BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62300.1
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475116 jgi|Araly1|475116|fgenesh2_kg.2__246__AT1G62300.1 2817 0.0
Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638 379 4e-104
Ahg327396 jgi|Araly1|327396|fgenesh1_pm.C_scaffold_6002616 279 4e-74
> Ahg475116 jgi|Araly1|475116|fgenesh2_kg.2__246__AT1G62300.1
Length=1958
Score = 2817 bits (1525), Expect = 0.0
Identities = 1808/1939 (93%), Gaps = 41/1939 (2%)
Strand=Plus/Plus
Query 1 ACAGACTCTTTCTTAA--TCTCTCTCTCTTTCAACCAAACCCCTAAACaaaaaaaaaaTA 58
|||||||||||||||| ||||||||||||| ||||||| ||| ||| || || || ||
Sbjct 1 ACAGACTCTTTCTTAATCTCTCTCTCTCTTTAAACCAAA-CCC-AAA-AACAATAATAT- 56
Query 59 CAttttctga--tctctctaaaaatc-tt--tctcc-ttcgttaatctcgtgatc-tc-t 110
|||||||||| |||||||||||||| || ||||| |||||||||||||||||| || |
Sbjct 57 CATTTTCTGATCTCTCTCTAAAAATCTTTAATCTCCTTTCGTTAATCTCGTGATCTTCTT 116
Query 111 -ttc-t-tt-ttctATATATGGACAGAGGATGGTCTGGTCTCACTCTTGATTCATCTTCT 166
||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CTTCTTCTTCTTCTATATATGGACAGAGGATGGTCTGGTCTCACTCTTGATTCATCTTCT 176
Query 167 CTTGATCTTTTAAACCCTAATCGTATTTCTCATAAGAATCACCGACGTTTCTCAAATCCT 226
|| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 177 CTCGATCTTTTAAACCCTAATCGTATTACTCATAACAATCACCGACGTTTCTCAAATCCT 236
Query 227 TTGGCGATGTCTAGAATTGACGAAGAAGATGATCAGAAGACGAGAATATCAACCAACGGT 286
||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 237 TTGACGATGTCTAGAATTGACGAAGATGATGATCAGAAGACGAAAATATCAACCAACGGT 296
Query 287 AGTGAATTTAGGTTTCCGGTGAGTCTCTCAGGTATTCGTGATCGTGAAGATGAAGATTTT 346
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 297 AGTGAATTTAGGTTTCCCGTGAGTCTCTCCGGTATTCGTGATCGTGAAGATGATGATTTT 356
Query 347 TCATCTGGCGTTGCTGGAGATAATGACCGTGAAGTTCCCGGCGAAGTGGATTTCTTCTCC 406
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 TCATCTGGCGTCGCCGGAGATAATGACCGTGAAGTTCCCGGCGAGGTGGATTTCTTCTCC 416
Query 407 GACAAGAAATCTAGGGTTTGTCGTGAAGACGACGAAGGATTTCGTGTGAAGAAGGAAGAA 466
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 417 GACAAGAAATCTAGGGTTTGTCGTGAAGACGACGACGGATTTCGTGTTAAGAAGGAAGAA 476
Query 467 CAAGATGATCGAACGGACGTAAATACCGGTTTGAATCTTCGAACAACTGGTAATACAAAG 526
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 477 CAAGATGATCGAACGGATGTAAACACCGGTTTGAATCTTCGAACAACGGGTAATACAAAG 536
Query 527 AGTGATGAGTCAATGATCGATGATGGAGAATCTTCCGAAATGGAAGATAAGCGTGCGAAA 586
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 537 AGTGATGAGTCAATGATCGACGATGGAGAATCTTCTGAAATGGAAGATAAGCGTGCGAAA 596
Query 587 AATGAGTTGGTGAAATTACAAGATGAGTTGAAGAAAATGACAATGGATAATCAAAAGCTT 646
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 597 AATGAGTTGGTTAAGTTACAAGATGAGTTGAAGAAAATGACAATGGACAATCAAAAGCTT 656
