BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62310.1
Length=2687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907209 jgi|Araly1|907209|Al_scaffold_0002_290 3406 0.0
> Ahg907209 jgi|Araly1|907209|Al_scaffold_0002_290
Length=2796
Score = 3406 bits (1844), Expect = 0.0
Identities = 2404/2663 (90%), Gaps = 83/2663 (3%)
Strand=Plus/Plus
Query 81 TCTTATCAATATTCGTGGACGACTAGGAAGAAGAGAACTCTGAAACCATTCATGTCAAAA 140
||||||||||||||||||||||| ||||||||||||| |||||||||||| | |||||||
Sbjct 31 TCTTATCAATATTCGTGGACGACGAGGAAGAAGAGAAGTCTGAAACCATTTAAGTCAAAA 90
Query 141 GGTTCTAGC---CCTAGTAGTAGTA--G-TGATAGT-AG--GA-AACGGAAG-CTTT--C 187
|||| |||| ||||||||||| | ||| || || || | || ||| |||| |
Sbjct 91 GGTTTTAGCAGTAGTAGTAGTAGTAGGGAAGATGGTGAGACGAGAGCGAAAGTCTTTAAC 150
Query 188 --G--A--G-AGC--T-GA-A---GATAGCGATGATTCAGCGGTTAA-ACGGAATGCGAA 232
| | | ||| | || | || |||||||||||||||||||| | ||||| |||
Sbjct 151 GGGAAACGGAAGCATTCGAGAGGTGAGAGCGATGATTCAGCGGTTAATA-AGAATGGGAA 209
Query 233 ACGAAGGAGAAAGATATGCAAAGT---AG-AA-----GA--A-TATTATGAAGATGATGA 280
| |||||||||| ||||||||||| || || || | |||||||||||||||||
Sbjct 210 AAGAAGGAGAAATATATGCAAAGTAGAAGAAATCGGTGATGAGTATTATGAAGATGATGA 269
Query 281 TTGCATATTAAGTGATTGGGTTCAGAGGAATACTGCGAAAAGGATTGATAAGCGCAACGA 340
|||||||||| |||||||||||| ||||||| |||||||| ||| ||||||||||| ||
Sbjct 270 TTGCATATTAGGTGATTGGGTTCGGAGGAATGCTGCGAAACGGAGAGATAAGCGCAAAGA 329
Query 341 AGAAG-T-T-G--AAG-T-TA-T--GGTTAAGATAGAGTCAGGTGATGATTGCACAATAG 390
||||| | | | ||| | | | || || || || || |||||||||||||||||
Sbjct 330 AGAAGTTATGGTTAAGATAGAGTCAGGGGAATATTTAG-GAGATGATGATTGCACAATAG 388
Query 391 GTAAGTGGTTTTCTGATGTTAGTAGTAAAAGGAAAGATAAACGACAAGTAGAAGTTGATG 450
|||| |||||||||||||| ||||||||||||||| | || |||||||||||| |||| |
Sbjct 389 GTAATTGGTTTTCTGATGTCAGTAGTAAAAGGAAACACAAGCGACAAGTAGAACTTGAAG 448
Query 451 AAGATGAGGAATGGGAAGAAGAAGTTACACTGTGTTCTAAGATCAAGGCAACGTCGTCGC 510
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 449 AAGATGAGGAATGGGAAGAAGAAGTTAGACTGTGTTCTAAGATCAAGGCAACATCGTCAC 508
Query 511 GAAGCAGAACCCATAGTTTAAGTGCTAACAGTCCAGAAAATGTTACAGATGTTATTAGTC 570
|||||||||||| | ||||||| |||||||||| ||||||||||| |||| ||||||
Sbjct 509 GAAGCAGAACCCGCAATTTAAGTTCTAACAGTCCTGAAAATGTTACTGATG---TTAGTC 565
Query 571 CTTGTCGTTCACGGTCTCCAGCTTCTAATGTATCAGATTCCATTCAGAAAAAT--GACTG 628
||| |||||||||||||||||||||| |||||||||||||||||| ||||||| || |
Sbjct 566 CTTCTCGTTCACGGTCTCCAGCTTCTGATGTATCAGATTCCATTCTGAAAAATGGGA-T- 623
