BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62305.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475115 jgi|Araly1|475115|fgenesh2_kg.2__245__AT1G62305.1 2084 0.0
Ahg312224 jgi|Araly1|312224|fgenesh1_pm.C_scaffold_1001004 774 0.0
> Ahg475115 jgi|Araly1|475115|fgenesh2_kg.2__245__AT1G62305.1
Length=1422
Score = 2084 bits (1128), Expect = 0.0
Identities = 1299/1379 (94%), Gaps = 21/1379 (2%)
Strand=Plus/Plus
Query 96 ATTCTCCCGGAGTTCTGATGCAGATCGCCGG-AGATAAGT-AA--TC------TCGAG-T 144
||||||||||||||| ||||||||||||||| || ||||| || || ||||| |
Sbjct 52 ATTCTCCCGGAGTTCGGATGCAGATCGCCGGAAG-TAAGTAAATCTCGAATTTTCGAGTT 110
Query 145 TTACTAATGCCGCGGCTTCCGTCGTCTCGTCGCGGTGTCGTGTGGTTTCGATGGAAGATA 204
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 111 TTACTAATGCCGCGGCTTCCGTCGTCTCGTCGCGGCGTCGTGTGGTTTCGATGGAAGATA 170
Query 205 CTCATCACTATCTCCACCGCATTATGCATCCTCGCTCTCTTCTGTATCAACCGTCAGTCT 264
|| |||||| ||||| ||||||||||||||||||||||||||| | |||||||||| |||
Sbjct 171 CTTATCACTCTCTCCGCCGCATTATGCATCCTCGCTCTCTTCTCTTTCAACCGTCACTCT 230
Query 265 AATTCCACTGCGACGACGACGACACTGTCTTCGTCTCTCTCCGTCGCGAGATCTCGTATC 324
||| ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 231 AATCCCACT--G-CGACGACGACACTCTCTTCGTCTCTCTCCGTCGCGAGATCTCGTATC 287
Query 325 CCTCTCGTTAAATACTCCGGCGATCGTCCCAAACTCGCCTTCCTTTTCCTCGCTCGACGT 384
|| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 288 CCGCTCGTTAAATACTCCGGCGATCGTCCCAAACTCGCGTTCCTTTTTCTCGCTCGCCGT 347
Query 385 GATTTGCCACTTGATTTTCTCTGGGACAGATTCTTCAAGAGTGCAGATCAGAGGAATTTC 444
|||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct 348 GATTTGCCTCTTGATTTTCTCTGGGATAGATTCTTCAAGAATGCAGATCAGAGAAATTTC 407
Query 445 TCAATCTATGTACATTCAATACCTGGTTTCGTATTCGATGAATCATCCACAAGATCACAT 504
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 408 TCAATCTATATACATTCAATACCTGGTTTCGTATTCGATGAATCCTCCACAAGATCACAG 467
Query 505 TTCTTCTACAATCGTCAATTGAAGAATAGCATTGAGGTAGTTTGGGGAGAATCAAGCATG 564
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 468 TTCTTCTACAATCGCCAATTGAAGAATAGCATCCAGGTAGTTTGGGGAGAATCAAGCATG 527
Query 565 ATTGCAGCAGAAAGATTGTTGCTTGCATCTGCTTTGGAAGATCCTTCTAATCAAAGATTT 624
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 528 ATTGCAGCAGAAAGATTGTTGCTTGCATCTGCTTTGGAAGATCCTTCGAATCAAAGATTT 587
Query 625 GTTCTTTTGTCTGATAGCTGTGTTCCGTTATACGACTTTGGTTACATTTACAGATATCTA 684
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 588 GTTCTTTTGTCTGATAGCTGTGTTCCTTTATACGACTTTGGTTACATATACAGATATCTA 647
Query 685 GTTTCTTCACCAAAGAGTTTTGTAGACAGCTTCCTTGATAAAGATAATCGCTACACTATG 744
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 648 GTTTCTTCACCAAAGAGTTTTGTAGACAGCTTCCTTGATAAAGATAAACGCTACACCATG 707
Query 745 AAAATGTTTCCTGTTATACGGAAAGAAAAATGGCGAAAAGGATCTCAGTGGATATCATTG 804
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 708 AAAATGTTTCCTGTTATACGGAAAGAGAAATGGCGAAAAGGATCTCAGTGGATATCATTG 767
Query 805 ATCAGAAGCCATGCAGAGGTCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAA 864
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 768 ATCAGAAGCCATGCAGAGGTCATTGTTAATGATGATACAGTATTCCCAGTTTTTCAGAAA 827
Query 865 TTTTGCAAGCGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTTAAAAAGAGG 924