Query 647 AGAGAATTGCTTACACAAGTTAGCAACAGTTACACTTCACTTCAGATGCATCTTGTTTCA 706
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGAGAATTGCTTACACAAGTGAGCAACAGTTACACTTCACTTCAGATGCATCTTGTTTCA 716
Query 707 CTAATGCAGCAACAGCAACAACAGAACAATAAGGTAATAGAAGCTGCTGAGAAGCCTGAG 766
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 717 CTAATGCAGCAACAACAACAACAGAATAATAAGGTAATAGAGGCTGCTGAGAAACCTGAG 776
Query 767 GAGACGATAGTACCAAGGCAATTTATTGATTTAGGCCCTACGAGAGCAGTAGGTGAGGCC 826
|||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 777 GAGACGATAGTACCGAGGCAATTTATTGATTTAGGCCCTACAAGAGCAGTGGGCGAGGCC 836
Query 827 GAGGATGTGTCAAATTCTTCATCCGAAGATAGAACTCGTTCGGGGGGTTCTTCTGCAGCC 886
|||||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 837 GAGGATGTATCGAATTCTTCATCCGAAGATAGAACTCGTTCAGGCGGTTCTTCTGCGGCC 896
Query 887 GAGAGGCGTAGTAACGGGAAGAGACTTGGGCGTGAAGAAAGCCCCGAAACTGAGTCCAAC 946
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 897 GAGAGGCGTAGTAACGGGAAGAGACTTGGGCGTGAAGAAAGTCCCGAAACCGAGTCCAAC 956
Query 947 AAAATTCAGAAGGTGAATTCTACTACCCCGACGACATTTGATCAAACCGCTGAAGCTACG 1006
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 AAAATTCAGAAGGTGAATTCTACTACCCCGACGACATTTGATCAATCCGCTGAAGCTACG 1016
Query 1007 ATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCTCCGATGATAAGCGATGGA 1066
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1017 ATGAGGAAAGCCCGTGTCTCGGTTCGTGCCCGATCGGAAGCTCCCATGATAAGCGATGGA 1076
Query 1067 TGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATAT 1126
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1077 TGTCAATGGAGAAAGTATGGCCAGAAGATGGCTAAAGGGAATCCTTGTCCTCGGGCATAT 1136
Query 1127 TACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAGTTCAACGTTGCGCGGAA 1186
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1137 TACCGCTGCACAATGGCCACGGGTTGTCCCGTTCGCAAACAGGTTCAACGTTGTGCGGAA 1196
Query 1187 GACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCATCCGTTGCCGCCAGCC 1246
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GACAGATCAATTCTGATAACGACCTACGAGGGAAACCATAACCATCCGTTGCCGCCAGCC 1256
Query 1247 GCGGTAGCCATGGCTTCTACCACCACGGCGGCGGCTAACATGTTGCTATCCGGGTCAATG 1306
||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1257 GCGGTGGCCATGGCTTCTACCACCACGGCTGCGGCTAACATGTTGCTATCTGGATCAATG 1316
Query 1307 TCTAGTCACGACGGGATGATGAACCCTACAAATTTACTAGCTAGGGCTGTTCTTCCTTGC 1366
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TCTAGTCAAGATGGGATGATGAACCCTACAAATTTACTAGCTAGGGCTGTTCTTCCTTGC 1376
Query 1367 TCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCCAACCGTCACATTAGACCTC 1426
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1377 TCCACAAGCATGGCCACAATCTCAGCCTCCGCGCCGTTTCCCACCGTCACATTAGACCTC 1436
Query 1427 ACCCACTCACCTCCGCCTCCTAATGGTTCCAATCCTTCCTCTTCCGC-G--GCTACCAAC 1483
