCAGAGTTGGCCTGAAAAAACTGAAGTTGGA-TCCT 209
|||| || | ||||| || || |||||||||||||| |||||||| |||||||| |||
Sbjct 180 -TTCTGAGCGCAATGACGGGACCTTCAGAGTTGGCCTCAAAAAACTCAAGTTGGATTCC- 237
Query 210 AACAACCGACTCGCAACACGCTTTGGTTCCAAGCAAGA-AGAGGCCTTGAGATCTTCTTT 268
|| ||||| || ||| ||||| | | |||| |||||| | || || |||||
Sbjct 238 AAAAACCGGCTTGCAGCACGCGTCGAATCCAGGCAAGATA-AGCCCCTGAGA-------- 288
Query 269 GCGTTCGTACAACAACAATCTTGGTGGTGATTCTGGAGATGCTGATATTGTCCCGCTCAA 328
|| | | ||| | | | ||| |||||| |||||||||| ||||| ||| ||
Sbjct 289 GC--T--T---ACAGC---C-T--TGGAAATTCTGAAGATGCTGATGTTGTCGTGCTTAA 335
Query 329 GAATTACT-TGGATGCTCAGTACTATGGTGAGATTGCTATTGGTACTCCACCGCAGAAGT 387
|||||| | | |||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 336 GAATTA-TCTAGATGCTCAGTACTACGGTGAGATCGCTATTGGTACTCCACCTCAGAAGT 394
Query 388 TCACTGTCATTTTTGATACCGGAAGCTCTAACCTTTGGGTGCCATCAGGAAAATGTTTTT 447
||||||| ||||||| || || ||||||||||| |||||||||||| |||||| | ||
Sbjct 395 TCACTGTGGTTTTTGACACTGGGAGCTCTAACCTCTGGGTGCCATCATCAAAATGCTATT 454
Query 448 TCTCGC-TGTCTTGT-TACTTTCATGCTAAGTACAAGTCCTCGCGATCAAGCACATATAA 505
|||||| || | ||| | ||| ||| | || |||||||| ||||| |||||||||||| |
Sbjct 455 TCTCGCTTG-CATGTCT-CTTGCATCCCAAATACAAGTCTTCGCGTTCAAGCACATATGA 512
Query 506 GAAGAGTGGAAAA-CGTGCCGCAATCCATTACGGCTCAGGAT-CAATCT-CTGGTTTCTT 562
||||| ||||||| | ||||||||| ||||| ||| | || | |||| | ||||||| ||
Sbjct 513 GAAGAATGGAAAATC-TGCCGCAATTCATTATGGCACTGG-TGCAAT-TGCTGGTTT-TT 568
Query 563 T-AGTTATGATGCTGTCACGGTTGGTGATTTGGTTGTCAAAGATCAGGAGTTTATTGAGA 621
| ||| ||||||| ||||| ||||| ||||| |||||||| |||||||| |||||||||
Sbjct 569 TCAGTAATGATGCCGTCACAGTTGGCGATTTAGTTGTCAAGGATCAGGAATTTATTGAGG 628
Query 622 CAACC-AGTGAGCCTGGTTTAACATTCCTGGTGGCTAAGTTTGATGGTCTTCTTGGTCTT 680
||||| || ||||||||| ||||||| | || ||||||||||||||| | |||||||||
Sbjct 629 CAACCAAG-GAGCCTGGTATAACATTTGTTGTAGCTAAGTTTGATGGTATCCTTGGTCTT 687
Query 681 GGGTTCCAAGAGATCGCTGTTGGAAACGCTACTCCTGTTTGGTACAATATGCTCAAGCAA 740
|| |||||||||||| |||||||||| || ||||| |||||||||| ||||||||||||
Sbjct 688 GGATTCCAAGAGATCTCTGTTGGAAATGCCGCTCCTCTTTGGTACAACATGCTCAAGCAA 747
Query 741 GGCCTTAT-AAAGAGGCCGGTCTTTTCATTTTGGCTTAACCGTGATCCA-AAGAGTGAAG 798
|||||||| || || ||| || ||||||||||||||||||||| || || | || ||||
Sbjct 748 GGCCTTATCAAGGA-GCCAGTTTTTTCATTTTGGCTTAACCGTAATGCAGATGA-AGAAG 805
Query 799 AAGGCGGTGAAATCGTATTCGGAGGTGTTGATCCAAAGCATTT-TAGAGG-AGAACATAC 856
|||| |||||| | ||||| ||||||||||||||||| ||||| || || | |||||||
Sbjct 806 AAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCAAATCATTTCAAG-GGCA-AACATAC 863
Query 857 ATTTGTTCCTGTGACACAAAGGGGTTACTGGCAGTTCGACATGGGTGAGGTTCTCATTGC 916
|| ||||||||||||||||| || ||||||||||| ||||||||||| || || ||||
