BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62330.1
Length=2171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475111 jgi|Araly1|475111|fgenesh2_kg.2__241__AT1G62330.1 2994 0.0
> Ahg475111 jgi|Araly1|475111|fgenesh2_kg.2__241__AT1G62330.1
Length=2038
Score = 2994 bits (1621), Expect = 0.0
Identities = 1883/2009 (94%), Gaps = 20/2009 (1%)
Strand=Plus/Plus
Query 82 GAGAGACCAGACGAAGAGAAACCAGAGACTCGCGATGTTCTTCGAGTCCAAGATCTGATC 141
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 10 GAGAGACCTGACGAAGAGAAACCAGAGACTCGCGATG---TTCGAGTCCAAGATCTGATC 66
Query 142 CATGGA---GGAGGAGGAGCTTCACCGGTTCAATCACCGACACGTCTCGGTCCAACCCGC 198
|||||| |||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct 67 CATGGAGGTGGAGGAGGAGCTTCTCCGGTTCAATCACCGACTCGACTCGGTCCGGGTTGG 126
Query 199 TTTTCAGAAGTAGCTGGAGACAAGATTCTTAACACCGGGTCGAATTGTATCGGGTCGGTT 258
|| |||||||||||||| |||||||||| ||| ||||||||| ||| ||| |||||| ||
Sbjct 127 TTCTCAGAAGTAGCTGGTGACAAGATTCGTAATACCGGGTCGGATTTTATTGGGTCGATT 186
Query 259 TTGTCTTGGATCAACGGAGATCCAAACCGGAATTTGAAAAATCCGGTTAAGAGAGCAAAA 318
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 187 TTGTCTTGGATCAACGGAGATCCAAACCGGAGTTTGAAAAATCCGGTTAAGAGAGCAAAG 246
Query 319 AGGAAACGAATCAGAACGGCGAAAACCGCCGCGTTTGTAATCGTACTTGTTGGTTTCTTC 378
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 247 AGGAAACGAATCAGAACGGCGAAAACCGCCGCGTGTGTAATCGCACTTGTTGGTTTCTTC 306
Query 379 ATTTTCGTTAATTGGTTTATGCTCTCTCAGCTCCATGAAGGTCGAGCTTGGCTACGGAGA 438
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 307 ATTTTTGTTAATTGGTTTATGCTCTCTCAGCTTCATGAAGGTCGAGCTTGGCTACGGAGA 366
Query 439 GGATTCTCGaaaaaaaCGAATCTTAAACCGAAACTGAACCCGGATCCGAACTCGAGTGTG 498
|| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 367 GGGTTCTCGAAAAAACCGAATCTTAAACCGAAATTGAACCCGGATCCGAACCCGAGTATG 426
Query 499 AAACGGGTATCCGTTAAAGTGTCGGCGAATGTACAGCATAAAGAGAAGAAAAAGATGGGA 558
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 427 AAACGGGTATCCGTTAAAGTGTCGGCGAATGTACAGCATGGAGAGAAGAAAAAGATGGGA 486
Query 559 AAACCAAAGAAGACATATAATGGAACATATGGTAGATTGTTGGCTTATGCTGCTCATGCT 618
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 487 AAACCAAAGAAGAAATATAATGGAACCTATGGTAGATTGTTGGCTTATGCTGCTCATGCG 546
Query 619 TTGGCTGAGGGGCAAAACAAGCTTGAACCAAAAGAGTTGTGGAGAGAACCAAAGGACCAA 678
|||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||
Sbjct 547 TTGGCTGAGGGGCAAAACAAACTTGAACCAAAAGAGCTATGGAGAGAACCGAAGGACCAA 606
Query 679 GCTTTGGCTTGGAAGCCTTGTGCTGATCAACGTTCCTGGAAGCCTAGTGATGGTAAAAAT 738
|||||||||||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 607 ------GCTTGGAAGCCTTGCGCTGATCAACGTTCCTGGAAGCCTAATGATGGGAAAAAT 660
Query 739 GGATATATAATGGTAACTGCAAATGGTGGGATCAACCAACAGAGAGTTGCTGTTTGTAAC 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGATATATAATGGTAACTGCAAATGGTGGGATCAACCAACAGAGAGTTGCTGTTTGTAAC 720
Query 799 ATCGTTGTTGTTGCGCGGATGCTAAATGCGACACTCGTTATTCCTAAATTTATGTTCAGC 858
|||||||||||||| |||||||| ||||||||||||||| |||| ||||| ||||||||
Sbjct 721 ATCGTTGTTGTTGCTCGGATGCTCAATGCGACACTCGTTGTTCCCAAATTCATGTTCAGT 780
Query 859 GATGTCTGGACCGATGCAAGTCAGTTTGGAGATATCTATCAGGTGGAACACTTTATAAAG 918
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 781 GATGTCTGGACCGATGCAAGTCAGTTTGGAGATATCTATCAGGTGGAACATTTTATCAAG 840
Query 919 TATCTTTCTCCTGATATCCGGATTGTAAAGAAACTACCCAAAGAGCTTCAGTCTCTAGAT 978
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 TATCTCTCTCCCGATATCCGGATTGTAAAGAAACTACCAAAAGAGCTTCAGTCTCTAGAT 900
Query 979 CTTGAGGCTATTGGCAGCGTCGTTACGGATATAGATGTCATGAAAGAAGCCAAGCCCGGG 1038
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 CTTGAGGCTATTGGCAGCGTCGTTACGGATATAGATGTCATGAAAGAAGCCAAGCCGGGG 960
Query 1039 TTTTATATGAAGCACATTCTTCCTCTTCTACTCAAAAACAGAGTCGTCCATTTCTTAGGA 1098
