BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62320.1
Length=2310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338150 jgi|Araly1|338150|fgenesh1_pg.C_scaffold_2000249 3554 0.0
Ahg312226 jgi|Araly1|312226|fgenesh1_pm.C_scaffold_1001006 1620 0.0
Ahg342312 jgi|Araly1|342312|fgenesh1_pg.C_scaffold_3002075 401 9e-111
> Ahg338150 jgi|Araly1|338150|fgenesh1_pg.C_scaffold_2000249
Length=2337
Score = 3554 bits (1924), Expect = 0.0
Identities = 2207/2340 (94%), Gaps = 33/2340 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACATTAGCAGATATTGGACTAGCAGCAGCGATTAATATTCTAAGTGCATTGATA 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGACATTAGCAGATATTGGAGTAGCAGCAGCGATTAATATTCTAAGTGCTTTGATA 60
Query 61 TTTCTATTGCTATTTGCAATCTTGAGGATTCAACCATTCAATGATAGGGTTTATTTCCCT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTTCTATTGCTATTTGCAATCTTGAGGATCCAACCATTCAATGATAGGGTTTATTTCCCT 120
Query 121 AAATGGTACTTAAAAGGTGTTAGAAGCAGCCCTGTGAATTCGGGTGCTTTCGTTAGCAAG 180
||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 AAATGGTACCTAAAAGGTGTTAGAAGCAGCCCGGTGAATTCGGGTGCTTTCGTGAGCAAG 180
Query 181 ATTATGAATTTGGACTTTCGATCATACGTTCGGTTTTTAAACTGGATGCCTGATGCTCTT 240
||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||
Sbjct 181 ATTATGAATTTGGACTTTCGATCATACGTTCGGTTTTTAAATTGGATGCCCGCCGCT-TT 239
Query 241 -AAGATGCCAGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGCTGTTTACTTGAG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAGATGCCAGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGCTGTTTACTTGAG 299
Query 300 GATTTACTTGATTGGGCTTAAGATCTTTGGT-CCGATTGCATTACTTTCATGGTCAATTT 358
|||||||||||| ||||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 300 GATTTACTTGATAGGGCTTAAGATCTTT-GTCCCGATCGCATTACTTTCATGGTCGATAC 358
Query 359 TAGTACCTGTAAATTGGACAAGTGATGGATTGCAGCTAGCAAAACTTCGTAATGTAACAT 418
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 TAGTACCTGTCAATTGGACCAGTGATGGATTGCAGCTAGCAAAACTTCGTAATGTGACAT 418
Query 419 CGAGTAATATCGATAAGCTTTCGATTTCGAATGTCGAACGTGGATCAGACAGGTTTTGGG 478
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 CAAGTAATATCGATAAGCTTTCGATTTCAAATGTCGAACGTGGATCAGACAGGTTTTGGG 478
Query 479 CACATCTTGTGATGGCTTATGCATTCACATTTTGGACTTGCTATGTACTAATGAAGGAAT 538
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 CACATCTTGTGATGGCTTATGCATTCACATTTTGGACTTGCTATGTTCTAATGAAGGAAT 538
Query 539 ATGAGAAAATTGCTGCAATGCGGTTATCTTTTCTCCAATCAGAGAAGCGACGTGCTGATC 598
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 539 ATGAGAAAATTGCTGCAATGCGGTTATCTTTTCTCCAATCCGAGAAGCGACGCGCTGATC 598
Query 599 AATTCACTGTTCTGGTTAGGAACGTACCACCGGACTCAGACGAGTCGATTAGCGAAAACG 658
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 599 AATTCACTGTTCTGGTTAGGAACGTACCACCGGACTCAGACGAGTCAATTAGGGAAAACG 658
Query 659 TGCAGCATTTCTTTCTTGTTAACCACCCAGACCATTATCTTACACATCAGGTGGTGTACA 718
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TGCAGCATTTCTTTCTTGTTAACCACCCGGACCATTATCTTACACATCAGGTGGTGTACA 718