Query 629 CA-CCAGT-AGTAGAAA-ACAGAGTGGCCCAATTTGTCATCAGTGCTTGAAAGGGGAAAG 685
| | | | | | |||| | || ||||||||||||||||||||||||||||||| |||||
Sbjct 624 -ATCTAATGAATCGAAAGA-AG-GTGGCCCAATTTGTCATCAGTGCTTGAAAGGAGAAAG 680
Query 686 GATAACACTTCTCATTTGTAGTGAATGTGAGA-AGACAATGTTTTGTCTTCAATGTATAA 744
|||||||||||||||||| ||||||||||| | |||| |||| ||||||| |||||||||
Sbjct 681 GATAACACTTCTCATTTGCAGTGAATGTGA-ACAGACGATGTATTGTCTTAAATGTATAA 739
Query 745 GGAAATGGTATCCAAATCTATCTGAGGATGATGTTGTTGAGAAATGTCCTTTATGCCGTC 804
|||||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||| |
Sbjct 740 GGAAATGGTATCCACATCTATCTGAGGATGATGTTGTTCAAAAATGTCCTTTTTGCCGCC 799
Query 805 AAAATTGTAATTGTAGCAAATGCTTGCATTTGAATGGTTTAATTGAGACATCGAAGAGGG 864
||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 800 AAAATTGTAATTGCAGTAAATGCTTGCATTTGAACGGTTTAATCGAGACATCGAAGAGGG 859
Query 865 AACTCGCGAAATCTGAAAGACGTCATCATCTCCAGTATTTGATTACGTTGATGCTTCCTT 924
||||| |||| | ||||||||||| |||||||||||| ||| |||| |||||||||||||
Sbjct 860 AACTCACGAATTGTGAAAGACGTCGTCATCTCCAGTACTTGGTTACATTGATGCTTCCTT 919
Query 925 TTCTGAATAAGTTATCCATATTCCAGAAGCTAGAGATTGAATTTGAGGCAACTGTTCAAG 984
|||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||
Sbjct 920 TTCTGAATAAGTTATCCAAATTCCAGAAGCAAGAGATTGAGTTTGAGGCAAAGGTTCAAG 979
Query 985 GAAAACTGCCTTCTGAAGTTGAAATAACTGCGGCTATAAGCTACACTGATGAACGTGTAT 1044
|| ||||||||| |||||| ||||||||| | | |||| ||||||||||||||||||||
Sbjct 980 GATTACTGCCTTCCGAAGTTAAAATAACTGAGACAATAAACTACACTGATGAACGTGTAT 1039
Query 1045 ACTGTGATCATTGTGCAACTTCAATTGTTGACTTGCATCGAAGCTGTCCAAAGTGCTCTT 1104
||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1040 ACTGTGATCATTGTGCAACTTCAATTGAGGACTTGCACCGAAGCTGCCCAAAGTGCTCTT 1099
Query 1105 ATGAACTTTGTTTGAAGTGCTGTCAAGAGATTCGTGAAGGATCGCTTTCTGAACGCCCTG 1164
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 ATGAACTATGTTTAAAGTGCTGTCAAGAGATTCGTGAAGGATCGCTTTCTGAACGCCCTG 1159
Query 1165 AAATGAAGTTCCATTATGTTGATAGAGGACATCGATATATGCATGGTTTAGATGCTGCGG 1224
|||||||||| |||||||||||||||||| ||||||||||||| ||||||||| | ||||
Sbjct 1160 AAATGAAGTTACATTATGTTGATAGAGGATATCGATATATGCAGGGTTTAGATACCGCGG 1219
Query 1225 AACCGA-GCTTGTCTTCCACTTTTGAAGACGAAGAAGCTAACCCATCTGACGCTAAGTGG 1283
|||| | ||| |||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1220 AACC-AGGCTCCTCTTCCACTTCTGAAGACGAAGAAGCTAACCCATCCGACGCTAAGTGG 1278
Query 1284 AGCCTTGGTGAAAATGGAAGCATCACTTGTGCACCAGAAAAGCTAGGTGGTTGTGGTGAA 1343