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 961 TTTTATATGAAGCACATTCTTCCTCTTCTGCTCAAAAACAGAGTCGTCCATTTCTTCGGA 1020
Query 1099 TTCGGAAACCGTTTGGCCTTTGACCCGATACCGTTTGAGTTACAGAGGCTGCGGTGTAGA 1158
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCGGAAACCGTTTGGCCTTTGATCCGATACCGTTTGAGTTACAGAGGCTGCGGTGTAGA 1080
Query 1159 TGTAATTTTCATGCGCTAAACTTCGTTCCGAAGATACAAGAAACGGGTGCGATACTCGTA 1218
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1081 TGTAATTTTCATGCGCTAAACTTCGTTCCAAAGATACAAGAAACGGGTGCGATTCTTGTG 1140
Query 1219 AGGAGATTACGAGATAGTGGATCACACCTTGCACCAGTTGACCCGTATCTCGTCGGTCCA 1278
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 AGGAGATTACGAGATAGTGGATCACACCTTGCACCGGTTGACCCGTATCTCGTCGGTCCA 1200
Query 1279 AAATTTGCGTCATTCATATTGGACAAGAAA-GCAGGTCCTCTCCATAAGGCTTCTAAGTA 1337
||||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 1201 AAATTTGCGTCCTTCATATTGGACAA-AAAGGCGGGTCCTCTCCATAAGGCTTCTAAGTA 1259
Query 1338 TCTAGCAGTCCATCTCAGGTTTGAAATTGATATGGTGGCTCATTCTCTCTGTTACTTCGG 1397
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1260 TCTAGCAGTCCATCTCAGGTTTGAAATCGACATGGTGGCTCATTCTCTCTGTTACTTCGG 1319
Query 1398 AGGAGGTGATGCGGAAAAGGCAGAGCTTGATGCTTACCGGGAAAAGCATTTCCCGACGTT 1457
|||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct 1320 AGGAGGCGATGCAGAAAAGGCGGAACTTGATGCTTACCGGGAAAAGCATTTTCCGACACT 1379
Query 1458 GGCAAATCTAACAAAGACGCAA-AAAATGCCATCTCCAGACGATCTGAGGACAGAAGGAC 1516
|||||||||||||||||| || |||||||| ||||| ||||||||||| || ||||| |
Sbjct 1380 GGCAAATCTAACAAAGAC-AAAGAAAATGCCCTCTCCGGACGATCTGAGAACGGAAGGGC 1438
Query 1517 TTTGTCCTTTATCACCTGAAGAAGCCGTGCTTATGCTTGCGGGTCTGGGTTTTAGTCGGA 1576
||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | |||||
Sbjct 1439 TTTGTCCGTTATCACCTGAAGAAGCCGTGCTTATGCTTGCAGGTCTCGGTTTCAATCGGA 1498
Query 1577 AGACACGTGTTTTCGTCGCTGGTGCGAATATATATGGTGGGAATAAACGGTTAGCAGCTT 1636
|||| |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1499 AGACCCGTGTTTTTGTGGCTGGTGCAAATATATATGGTGGGAATAAACGGTTAGCCGCTT 1558
Query 1637 TAACGAGTCTCTACCCGAATCTAGTCACCAAAGAGAATGTACTCTCACAAACTGAGCTAG 1696
|||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1559 TAACAAGTCTCTACCCAAATCTAGTCACCAAAGAGAATGTACTCTCTGAAACGGAGCTAG 1618
Query 1697 AGCCTTTCAAGAACTTCTCATCTCAGCTAGCGGTTCTTGATTTCATTGCATGCGCTGCAT 1756
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1619 AGCCTTTCAAAAATTTCTCATCTCAGCTAGCGGTTCTTGATTTCATTGCCTGCGCAGCAT 1678
Query 1757 CAGACGCCTTTGCGATGACGGATTCAGGGAGCCAATTGTCGTCTCTGGTCTCGGGTTATC 1816
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1679 CGGACGCCTTTGCGATGACGGATTCAGGGAGCCAGTTGTCGTCTCTGGTCTCGGGTTACC 1738
Query 1817 GGATATATTACGGAGCAGGGAAAATGCCGACGATCAGACCGAACAAACGGAGATTCTCAG 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GGATATATTACGGAGCAGGGAAAATGCCGACGATCAGACCGAACAAACGGAGATTCTCAG 1798
Query 1877 ACATATTGTTGAAGAACAATACTATAGAGTGGAAAGTGTTCGAGCAGAGAGTGAGAAAAA 1936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ACATATTGTTGAAGAACAATACTATAGAGTGGAAAGTGTTCGAGCAGAGAGTGAGAAAAA 1858
Query 1937 CGGTTAGGCAAACCAAACATGTATTGGTTAGACCGACGGGACGCAGCGTTTACCGTTATC 1996
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1859 CGGTTAGGCAAACCAAACATGTATTGGTTAGACCAACGGGACGCAGCGTTTACCGTTACC 1918
Query 1997 CAAGATGTAAAGAATGTATGTGTAATGAAGATTGATTATT--TG-GTTT-ACATTGTTGG 2052
|||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||
Sbjct 1919 CAAGATGTAAAGAATGTATGTGTAGTGAAGATTGATTATTAATTTGTTTTACATTGTTGG 1978
Query 2053 TTCGGTTTTTTAAACGGTCTTCATATTTT 2081
|||||| ||||||||||| ||||||||||
Sbjct 1979 TTCGGTATTTTAAACGGTTTTCATATTTT 2007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81703575525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5