Query 719 ATGCAAATGAATTGGCTAAATTGGTAGAAGACAAGAAGAAAATGCAGAATTGGTTAGATT 778
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 719 ATGCAAATGAATTGGCTAAACTGGTAGAAGAGAAGAAGAAAATGCAGAATTGGTTAGATT 778
Query 779 ACTACCAGTTGAAGTATACAAGAAACAAGGAACAACGGCCAC-GG---A--TGGGATTTC 832
||||||| ||||||||| ||||||||||||||||| |||||| || | |||||||||
Sbjct 779 ACTACCATTTGAAGTATTCAAGAAACAAGGAACAAAGGCCACGGGTAAAGTTGGGATTTC 838
Query 833 TCGGGCTATGGGGCAAA-AAAGTAGATGCAATGGATCATTATACAGCAGAGATCGAGAAA 891
||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 839 TCGGGCTATGGGG-AAAGAAAGTAGATGCAATGGATCATTACACAGCTGAGATCGAGAAA 897
Query 892 CTTAGCGAGCAAATAATGGAAGAAAGGAAGAGGATAAAGAAAGATGACAAAAGTGTAATG 951
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 CTAAGCGAGCAAATAATGGAAGAAAGGAAGAGAATAAAGAAAGATGACAAAAGTGTAATG 957
Query 952 CAAGCAGCTTTTGTGTCTTTTAAAACGCGTTGGGGCGCTGCGGTCTGCGCGCAGACACAA 1011
| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 958 CCAGCAGCTTTCGTGTCTTTTAAAACGCGTTGGGGCGCTGCAGTCTGCGCACAGACACAA 1017
Query 1012 CAGACGAAGAATCCAACTGAATGGTTAACCGAATGGGCTCCTGAGGCAAGAGAAATGTAC 1071
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1018 CAGACGAAGAATCCAACGGAATGGTTAACCGAATGGGCTCCCGAGGCAAGAGAAATGTAC 1077
Query 1072 TGGCCAAATCTCGCAATGCCTTACGTATCTCTCACTGTAAGGAGATTTGTAATGCACATC 1131
||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1078 TGGGAAAATCTCGCAATGCCTTACGCATCTCTCACTTTAAGGAGATTTGTAATGCACATT 1137
Query 1132 GCCTTCTTCTTCCTCACGTTCTTTTTCATCATCCCAATCGCATTTGTGCAATCCTTAGCG 1191
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCCTTCTTCTTCCTCACATTCTTTTTCATCATCCCAATCGCATTTGTGCAATCCTTAGCG 1197
Query 1192 AGTATTGAAGGTATCGAGAAATCCGCTCCGTTCCTCAGTCCCATTGTCAAAAACAAGTTA 1251
||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1198 AGTATTGAAGGTATCCAGAAATCCGCTCCGTTCCTCAGTCCCATTGTCGAAAAGAAGTTT 1257
Query 1252 ATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTC 1311
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1258 ATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTTTTGAAGCTCTTTTTGATATTT 1317
Query 1312 CTGCCAACAATATTGATGATCATGTCGAAATTCGAAGGGTTTATTTCAATATCATCGTTA 1371
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTACCAACAATTTTGATGATCATGTCGAAATTCGAAGGGTTTATTTCAATATCATCGTTA 1377
Query 1372 GAGAGAAGAGCGGCTTTTCGATACTATATTTTCAACCTTGTGAATGTTTTCCTCGGTAGC 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAGAGAAGAGCGGCTTTTCGATACTATATTTTCAACCTTGTGAATGTTTTCCTCGGTAGC 1437
Query 1432 GTAATCACTGGATCTGCTTTTGAACAGCTCGATTCTTTTCTTAAACAATCCGCAAACGAC 1491
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ATAATCACTGGATCTGCATTTGAACAGCTCGATTCTTTTCTTAAACAATCCGCAAACGAC 1497
Query 1492 ATTCCGCGGACAGTTGGAGTCGCGATACCGATAAAAGCAACGTTCTTTATAACGTATATA 1551
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 1498 ATTCCGCGGACAGTTGGAGTAGCGATACCGATAAAAGCAACCTTCTTTATAACATATATA 1557
Query 1552 ATGGTAGACGGTTGGGCGGGTGTGGCGGGAGAAATCTTTAGGCTGAAACCATTAGTCATT 1611