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 828 TTTTGCAAGCGATCTCTACCACTGGATCCCAGAAAGAATTGGCTATATCTTAAAAAGAGG 887
Query 925 CGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAATGCGTGGCTTG 984
||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 888 CGACACAACTGCATTCCTGATGAACACTATGTGCAAACTCTGCTAACAATGCGTGGCTTG 947
Query 985 GAAAATGAAATGGAACGGAGAACAGTGACATACACCACATGGAACCTATCAGCaaaaaaa 1044
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 948 GACAATGAAATGGAACGGAGAACAGTGACATACACGACATGGAACCTATCAGCAAAAAAA 1007
Query 1045 GCTGAAGCTAAATCTTGGCATCCTCTCACTTTCACATCTGACAATTGCGGACCAGAGGAA 1104
|||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||
Sbjct 1008 GCTGAAGCTAAATCTTGGCATCCTCTGACTTTCACATCTGACAATTCCGGGTCGGAGGAA 1067
Query 1105 ATAGAAGGAATAAAGAAAATCAACCATGTATATTATGAATCGGAGTATCGAACAGAATGG 1164
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 ATACAAGGAATAAAGAAAATCAACCATGTATATTATGAATCGGAGTATCGAACAGAATGG 1127
Query 1165 TGCAGAGCGAATTCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACTAGAGGA 1224
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TGCAGGGCGAATTCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACTAGAGGA 1187
Query 1225 GCCGCAATGCGTCTTTTGAGTGAAGGATTAATAGAATCCTCTATAGATACAACAACCTTT 1284
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 1188 GCCGCAATGCGTCTTTTGAGTGAAGGATTATTAGAATCATCAATAGATACAACAACCTTT 1247
Query 1285 TAGATACaaaaaaaaaaaGGTAAGCACAAAGGTTTTATAGAACTAAGAAAGAAGAAACCA 1344
||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1248 TAGATGCAAAGAAAA---GGTAAGCACAAAGGTTTTATACAACTAAGAAAGAAGAAACCA 1304
Query 1345 TGATTGACACCAGAAAAGAAAAAA-GTTAACTTAGAATATACAGGTGAAAGCATACA-GA 1402
||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| | ||
Sbjct 1305 AGATTGACGCCAGAAAAGAAAAAAAGTTAACTTAGAATATACAGGTGAA-GCATAAAAGA 1363
Query 1403 TAGTACATTAATCGATCATATGACAGTAGTTTGGTACAAACTATACATCCATCATGGAT 1461
|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1364 TAGTACATTAATCGATCATATGACAGCAGTTTAGTACAAACTATACATCCTTCATGGAT 1422
Score = 80.5 bits (43), Expect = 3e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 5 TCTCTCACATGTCAAATCCTTACGATTTCGATTTCTCCTGAAA 47
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCACATGTCAAATCCTTACGATTTCGATTTCTCCTGAAA 43
> Ahg312224 jgi|Araly1|312224|fgenesh1_pm.C_scaffold_1001004
Length=1152
Score = 774 bits (419), Expect = 0.0
Identities = 833/1027 (81%), Gaps = 52/1027 (5%)
Strand=Plus/Plus
Query 283 ACGACACTGTCTTCGTCTCTCTCCGTCGCGAGATCTC-GTATC-CCTC-TCGTTAAATAC 339
|||||| || | ||| | ||||||||||||||||||| | | | || | || ||||||
Sbjct 148 ACGACATTGCCGTCGCCGCTCTCCGTCGCGAGATCTCAG-A-CACCGCTTC-ACAAATAC 204
Query 340 TCCGGCGATCGTCCCAAACTCGCCTTCCTTTTCCTCGCTCGACGTGATTTGCCACTTGAT 399
||||| ||||||||||| ||||| ||||||||| | ||||| ||||| | |||||||||
Sbjct 205 TCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTAGCTCGCCGTGACCTCCCACTTGAT 264
Query 400 TTTCTCTGGGACAGATTCTTCAAGAGTGCAGATCAGAG-GAATTTCTCAATCTATGTACA 458
||| | ||||| |||||||||||| ||| ||||| | |||||||||||| ||| ||||
Sbjct 265 TTTATGTGGGATAGATTCTTCAAGGGTGTGGATCA-TGCGAATTTCTCAATTTATATACA 323
Query 459 TTCAATACCTGGTTTCGTATTCGATGAA-TCATCCACAAGATCACA-TTTCTTCTACAAT 516