Sbjct 864 ATATGTTCCTGTGACACAAAAAGGCTACTGGCAGTTTGACATGGGTGATGTCCTTATTGG 923
Query 917 CGGTGAATCTACTGGATAT-TGTGGAAGTGGTTGTTCTGCGATAGCAGATTCTGGAACAT 975
||||| | | ||||| | | |||| |||||| ||||||||||||||||||||||| ||||
Sbjct 924 CGGTGCACCCACTGGGT-TCTGTGAAAGTGGCTGTTCTGCGATAGCAGATTCTGGTACAT 982
Query 976 CGTTACTTGCGGGTCCAACGGCTGTGGTTGCCATGATAAATAAGGCTATTGGAGCATCTG 1035
| || ||||| ||||||||| || | | |||||||||| | |||||||||||| |||
Sbjct 983 CTTTGCTTGCAGGTCCAACGACTATTATCACCATGATAAACCATGCTATTGGAGCAGCTG 1042
Query 1036 GAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATT 1095
|||||||||||||||||||||||||||| || || || || || || || ||||| ||||
Sbjct 1043 GAGTTGTTAGCCAGCAGTGCAAGACTGTCGTGGATCAATACGGGCAGACTATTTTAGATT 1102
Query 1096 TACTTTTGGCTGAGACTCAACCAAAGAAGATTTGCTCACAAATTGGTCTTTGCGCTTACG 1155
|||||||| ||||||| ||||||||||| || ||||| || |||||||| || ||| |
Sbjct 1103 TACTTTTGTCTGAGACCCAACCAAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTG 1162
Query 1156 ATGGCACCCATGGGGTCAGTATGGGGATTGAATCGGTGGTGGACAAGGAAAACAC-AAGA 1214
|||| |||| ||| ||||||||||| ||| | ||||||||||||||||||||| | || |
Sbjct 1163 ATGGTACCCGTGGTGTCAGTATGGGCATTCAGTCGGTGGTGGACAAGGAAAACGCCAA-A 1221
Query 1215 TCATCTAGTGGTCTTCGAGACGCGG-GTTG-TCCTGCATGTGAAATGGCGGTTGTGTGGA 1272
| |||| |||| || |||| || | || | || ||||||||| ||||| ||||||||||
Sbjct 1222 TTGTCTAATGGTGTTGGAGATGCTGCGT-GCTC-TGCATGTGAGATGGCAGTTGTGTGGA 1279
Query 1273 TACAGAGCCAATTGAGGCAGAACATGACTCAAGAGAGG-ATAGTGAACTACATTAATGAG 1331
| |||||||| |||||||||||||||||| |||| | | ||| |||||||| | || |||
Sbjct 1280 TCCAGAGCCAGTTGAGGCAGAACATGACTGAAGA-ACGCATATTGAACTACGTCAACGAG 1338
Query 1332 ATATGCGAGCGCATGCCTAGTCCAAATGG-AGAGTCTGCTGTTGACTGCT-CACAACTTT 1389
|||| || ||| | || || |||| ||| ||||||||| |||||||| | | ||||| |
Sbjct 1339 CTATGTGAACGCCTTCCCAGCCCAA-TGGGAGAGTCTGCAGTTGACTG-TGCTCAACTCT 1396
Query 1390 CTAA-AATGCCTACTGTTTCATTCACCATTGGAGGCAAAGTCTTTGATCTTGCTCCCGAA 1448
| || |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1397 C-AACAATGCCCACTGTTTCATTCACCATTGGAGGCAAAGTATTTGATCTTGCTCCAGAA 1455
Query 1449 GAGTACGTACTGAA-GATTGGGGAAGGACCAGTGGCACAATGTATTAGCGGCTTTACCGC 1507
||||| || ||||| | |||| || ||||| |||||||| || || || ||||||| ||
Sbjct 1456 GAGTATGTTCTGAAAG-TTGGTGAGGGACCTGTGGCACAGTGCATCAGTGGCTTTATTGC 1514
Query 1508 ACTTGATATCCCTCCACCTCGTGGACCTCTCTGGATACTTGG-AGATGTGTTTATGGGAA 1566
|| ||| || ||||||||||||||||||||||||| ||||| ||||||||| ||||| |
Sbjct 1515 TCTCGATGTCGCTCCACCTCGTGGACCTCTCTGGAT-CTTGGGAGATGTGTTCATGGGCA 1573
Query 1567 AATACCACACTGTCTTTGACTTCGGAAACGAGCAGGTTGGCTTCGCAGA 1615
|||||||||| || || |||||||| ||||| ||||| || || |||||
Sbjct 1574 AATACCACACCGTGTTCGACTTCGGTAACGAACAGGTCGGATTTGCAGA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5