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1558 ATGGTAGACGGTTGGGCGGGTGTGGCCGGAGAAATTTTTAGGCTGAAACCATTAGTCATT 1617
Query 1612 TTCCATTTAAAGAACTTCTTCTTTGTGAAAACTGAAAAGGATAGAGAAGAAGCTATGGAT 1671
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1618 TTCCATTTAAAGAACTTCTTCTTTGTGAAAACTGAAAAGGACAGAGAAGAAGCTATGGAT 1677
Query 1672 CCGGGACAGATTGATTTCTACGCTACCGAGCCTCGGATTCAACTATACTTCCTCCTTGGC 1731
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1678 CCGGGACAGATCGATTTCTACGCTACAGAGCCTCGGATTCAACTATATTTCCTCCTTGGC 1737
Query 1732 CTTGTCTACGCTCCTGTCACTCCTGTTCTTCTTCCTTTCATCATCTTCTTCTTTGGTTTC 1791
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1738 CTTGTCTACGCTCCGGTCACGCCTGTTCTACTTCCTTTCATCATCTTCTTCTTCGGTTTC 1797
Query 1792 GCCTACCTCGTCTTCCGTCATCAGA--A-----GTAT--GA---GA-GT--G----CG-G 1831
||||||||||||||||||||||||| | || | || || || | || |
Sbjct 1798 GCCTACCTCGTCTTCCGTCATCAGATCATAAATGTGTACGATCAGAAGTATGAGAGCGCG 1857
Query 1832 G-TGCATTCTGGCCAGACGTTCATGGACGTATAATATCGGCATTGATCATCTCACAAATC 1890
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GCTGCATTCTGGCCTGACGTTCATGGACGTATAATATCGGCATTGATCATCTCACAAATT 1917
Query 1891 CTTTTGTTGGGATTAATGAGCACGAAAGGAAAAGTTCAGTCCACACCTTTCCTCCTCGTT 1950
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1918 CTTTTGTTGGGATTAATGAGCACGAAAGGAAAAGTTCAGTCCACGCCTTTCCTCCTCGTT 1977
Query 1951 CTAGCGATTCTCACCTTCGGTTTTCATCGGTTTTGCAAAGGCCGGTACGAATCGGCATTC 2010
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1978 CTAGCGATTGTCACCTTCGGTTTTCATCGGTTTTGCAAAGGCCGGTACGAGTCCGCATTC 2037
Query 2011 GTCATTAACCCGTTGCAGGAAGCTATGATTAAGGATACATTGGAACGAGCAAGAGAACCA 2070
||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2038 GTCATTAACCCTTTGCAGGAAGCTATGATTAAGGATACATTGGAAAGAGCAAAAGAACCA 2097
Query 2071 AACTTGAATCTTAAAGGGTTTCTTCAGAATGCATATGTTCATCCTGTTTTTAAAGACGAA 2130
||||| |||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||
Sbjct 2098 AACTTAAATCTTAAAGGGTTTCTTCAAAATGCATATATTCATCCGGTTTTCAAAGACGAA 2157
Query 2131 GAAGATTCAGATGAAGAGGGACTAATCGAGGATTCAGATGACGAAGATTGTGTAGTTGTA 2190
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2158 GAAGATGAAGATGAAGAGGGACTAATCGAGGATTCAGATGATGAAGATTGTGTAGTTGTA 2217
Query 2191 CAAACCAAACGTCAAAGATCACGGAGAACCACCGTTGCGAGCAGCAATGCGAGCCGTGGC 2250
| ||||| |||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 2218 CCAACCACACGTCAAAGATCCCGGAGAACCACTGTGGCGAGCAGCAATGCGAGCCGTGGT 2277
Query 2251 TCGTCACAATCAACGCCTTTTAATCAACTTGATTTGGGTAAGGGGAAACCGGAGACTTGA 2310
||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 2278 TCGTCACAATCGCCGCCTTTTAATCAACTTGATACGGGTAAGGGAAAACCGGAGCCTTGA 2337
> Ahg312226 jgi|Araly1|312226|fgenesh1_pm.C_scaffold_1001006
Length=2322
Score = 1620 bits (877), Expect = 0.0
Identities = 1774/2196 (81%), Gaps = 105/2196 (5%)
Strand=Plus/Plus
Query 1 ATGGCGACATTAGCAGATATTGGACTAGCAGCAGCGATTAATATTCTAAGTGCATTGATA 60
||||| ||| ||| |||||||||| |||||||| | || || || || | |||| | ||
Sbjct 1 ATGGCAACACTAGAAGATATTGGAGTAGCAGCAACAATCAACATACTCACTGCAATCATC 60