||||||||||| |||||| ||||||||||||| |||||||||||||| | || |||| |
Sbjct 1437 ACCCACTCACCACCGCCTTCTAATGGTTCCAACCCTTCCTCTTCCGCAGCCGCCACCAGC 1496
Query 1484 AACAACCACAACTCACTGA-TGCAGCGGCCGCAACAACAACAACAGCAAATGACGAACTT 1542
|||||| ||||| ||| | | || | ||||| | ||||||||||||||||| ||
Sbjct 1497 AACAACAACAAC-CACA-ACT-CATTGAT-GCAACGGCCGCAACAGCAAATGACGAATTT 1552
Query 1543 ACCTCCGGGAATGCTACCTCATGTAATAGGCCAGGCATTGTATAACCAATCCAAGTTCTC 1602
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1553 ACCCCCGGGTATGCTACCTCATGTAATAGGTCAAGCATTGTATAACCAATCCAAGTTCTC 1612
Query 1603 GGGGCTGCAGTTCTCTGGTGGCTCTCCCTCGACGGCAGCGTTTTCTCAGTCACACGCGGT 1662
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 AGGGCTGCAGTTCTCCGGTGGCTCTCCCTCGACGGCAGCGTTTTCTCAGTCACACGCGGT 1672
Query 1663 GGCTGATACAATAACGGCACTCACAGCTGACCCGAATTTCACGGCGGCTCTTGCAGCCGT 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GGCTGATACAATAACGGCACTCACAGCTGACCCGAATTTCACGGCGGCTCTTGCAGCCGT 1732
Query 1723 TATTTCTTCTATGATCAATGGTACGAACCACCACGACGGCGAAGGAAACAACAAAAATCA 1782
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 1733 TATTTCTTCTATGATCAATGGTTCGAACCACCACGACGGCCAAGGAAACAACAAAAGTCA 1792
Query 1783 ATAGAAAAATATTACAttttttttttGGGTATCTACAttttttttCCAACTGGGTTATAG 1842
|||||||||||||||| ||||||||| | | | ||||| | |||||||||||||
Sbjct 1793 ATAGAAAAATATTACAATTTTTTTTT---T-T-T---TTTTT---C-AACTGGGTTATAG 1840
Query 1843 GAAACAGAGAGTTTATTTCATTGATTCACATTTGTTCT---GTTTCGTACCAAAATCCCA 1899
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1841 GAAACAGAGAGTTTATTTCATTGATTCACATTTGTTCTTCTGTTTCGTACCAAAATTCCA 1900
Query 1900 GTAAATATACAAAAGCAAA 1918
||||||||||||||| |||
Sbjct 1901 GTAAATATACAAAAGAAAA 1919
> Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638
Length=1617
Score = 379 bits (205), Expect = 4e-104
Identities = 370/450 (82%), Gaps = 10/450 (2%)
Strand=Plus/Plus
Query 993 CCGCTGAAGCTACGATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCTCCGA 1052
|||| ||||| || ||| |||||||||||||||| |||||||||||||| |||||| |||
Sbjct 824 CCGCAGAAGCCACCATGCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCGA 883
Query 1053 TGATAAGCGATGGATGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTT 1112
|||||||||||||||||||||||||||| || || || || ||||| ||||| || || |
Sbjct 884 TGATAAGCGATGGATGTCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGT 943
Query 1113 GTCCGCGGGCATATTACCGCTGCACGATGGCCACG-GGCTGTCCCGTTCGCAAACAAGTT 1171
||||||| || ||||| |||||||| |||||| | || ||||| |||||||| |||||
Sbjct 944 GTCCGCGAGCTTATTATCGCTGCACAATGGCCG-GTGGATGTCCTGTTCGCAAGCAAGTG 1002
Query 1172 CAACGTTGCGCGGAAGACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCAT 1231
||||||||||| ||||||||||| ||||| || || |||||||| |||||||| ||||||
Sbjct 1003 CAACGTTGCGCAGAAGACAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCAT 1062
