BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62333.1 Length=496 Score E Sequences producing significant alignments: (Bits) Value Ahg475110 jgi|Araly1|475110|fgenesh2_kg.2__240__AT1G62333.1 499 7e-141 > Ahg475110 jgi|Araly1|475110|fgenesh2_kg.2__240__AT1G62333.1 Length=399 Score = 499 bits (270), Expect = 7e-141 Identities = 337/368 (92%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 1 ATTGCAATAACAATTCACAAAATGCCTTATCCTCCTCCTCATCGTCAT-C--CTCCTCCT 57 ||||||||||||| |||||||||||| |||||||||||||||||| | | |||||||| Sbjct 1 ATTGCAATAACAAAGCACAAAATGCCTCATCCTCCTCCTCATCGTCCTCCTTCTCCTCCT 60 Query 58 TTCCACCATCCACCGCCACCAAGaccaccgcctccggagcctcgccctcctccacctcct 117 ||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||| Sbjct 61 TTCCACCATTCACCGCCACCAAGAGCACGGCCTCCAGAGCCTCGCCCTCCTCCACCTCCT 120 Query 118 ccaggacctcagccaccacctccacctcctcccagacctgatccaccacctccacTTCCC 177 ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||| Sbjct 121 CCAGGACCTCAGCCACCTCCTCCACCTCCTCCGGGACCTGACCCACCACCTCCACCTCCC 180 Query 178 GGAGCTACTTGGTTTCCAGGACTTCTTGGGCCACGCCCTCCTAGACCACCATATTAGT-- 235 || |||||||||||| |||||| |||||||||||||||||||||||||| |||||||| Sbjct 181 GGGGCTACTTGGTTTTCAGGACCTCTTGGGCCACGCCCTCCTAGACCACAATATTAGTAT 240 Query 236 CGTCATGAATGTTTTGGTCTATTTAAGTATATAATTCGAA-ATATATATTGTCGAAACAT 294 |||||||||| |||||||||| ||||||||||||||| || ||||||||||||||||||| Sbjct 241 CGTCATGAAT-TTTTGGTCTAATTAAGTATATAATTC-AACATATATATTGTCGAAACAT 298 Query 295 CTTAGATCTTTAAAGATTTCATATGTGTA--ACACTTTCATGTGTATTAGGCTCATCTGT 352 |||||||||||||||||||||||| || | ||||||||||||||||||||||||| ||| Sbjct 299 CTTAGATCTTTAAAGATTTCATATCTGCATGACACTTTCATGTGTATTAGGCTCATATGT 358 Query 353 GTAATCAT 360 |||||||| Sbjct 359 GTAATCAT 366 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18009438008 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5