Query 61 TTTC-TATTGCTATTTGCAATCTTGAGGATTCAACCATTCAATGATAGGGTTTATTTCCC 119
|| | | | || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TTCCTTCTGGC-ATTTGCAATCTTGAGGATTCAACCATTCAACGATAGGGTTTATTTCCC 119
Query 120 TAAATGGTA-CTTAAAAGGTGTTAGAAGCAGCCCTGTGAATTCGGGTGCT-TTCGTTAGC 177
||||||||| |||||| ||| | |||||||||||| || |||| |||||| || || |||
Sbjct 120 TAAATGGTATCTTAAA-GGTATAAGAAGCAGCCCTTTGCATTCAGGTGCTCTT-GTCAGC 177
Query 178 AAGATTATGAATTTGGACTTTCGATCATACGTTCGGTTTTTAAACTGGATGCCTGATGCT 237
||| || | ||| | |||| | || ||| | ||||| || ||||||||||||| |||
Sbjct 178 AAGTTTGTCAATGTCAACTTAGGCTCTTACCTCCGGTTCTTGAACTGGATGCCTGCGGCT 237
Query 238 CTTAAGATGCCAGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGCTGTTTACTTG 297
|| || ||||| ||||| || |||||||| |||||||| |||||||||||||| ||||||
Sbjct 238 CTAAACATGCCCGAGCCCGAGCTTATTGACCATGCTGGATTGGATTCTGCTGTCTACTTG 297
Query 298 AGGATTTACTTGATTGGGCTTAAGATCTTTGGTCC-GATTGCATTACTTTCATGGTCAAT 356
|||||||||||||| |||||||||||||||| ||| ||| || |||||| | ||||| ||
Sbjct 298 AGGATTTACTTGATAGGGCTTAAGATCTTTG-TCCCGATAGCTTTACTTGCGTGGTCGAT 356
Query 357 T-TTAGTACCTGTAAATTGGACAAGTGATGGATTGCAGCTAGCAAAACTTCGTAATGTAA 415
| || |||||||| |||||||| ||||||||| |||| |||||||| |||||||||||||
Sbjct 357 TCTT-GTACCTGTCAATTGGACTAGTGATGGACTGCAACTAGCAAAGCTTCGTAATGTAA 415
Query 416 CATCGAGTAATATCGATAAGCTT-TCGATTTCGAATGTCGAACGTGGATCAGACAG---G 471
|||| ||| | || |||||| || ||||| || ||| ||||||||||||||||||| |
Sbjct 416 CATCTAGTGACATTGATAAG-TTATCGATCTCAAATATCGAACGTGGATCAGACAGTTTG 474
Query 472 T--TTT----GG----GCAC--ATCTTGTGATGGCTTATGCATTCACATTTTGGACTTGC 519
| ||| || | || | |||||||||||||||||||||||||| |||||||||
Sbjct 475 TACTTTTTAAGGTTTTGGACTCACCTTGTGATGGCTTATGCATTCACATTCTGGACTTGC 534
Query 520 TATGTACTAATGAAGGAATATGAGAAAATTGCTGCAATGCGGTTATCTTTTCTCCA-ATC 578
||||| |||||||| || ||||||||| | ||||| ||||| || | |||||||| | |
Sbjct 535 TATGTTCTAATGAAAGAGTATGAGAAAGTAGCTGCTATGCGTTTGGCATTTCTCCAGAAC 594
Query 579 AGAG-AAGCGACGTGCTGATCAATTCACTGTTCTGGTTAGGAACGTACCA-CCGGACTCA 636
||| || || || ||||||| ||||| ||| ||||||||||||||||| ||| || ||
Sbjct 595 -GAGCAA-CGGCGCCCTGATCAGTTCACGGTTTTGGTTAGGAACGTACCAGCCG-ACCCA 651
Query 637 GACGAGTCGATTAGCGAAAACGTGCAGCATTTCTTTCTTGTTAACCACCCAGACCATTAT 696
|||||||| ||||| || | ||| | |||||||| || |||||||| || |||||||||
Sbjct 652 GACGAGTCCATTAGTGAGAGTGTGGAACATTTCTTCCTAGTTAACCATCCGGACCATTAT 711
Query 697 CTTACACATCAGGTGGTGTACAATGCAAATGAATTGGCTAA-ATTGGTAGAAG-ACAAGA 754
||||| |||||||| |||||||||||||| || ||||| | ||| ||||| | | ||||
Sbjct 712 CTTACGCATCAGGTTGTGTACAATGCAAACGATTTGGC-AGCATTAGTAGA-GCAGAAGA 769
Query 755 AGAAAATGCAGAATTGG-TTAGATTACTACCAGTTGAAGTATACAAGAAACAAGGAACA- 812
||| | ||||| ||| || || || ||||| |||||||||||||| ||| |||||||
Sbjct 770 AGAGCACACAGAACTGGCTT-GACTATTACCAATTGAAGTATACAAGGAACCAGGAACAT 828
Query 813 ACGGCCACGGAT---G--GGATTT-CTCGGGCTATGGGG-CAAAAAAGTAGATGCAATGG 865
| | ||| |||| | || ||| |||||||||||||| || ||| || || ||||| |