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1279 AGCCTTGGTGATAATGGAAGCATCACTTGTGCACCAGAAAATCTAGGTGGTTGTGGTGAT 1338
Query 1344 CG-GATGCTAGAGCTTAGGCGGATCCTACCACTCACGTGGATGTCAGATTTAGAGCACAA 1402
| | |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1339 TGTG-TGCTAGAGCTTAAGCGGATCCTACCACTGACGTGGATGTCAGACTTAGAGCACAA 1397
Query 1403 AGCAGAGACTTTCTTATCATCATACAATATAAGCCCTAGAATGTTGAACTGTAGGTGTTC 1462
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1398 AGCAGAGACTTTCTTGTCATCATACAATATTAGCCCTAGAATGTTGAACTGTAGGTGTTC 1457
Query 1463 TTCTTTGGAGACAGAGCTGACAAGGAAATCAGCTTCGAGGACAACATCAAGTGACAACTA 1522
|||||| ||||| ||| ||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 1458 TTCTTTAGAGACCGAGATGACAAGGAAAGCAGCTTCGAGGACAAAATCGAGTGACAACTA 1517
Query 1523 CCTTTTCTGTCCTGAATCTCTCGGTGTCTTGAAGGAAGAAGAGCTTCTTCATTTTCAAGA 1582
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1518 CCTTTTCTGTCCTGAATCTCTTGGTGTCTTGAAGGAAGAAGGGCTTCTTCATTTTCAAGA 1577
Query 1583 GCATTGGGCAAAAGGCGAACCAGTAATCGTTAGGAACGCTCTTGACAACACACCTGGTTT 1642
|||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 1578 GCATTGGGCAAACGGCGAACCAGTAATCGTCAGGAACGCCCTTGATAACACACCTGGTTT 1637
Query 1643 AAGCTGGGAGCCGATGGTTATGTGGCGGGCTTTATGCGAAAATGTGAATTCAACATCAAG 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1638 AAGCTGGGAGCCGATGGTTATGTGGCGGGCTTTATGCGAAAATGTGAATTCAACAGCAAG 1697
Query 1703 CTCTGAGATGTCCCAAGTCAAAGCAATTGATTGCTTAGCTAATTGTGAGGTGGAGATCAA 1762
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 CTCTCAGATGTCCCAAGTCAAAGCAATTGATTGCTTAGCTAATTGTGAGGTGGAGATCAA 1757
Query 1763 TACTCGTCAGTTCTTTGAAGGTTATAGCAAAGGAAGAACATATGAAAATTTCTGGCCTGA 1822
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1758 TACTCGTCATTTCTTTGAAGGTTATAGCAAAGGAAGAACATATGAAAACTTCTGGCCTGA 1817
Query 1823 GATGTTGAAGCTTAAGGACTGGCCTCCTTCTGATAAGTTTGAAGATCTTCTACCTCGTCA 1882
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1818 GATGTTGAAGCTGAAGGACTGGCCTCCTTCTGATAAGTTTGAAGATCTTTTACCTCGTCA 1877
Query 1883 CTGTGATGAGTTCATATCCGCGTTACCTTTCCAGGAATATAGTGATCCTAGAACTGGAAT 1942
|||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||
Sbjct 1878 TTGTGATGAGTTCATATCCGCGTTACCTTTCCAAGAATATAGCAATCCTAGAACCGGAAT 1937
Query 1943 TCTTAACATTGCAACAAAGCTTCCTGAAGGATTTATCAAACCAGATTTAGGTCCAAAAAC 2002
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1938 TCTTAACATTGCAACAAAGCTTCCTGAAGGATTTATCAAACCAGATTTGGGTCCCAAAAC 1997
Query 2003 TTACATCGCCTATGGGATTCCAGATGAGCTTGGTAGAGGCGATTCCGTGACTAAGCTTCA 2062