Query 1232 CCGTTGCCGCCAGCCGCGGTAGCCATGGCTTCTACCACCACGGCGGCGGCTAA-CATGTT 1290
|| | || |||||||| | |||||||| || || ||||| || || || || |||| |
Sbjct 1063 CCACTCCCACCAGCCGCTATGGCCATGGCCTCAACAACCACCGCAGCCGC-AAGCATGCT 1121
Query 1291 GCTATCCGGG-TCAATGTCTAGTCACGACGGGATGATGAACCCTACAAATTTACT-AGCT 1348
|| || ||| |||||||| || || ||||| | |||||||| ||||| | || ||||
Sbjct 1122 CCTCTC-GGGCTCAATGTCGAGCCAAGACGGTTTAATGAACCCAACAAACCT-CTTAGCT 1179
Query 1349 AGGGCTGTTCTT-CCTTGCTCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCC 1407
| || | ||| ||||||||| |||||||||| ||||||||||||||||| || || ||
Sbjct 1180 CGAGCCAT-CTTGCCTTGCTCCTCAAGCATGGCCACAATCTCAGCCTCCGCACCATTCCC 1238
Query 1408 AACCGTCACATTAGACCTCACCCACTCACC 1437
|||| ||||||| ||||||||| | |||||
Sbjct 1239 AACCATCACATTGGACCTCACCAATTCACC 1268
> Ahg327396 jgi|Araly1|327396|fgenesh1_pm.C_scaffold_6002616
Length=1590
Score = 279 bits (151), Expect = 4e-74
Identities = 350/446 (78%), Gaps = 13/446 (3%)
Strand=Plus/Plus
Query 998 GAAGCTACGATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCT-CCGATGAT 1056
||||| || ||| | ||||||||||| || |||||||| ||||| |||||| | ||| |
Sbjct 817 GAAGCCACCATGCGTAAAGCCCGTGTTTCGGTTCGTGCTCGATCCGAAGCTAAC-ATGCT 875
Query 1057 AAGCGATGGATGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCC 1116
||||||||||||||||||||||||||| || ||||| ||||| ||||| || || || ||
Sbjct 876 AAGCGATGGATGTCAATGGAGAAAATACGGGCAGAAAATGGCGAAAGGAAACCCGTGCCC 935
Query 1117 GCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAGTTCAACG 1176
|| || |||||||| ||||| |||||| || || ||||||||||| ||||| |||||
Sbjct 936 TCGAGCTTATTACCGTTGCACAATGGCCGTTGGATGCCCCGTTCGCAAGCAAGTGCAACG 995
Query 1177 TTGCGCGGAAGACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCATCCGTT 1236
|||||||||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 996 TTGCGCGGAAGACAGAACCATTCTCATAACAACCTACGAAGGAAACCATAACCATCCATT 1055
Query 1237 GCCGCCAGCCGCGGT-AGCCATGGCTTCTACCACCACGGCGGCGGCTAA-CATGTTGCTA 1294
|| || || || | | | |||||||| ||||| || || || || || |||| | ||
Sbjct 1056 ACCTCCCGCGGCTATGAAC-ATGGCTTCAACCACAACCGCAGCCGC-AAGCATGCTCCTC 1113
Query 1295 TCCGGGTC-A-A-TGTCTAGTCACGACGGGATGATGAACCCTACAAATTTACTAG-CTAG 1350
|| || || | | |||| | || || || | |||||||| |||||| | || | | |
Sbjct 1114 TCAGGCTCCACAATGTCGAACCAAGATGGTTTAATGAACCCAACAAATCT-CTTGGCCCG 1172
Query 1351 GGCTGTTCTT-CCTTGCTCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCCAA 1409
| | ||| || || ||| |||||||||| || ||||||||||| || || || ||||
Sbjct 1173 AACCAT-CTTACCGTGTTCCTCAAGCATGGCCACTATCTCAGCCTCTGCACCATTCCCAA 1231
Query 1410 CCGTCACATTAGACCTCACCCACTCA 1435
|| | |||||||||||||| |||||
Sbjct 1232 CCATTACATTAGACCTCACAGACTCA 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74809241180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5