Sbjct 829 AAG-CCAAGGATAAAGACGGGTTTTCTCGGGCTATGGGGACAGAAA-GTTGACGCAATCG 886
Query 866 ATCATTATACAGCAGAGATCGAGAAACTTAG-CGAGCAAATAATGGAAGAAAGGAAGAGG 924
||||||||| ||| || ||||||||| ||| ||||||| | | | |||| || ||
Sbjct 887 ATCATTATATAGCTGAAATCGAGAAA-TTAAACGAGCAAG-A--G-AGGAAA--AA-AG- 937
Query 925 ATAAAGAAAGATGACAAAAGTGTAATGCAAGCAGCTTTTGTGTCTTTTAAAACGCGTTGG 984
||||||||||||| | ||||||||||| |||||||||||| || |||||||| || |||
Sbjct 938 -TAAAGAAAGATGATACAAGTGTAATGCCAGCAGCTTTTGTCTCGTTTAAAACACGGTGG 996
Query 985 GGCGCTGCGGTCTGCGCGCAGACACAACAGACGAA-GAATCCAACTGAATGGTTAACCGA 1043
|| ||||| || || || ||||| |||||| ||| || |||||| || |||||||| ||
Sbjct 997 GGTGCTGCTGTTTGTGCACAGACTCAACAGTCGAGTGA-TCCAACCGAGTGGTTAACTGA 1055
Query 1044 ATGGGCTCCTGAGGCAAGAGAAATGTACTGGCCAAATCTCGCAATGCCTTACGTATCTCT 1103
||||||||| |||||| | ||| ||| ||| | || |||||||| ||||| || ||| |
Sbjct 1056 ATGGGCTCCCGAGGCACGGGAAGTGTTTTGGTCGAACCTCGCAATACCTTATGTCTCTTT 1115
Query 1104 CACTGTAAGGAGATTTGTAATGCACATCGCCTTCTTCTTCCTCACGTTCTTTTTCATCAT 1163
|| ||||| ||| || ||||||| || || |||||||||||||| ||||| ||||| ||
Sbjct 1116 AACAGTAAGAAGACTTATAATGCATATTGCATTCTTCTTCCTCACCTTCTTCTTCATGAT 1175
Query 1164 CCCAATCGCATTTGTGCAATCC-TTAGCGAGTATTGAAGGTATCGAGAAATCCGCTCCGT 1222
||||| || ||||| ||| || || || || || ||||| || |||||||||||||| |
Sbjct 1176 TCCAATAGCCTTTGTTCAAACCCTT-GCAAGCATCGAAGGCATTGAGAAATCCGCTCCTT 1234
Query 1223 TCCTCAG-TCCCATTGTCAAAAACAAG-TTAATGAAATCA-TTGATCCAAGGTTTTCTTC 1279
|||| | ||| || || | || ||| || | ||||| || ||||||||||||||||
Sbjct 1235 TCCTTAAATCC-ATCATCGAGAAGAAGCTTGTT-AAATCGGTT-ATCCAAGGTTTTCTTC 1291
Query 1280 CCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAA-CAATATTGATGATCATGTCG 1338
| ||||| || || ||||||||| | ||||| ||||||| || | |||||| | ||||||
Sbjct 1292 CGGGTATCGTGTTAAAGCTCTTTCTAATATTTCTGCCAAGCATT-TTGATGGTAATGTCG 1350
Query 1339 AAATTCGAAGGGTTTATTTCAATATCATCGTTAGAGAGAAGAGCGGCTTTTCGATACTAT 1398
|| |||||||||||| | || ||||||| |||||||||||||| |||| |||||| |||
Sbjct 1351 AAGTTCGAAGGGTTTGTATCGTTATCATCATTAGAGAGAAGAGCAGCTTCTCGATATTAT 1410
Query 1399 AT-TTTCAACCTTGTGAATGTTTTCCTCGGTAGCGTAATCACTGGATCTGCTTTTGAACA 1457
|| ||| ||||| || ||||| |||||||| ||| ||||| | || ||||| ||||||||
Sbjct 1411 ATCTTT-AACCTCGTCAATGTCTTCCTCGGAAGCATAATCGCGGGCTCTGCATTTGAACA 1469
Query 1458 GCTCGATTCTTTTCTTAAACAATCCGCAAACGACATTCCGCGGACAGTTGGAGTCGCGAT 1517
|||||| ||||| || |||||||| ||||| || ||||| ||| |||||||| |||||
Sbjct 1470 GCTCGAGTCTTTCCTCAAACAATCTGCAAAGGAGATTCCTAAGACGGTTGGAGTAGCGAT 1529
Query 1518 ACCGATAAAAGCAACGTTCTTTATAACGTATATAATGGTAGACGGTTGGGCGGGTGTGGC 1577
|||||||||||||||||| ||||| || ||||||||||| ||||||||||||||| | ||
Sbjct 1530 ACCGATAAAAGCAACGTTTTTTATCACATATATAATGGTGGACGGTTGGGCGGGTATTGC 1589
Query 1578 GGGAGAAAT-CTTTAGGCTGAAACCA-TTAGTCATTTTCCATTTAAAGAACTTCTTCTTT 1635
||||| || || ||||||||||| ||| || |||||||| ||||||||||||| ||
Sbjct 1590 AGGAGAGATTCTG-AGGCTGAAACCTCTTA-TCTTTTTCCATATAAAGAACTTCTTATTG 1647
Query 1636 GTGAAAACTGAAAAGGATAGAGAAGAAGCTATGGATCCGGGACAGATTGATTTCTACGCT 1695