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1998 TTACATTGCTTATGGGATTCCAGATGAGCTTGGTAGAGGCGATTCTGTGACTAAGCTTCA 2057
Query 2063 CTGCGATATGTCAGACGCGGTGAATATTCTAACGCATACGGCCGAAGTGACCCTAAGTCA 2122
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2058 TTGCGATATGTCAGACGCGGTGAATATTCTGACGCATACGGCCGAAGTAACCCTAAGTCA 2117
Query 2123 AGAACAAATATCCTCAGTCAAAGCACTGAAACAGAAACACAAGTTACAGAATAAGGTCGA 2182
|||||||||||| ||||||||||||||||||||||||||||| |||||| | | | ||
Sbjct 2118 AGAACAAATATCAGCAGTCAAAGCACTGAAACAGAAACACAAGCAACAGAACATGTTTGA 2177
Query 2183 TAAACAGAGTACTGAAGACTGTAACGAAAAGgaagaagaagaagaagaagaaTTGAACAT 2242
||||||||| |||||| ||| | | | || | || | |||||||||||||||||
Sbjct 2178 TAAACAGAGCACTGAATTCTG---C-A---GCAA-A-GA-G--GAAGAAGAATTGAACAT 2225
Query 2243 GCCAGAGATTTCGAGCAATGAAAATGAAGAAACGGGCAGTGCTCTTTGGGACATATTTAG 2302
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2226 GCCAGAGATTTTGAGCAATGAAAATGACGAAACGGGCAGTGCTCTTTGGGACATATTTAG 2285
Query 2303 GAGAGAAGACGTTCCCAAGTTAGAAGAGTATCTAAGAAAGCATTGCAAAGAATTTAGACA 2362
|||||| || ||||| || |||||| |||||||||||||||||||| |||||||||||||
Sbjct 2286 GAGAGATGATGTTCCTAAATTAGAAAAGTATCTAAGAAAGCATTGCCAAGAATTTAGACA 2345
Query 2363 CACTTATTGTAGTCCAGTTACAAAGGTTTATCATCCGATACATGACCAATCATGCTATTT 2422
||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2346 TACTTATTGTTGTCCAGTTACAAAGGTTTGTCATCCGATACATGACCAAACATGCTATTT 2405
Query 2423 AACCTTAGAGCACAAAAGAAAACTCAAGGCGGAATATGGGATCGAGCCATGGACATTTGT 2482
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2406 AACCTTGGAGCACAAAAGAAAACTCAAGGCAGAATTTGGGATCGAGCCATGGACATTTGT 2465
Query 2483 GCAAAAGCTAGGTGAAGCGGTGTTTATTCCCGCGGGTTGTCCTCATCAAGTTCGGAATCT 2542
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2466 GCAAAAGCTAGGTGAAGCAGTGTTTATTCCTGCGGGTTGTCCTCATCAAGTTCGGAATCT 2525
Query 2543 AAAGTCGTGCACAAAAGTCGCAGTTGACTTTGTGTCACCAGAGAACATCCATGAGTGTCT 2602
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2526 AAAGTCGTGCACAAAAGTGGCAGTTGACTTTGTGTCACCAGAGAACATCCATGAGTGTCT 2585
Query 2603 GCGTTTGACCGAAGAGTTTCGCCAACTTCCCAAAAACCACAAGGCCAGAGAGGACAAACT 2662
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2586 GCGTCTGACCGAAGAGTTTCGCCAACTTCCCAAGAACCACAAGGCCAGAGAGGACAAACT 2645
Query 2663 CGAGGCAAGTCTTTTATCTCTTT 2685
||||||||||||||||||||||
Sbjct 2646 TGAGGCAAGTCTTTTATCTCTTT 2668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101358141945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5