|||| ||||||||||||| ||| ||||| || | ||| ||||||| | | |||||||||
Sbjct 324 TTCATTACCTGGTTTCGTGTTCAATGAAGACA-CTACACGATCACAGTAT-TTCTACAAT 381
Query 517 CGTCAATTGAAGAATAGCATTGAGGTAGTTTGGGGAGAATCAAGCATGATTGCAGCAGAA 576
|| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 382 CGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAATCAAGCATGATTGCAGCAGAA 441
Query 577 AGATTGTTGCTTGCATCTGCTTTGGAAGATC-CTTCTAATCAAAGATTTGTTCTTTTGTC 635
||||||||||||||||||||||| || |||| || | ||||||| |||||||||| | ||
Sbjct 442 AGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCC-AATCAAATATTTGTTCTTCTCTC 500
Query 636 TGATAGCTGTGTTCCGTTATACGACTTTGGTTACATTTACAGATATCT-AGTTTCTTCAC 694
||| || |||| ||||||||| |||||||| || || ||||||||||| | | |||||||
Sbjct 501 TGACAGATGTGCTCCGTTATATGACTTTGGCTATATATACAGATATCTTA-TCTCTTCAC 559
Query 695 CAAAGAGTTTTGTAGACAGCTTCCTTGATA--AA-GATA-ATCGCTACACTATGAAAATG 750
||| ||||||||| || || || ||| ||| || || | | || |||| | ||||||||
Sbjct 560 CAAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACA-CGGTACAGTGTGAAAATG 618
Query 751 TTTCCTGTTATACG-GAAAGAAAAATGGCGAAAAGGATCTCAGTGGATATCATT-GATCA 808
| |||||| |||| ||| || |||||||| |||||||| ||||||||| ||| |||||
Sbjct 619 TCTCCTGTCATACCTGAA-GAGAAATGGCGGAAAGGATCCCAGTGGATAG-ATTTGATCA 676
Query 809 GAAGCCATGCAGAGGTCATTGTTAATGATGATA-CTGTGTTCCCTGTTTTTCAGAAATTT 867
|||| ||||||||||||||||| ||||||| || | || ||||| |||||| || ||||
Sbjct 677 GAAGTCATGCAGAGGTCATTGTAAATGATGGTATC-GTATTCCCAGTTTTTAAGGAATTC 735
Query 868 TGCAAGCGATCTCTACCTCT-GGATCCCAGAA-AGA-ATTGGCTATATCTTAAAAAGAGG 924
|||||| ||| || |||| | || | ||| | || || || | | ||||||| |||
Sbjct 736 TGCAAGAGATGTCCACCTTTAGG-TACCA-ATGAGGCAT-GGTTGTTTCTTAAACAGAAA 792
Query 925 CGACACAACTGTATCCCTGATGAACACTACGTGCAAAC-TCTACTAACAATGCGTGG-CT 982
|| | |||||| ||||| ||||||||||| |||||||| | | || || |||| || ||
Sbjct 793 CGGCGCAACTGCATCCCCGATGAACACTATGTGCAAACAT-TGCTTACGATGCAAGGGCT 851
Query 983 TGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACATGGAACCTATCAGCaaaaa 1042
| | | |||||||||||| ||||||||||||||||| |||||||| | |||| | ||
Sbjct 852 AG-AGAGTGAAATGGAACGAAGAACAGTGACATACACTGCATGGAACGTTTCAGGTACAA 910
Query 1043 aaGCTGAAGCTAAATCTTGGCATCCTC-TCACTTTCACATCTG-ACAATTGCGGACCAGA 1100
|| |||||| |||||||||||||| | |||||||||||| || | || | ||| || ||
Sbjct 911 AATATGAAGCCAAATCTTGGCATCC-CGTCACTTTCACAT-TGGAAAACTCCGGTCCTGA 968
Query 1101 GGAAATAGAAGGAATAAAGAAAATCA-ACCATGTATATTATGAATCGGAGTATCGAACAG 1159
||||||| ||| |||||||||||| | ||||||| ||||| || || || | |||||| |
Sbjct 969 GGAAATAAAAGAAATAAAGAAAAT-AGACCATGTCTATTACGAGTCTGAATCTCGAACGG 1027
Query 1160 AATGGTGCAGAG-CGAATTCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACT 1218
||||||| | || || |||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 1028 AATGGTGTA-AGGCGGATTCAAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAGTTCACA 1086
Query 1219 AGAGGA-GCCGCAATGCGTCTTT-TGAGTGAAGGATTAATAGAATCCTCTATAGATACAA 1276
| | || || || ||||| | || ||||||||||| |||||| ||| || | | | |||
Sbjct 1087 A-ATGAAGCTGCTATGCG-CATTGTGAGTGAAGGACTAATAGGATCATCAACA-A-ACA- 1141
Query 1277 CAACCTT 1283
|||||||
Sbjct 1142 CAACCTT 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5