|||||||| ||||||||||| |||||||| ||| | ||||||||||| ||| | | ||
Sbjct 1648 GTGAAAACCGAAAAGGATAGGGAAGAAGCAATGAACCCGGGACAGATCAATTACCATGCG 1707
Query 1696 ACCGAGCCTCGGATTCAACTATACTTCCTCCTTGGCCTTGTCTACGCTCCTGTCACTCCT 1755
|| ||||||||||||||||| ||||||||||| || ||||||||||| ||||| |||||
Sbjct 1708 ACAGAGCCTCGGATTCAACTCTACTTCCTCCTCGGTCTTGTCTACGCCCCTGTGACTCCA 1767
Query 1756 GTTCTTCTTCCTTTCATCATCTTCTTCTTTGGTTTCGCCTACCTCGTCTTCCGTCATCAG 1815
||||| || |||||||| || ||||||||| || || ||||| ||||| |||||||||
Sbjct 1768 GTTCTACTCCCTTTCATTATAATCTTCTTTGCATTGGCTTACCTTGTCTTTCGTCATCAG 1827
Query 1816 A--A-----GT--ATGAG-AG---TGCG---G-GTG-C-A--TTCTGGCCAGACGTTCAT 1854
| | || || | || | || | | | | | ||||||||||| ||||||
Sbjct 1828 ATCATAAATGTGTATAATCAGGAATACGAAAGCGCGGCTAGGTTCTGGCCAGATGTTCAT 1887
Query 1855 GGACGTATAATATCGGCATTGATCATCTCACAAATCCTTTTGTTGGGATTAATGAGCACG 1914
|||||||||||||| |||||||||||||| |||||||||||| ||||| || |||||||
Sbjct 1888 GGACGTATAATATCAGCATTGATCATCTCGCAAATCCTTTTGATGGGACTACTGAGCACT 1947
Query 1915 AAAGGAAAAGTTCAGTCCACACCTTTCCTCCTCGTTCT-AGCGATTCTCACCTTCGGTT- 1972
|| ||| || ||| ||||| |||||||||||||| || | |||| || ||||| ||
Sbjct 1948 AAGGGAGCAGCTCAATCCACGCCTTTCCTCCTCGT-CTTACCGATCCTAACCTTT--TTC 2004
Query 1973 TTC-ATCGGTTTTGCAAAGGCCGGTACGAATCGGCATTCGTCATTAACCCGTTGCAGGAA 2031
||| | ||||| |||||||||||||| ||| | |||||| || | |||| ||| |||||
Sbjct 2005 TTCCACCGGTTCTGCAAAGGCCGGTATGAACCAGCATTCCTCCGTCACCCCTTGAAGGAA 2064
Query 2032 GCTATGATTAAGGATACATTGGAACGAGCAAGAGAACCAAACTTGAATCTTAAAGGGTTT 2091
|||||| |||| |||||||||||||||||||||||||| ||||| ||||| ||| || |
Sbjct 2065 GCTATGGTTAAAGATACATTGGAACGAGCAAGAGAACCCAACTTTAATCTGAAACCGTAT 2124
Query 2092 CTTCAGAATGCATATGTTCATCCTGTTTTTAAAGAC 2127
|||||||| |||||| ||||||| ||||| ||||||
Sbjct 2125 CTTCAGAAAGCATATATTCATCCGGTTTTCAAAGAC 2160
> Ahg342312 jgi|Araly1|342312|fgenesh1_pg.C_scaffold_3002075
Length=2271
Score = 401 bits (217), Expect = 9e-111
Identities = 1363/1891 (72%), Gaps = 180/1891 (10%)
Strand=Plus/Plus
Query 16 GATATTGGACTAGCAGCAGCGATTAATATTC-TAAGTGCATT-GATATT-TCTATTGCTA 72
||||| ||| | ||||||||||| |||| || ||| ||||| | || | ||| ||
Sbjct 16 GATATCGGAGTCGCAGCAGCGATCAATA-TCTTAACCGCATTCG-CGTTCTTTATCGC-C 72
Query 73 TTTGC-AATCTTGAGGA-TTCAACCA-TTCAATGATAGGGTTTATTTCCCTAAATGGTAC 129
||||| | |||| | || |||||||| || || || || || |||||||||||||||||
Sbjct 73 TTTGCGATTCTT-A-GACTTCAACCAGTT-AACGACAGAGTCTATTTCCCTAAATGGTA- 128
Query 130 T-TAAAAGGTGTT-AGAAGCAGCCCTGTGAATTCGGGT-GCTTTCGTTAGCAAGATTATG 186
| | || ||| || ||||| |||||| | || | ||| ||||| | ||||||| || |
Sbjct 129 TCTCAAGGGT-TTAAGAAGTAGCCCTATTAAAACTGGTGGCTTT-GCTAGCAAGTTTGTC 186
Query 187 AATTTGGACTTTCGATCATACGTTC-GGTTTTTAAACTGGATGCCTGATGCTCTTAAG-A 244
|||||||| |||||||| ||| || | || || || ||||||||| | ||| || || |
Sbjct 187 AATTTGGATTTTCGATCTTAC-ATCAGATTCTTGAATTGGATGCCTCAAGCT-TTGAGAA 244
Query 245 TGCCAGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGCTGTTTA-CTTGAGGATT 303
|||| ||||||||||||||||||||||||||||||||||||| ||| || || ||||||
Sbjct 245 TGCCTGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGTTGTCTATCTC-AGGATT 303
Query 304 TACTTGA-TTGGGCTT-AAGATCTTTGGTCCGATTGCAT-TACTTTCATGGTCAATTTTA 360
||||| | ||||| || ||||||||| ||| || |||| || || | | | | | | |
Sbjct 304 TACTT-ACTTGGG-TTGAAGATCTTTTTTCCTATAGCATGTA-TTGCTTT-T-ACTGTAA 358
Query 361 -G-TACCTGTAAATTGGAC-AAGT-GATGGATTGCAGCTAGCAAAACTTCGTAATGTAAC 416
| |||| || |||||||| || | || | ||| | | || ||| | ||| ||||
Sbjct 359 TGGTACCGGTTAATTGGACCAACTCGACG--TTGGATC-AGTTAAA----G-AATCTAAC 410
Query 417 AT-CGAGTAATATCGATAAGCTTTCGATTTCGAATGT-CGAACGTGGATCAGACAGGTTT 474
| | || |||||||||| || || || |||||| | | ||| ||||||| |||||||
Sbjct 411 TTTC-AGCGATATCGATAAACTCTCTATATCGAATATACCAAC-TGGATCATCCAGGTTT 468
Query 475 TGGGCACATCTTGTG-ATGGCTTATGC-ATTCACATTTTGGACTTGCTATGTACTAATGA 532
|||| ||| ||||| |||||||||| ||| || || ||||| |||| ||| || |
Sbjct 469 TGGGTGCAT-TTGTGTATGGCTTATGTTATT-ACCTTCTGGACATGCTTTGTTTTAC--A 524
Query 533 AGGA-A-TATGAGAAAATTGCTGCAATGCGGTTATCT-TTTCTC-CAATCAGAG-AA-GC 586
| || | || |||| |||| | | ||| || || | ||||| | || ||| || |
Sbjct 525 ACGAGAGTACAAGAATATTGGTTCCATGAGGCTA-CAGTTTCTTGCT-TCTGAGCAAAG- 581
Query 587 GACGTGCTGATCAATTCACTGTTCTGGTTAGGAACGTACCACCGGACTCA-GACGAGTC- 644
|| | |||| || || || ||||| || |||||| | || || || || || || ||
Sbjct 582 GA-GACCTGACCAGTTTACAGTTCTTGTGAGGAACATTCCTCCAGA-TCCTGATGAATCC 639
Query 645 GATTAGCGAAAACGT-GCAGCATTTCTTTCTTGTTAACCACCCAGACCATTATCTTACAC 703
| |||| ||| || | ||||||||||| || ||||| |||||| | || || ||
Sbjct 640 G-TTAGTGAACTTGTTG-AGCATTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTT 697
Query 704 ATCAGGTGGTGTACAATGCAAATGAATTGGCTAAATTGGT--AGAAGACAAGAAGAAAAT 761
| |||| ||| ||||| ||||| || || || ||||||| |||||| ||| |||||
Sbjct 698 ACCAGGCGGTCTACAACGCAAACAAACTGTCTGAATTGGTTCAGAAGAG--GAA-AAAAT 754
Query 762 -GCAGAATTGG-TTAGATTACTACCAGTTGAAGTA-TACAAGAAA-CA-AGGAACAACGG 816
|||||||||| || |||||||| || || | | | || || | | || || ||
Sbjct 755 TGCAGAATTGGCTT-GATTACTATCAAAACAAACACT-CTAGGAATCCGACTAA-AA-GG 810
Query 817 CC---ACG---GATGGGATTTCTCGGGCTAT-GGGGCAAAAAAGTAGATGCAATGGATCA 869
|| | ||| || |||||||| || | |||| || |||| |||||||| |||||
Sbjct 811 CCTTTAATAAAGATAGGTTTTCTCGG-CTGTTGGGGTGAAGAAGTTGATGCAATCGATCA 869
Query 870 TTATACAGCAGAGATCGAGAAACTTAGCGAGCAAA-TAA-TGGAAGA-AAGGAAGA--G- 923
|| | || | | |||||| || | |||| ||| ||| || |||| ||||| || |
Sbjct 870 CTACATAGAAAAAATCGAGGGTCTAA-CGAGAAAAATAAGTG-AAGAGAAGGA-GACTGT 926
Query 924 GATAAAGAAAGATGACAAAAGT-G-TAATGCAAGCAGCTTTTGTGTCTTTTAAAACGCGT 981
||| | | | | |||||| | | | ||| ||||||||||| || || |||| ||||
Sbjct 927 GATGA-GCA-GC--ACAAAA-TCGCTTGTGCCTGCAGCTTTTGTATCCTTCAAAAGGCGT 981
Query 982 TGGGGCGCTGCGGTCTGCGCGCAGACACAACAGACGAAGAATCCA-ACTGAATGGTTAAC 1040
|||||||| | || ||| | || || |||||| | ||||| || || || ||| ||||
Sbjct 982 TGGGGCGCAGTTGTTTGCTCTCAAACTCAACAGTC-AAGAAACCCGACAGAGTGGCTAAC 1040
Query 1041 CGAATGGGCTCCTGAGGCAAGAGAAATGTACTGGC-CAAATCTCGCAATGCCTTACGTAT 1099
||| |||||||| ||| | |||| || |||||| ||| ||| ||| | || || || |
Sbjct 1041 CGAGTGGGCTCCAGAGCCCCGAGACATATACTGGGACAA-TCTAGCATTACCATATGT-T 1098
Query 1100 CT-CTCACTGTAAGGAGATTTGTAAT-GCACATCGCCTTCTTCTTCCTCACGTTCTTTTT 1157
| ||||| | | ||| | ||||| || | || |||||||||||||| ||||| ||
Sbjct 1099 CAACTCACAATCCGAAGACTAGTAATAGCTG-TGGCTTTCTTCTTCCTCACTTTCTTCTT 1157
Query 1158 CATCATCCCAATCGCATTT-GTGCA-ATC-CTTAGCGAGTATTGAAGGTATCGAGAAATC 1214
||| ||||| || || ||| ||||| | | || || | |||||||| ||||| |||
Sbjct 1158 CATGATCCCTATAGC-TTTCGTGCAGA-CACTC-GCCAACATTGAAGGCATCGA-AAAGG 1213
Query 1215 C-GCTCCGTTCCTCAGTCC-CATTGTCAAA---AACAA-GTTAATGAAATCATTGATCCA 1268
| | ||| ||| | | || | || || || || || | ||| | ||||| |||||
Sbjct 1214 CTGTTCCATTCTTGAAACCGC-TTATCGAAGTGAA-AACGGTAAAG---TCATTCATCCA 1268
Query 1269 AGGTTTTCTTCCCGGTATTGTC-TTGAAGCTCTTTTTGATAT-TCCTGCCAA-CAATA-T 1324
|||||| ||||| ||||| | | |||||| | || | || | |||| |||| || || |
Sbjct 1269 AGGTTTCCTTCCGGGTATCG-CATTGAAGATATTCCTCAT-TGTCCTCCCAAGCA-TACT 1325
Query 1325 TGATGATCATGTCGAAATTCGAAGGGTTTATT--TCAATATCATCGTTAGAGAGAAGAGC 1382
| ||| | ||||||||||||||||| || || | || ||| || |||| ||||| |
Sbjct 1326 T-ATGCTAATGTCGAAATTCGAAGGCTTCATAAGT-AA-ATCTTCACTAGAAAGAAG-GT 1381
Query 1383 G-GCTTTTC-GATACTATATTTTCAACCTTG-TGAATGTTTTCCTCGGTAGCGTAATCAC 1439
| || | ||||||| || ||| | || | || ||||||||| ||||| ||||| |
Sbjct 1382 GTGCAAG-CAGATACTACATGTTCCAG-TTCATCAACGTTTTCCTCTGTAGCATAATCGC 1439
Query 1440 TGG-ATCTGCTTTTGAACAGCTCGATT-CTTTTCTTAAAC-AATCCGCAAACGACATTCC 1496
|| | |||| || ||||||| | ||| || |||| |||| |||| ||| || ||
Sbjct 1440 GGGGA-CTGCGCTTCAACAGCTTAACAGCTTC-CT-AAACCAATCTGCAACCGAAATCCC 1496
Query 1497 GCGGACAGTTGGAGTCG-CGATACCGATAAAAGCAACGTTCTTTATAACGTATATAATGG 1555
|||| |||| || | ||||||| || || || || ||||||||||| || |||||||
Sbjct 1497 AAAGACAATTGGTGT-GTCGATACCAATGAAGGCCACTTTCTTTATAACCTACATAATGG 1555
Query 1556 TAGACGGTTGGGCGGGTGTGGCGGGAGAAAT-CTTTAGGCTGAAACCATT-AGTCATTT- 1612
| ||||| ||||| ||||| || ||||| || || ||| |||||||||| | | || |
Sbjct 1556 TGGACGGATGGGCTGGTGTTGCTGGAGAGATACTG-AGGTTGAAACCATTGA-TAATCTA 1613
Query 1613 TCCATTTAAAGAACTTCTTCTTTGTGAAAACTGA-AAAGGATAGAGAAGAAGCTATGGAT 1671
|| || | |||||||||||| |||||||||| || |||| |||||||||| || ||||||
Sbjct 1614 TC-ATCTCAAGAACTTCTTCCTTGTGAAAACAGAGAAAG-ATAGAGAAGAGGCAATGGAT 1671
Query 1672 CCGGGA-CAGATTG-ATTTCTACGCTACCGAGCCTCGGATTCAACTATACTTCCTCCTTG 1729
|| ||| | || | ||| | | || || || | ||| ||||| |||||| | || |
Sbjct 1672 CCTGGAACC-ATAGGATT-CAATACTGGTGAACCACAGATACAACTCTACTTCATTCTCG 1729
Query 1730 GCCTTGTCTACGCTC-CTGTCA-CTCCTGTTCTTCTTCC-TTTCATCATCTTCTTCTTTG 1786
| || || ||||| | |||| | | || |||| ||||| ||| ||| || ||||||| |
Sbjct 1730 GTCTAGTTTACGC-CGCTGTTAGCCCCA-TTCTCCTTCCATTT-ATCCTCGTCTTCTTCG 1786
Query 1787 GTTTCGCCTACCTCGTCTT-CCGTCATCAGA 1816
|| || || | || || |||||||||||
Sbjct 1787 CCTTAGCTTATGTGGT-TTACCGTCATCAGA 1816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86998119580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5