BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G62333.1

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475110 jgi|Araly1|475110|fgenesh2_kg.2__240__AT1G62333.1          499    7e-141


> Ahg475110 jgi|Araly1|475110|fgenesh2_kg.2__240__AT1G62333.1
Length=399

 Score =  499 bits (270),  Expect = 7e-141
 Identities = 337/368 (92%), Gaps = 10/368 (3%)
 Strand=Plus/Plus

Query  1    ATTGCAATAACAATTCACAAAATGCCTTATCCTCCTCCTCATCGTCAT-C--CTCCTCCT  57
            |||||||||||||  |||||||||||| |||||||||||||||||| | |  ||||||||
Sbjct  1    ATTGCAATAACAAAGCACAAAATGCCTCATCCTCCTCCTCATCGTCCTCCTTCTCCTCCT  60

Query  58   TTCCACCATCCACCGCCACCAAGaccaccgcctccggagcctcgccctcctccacctcct  117
            ||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct  61   TTCCACCATTCACCGCCACCAAGAGCACGGCCTCCAGAGCCTCGCCCTCCTCCACCTCCT  120

Query  118  ccaggacctcagccaccacctccacctcctcccagacctgatccaccacctccacTTCCC  177
            ||||||||||||||||| ||||||||||||||  ||||||| ||||||||||||| ||||
Sbjct  121  CCAGGACCTCAGCCACCTCCTCCACCTCCTCCGGGACCTGACCCACCACCTCCACCTCCC  180

Query  178  GGAGCTACTTGGTTTCCAGGACTTCTTGGGCCACGCCCTCCTAGACCACCATATTAGT--  235
            || |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||  
Sbjct  181  GGGGCTACTTGGTTTTCAGGACCTCTTGGGCCACGCCCTCCTAGACCACAATATTAGTAT  240

Query  236  CGTCATGAATGTTTTGGTCTATTTAAGTATATAATTCGAA-ATATATATTGTCGAAACAT  294
            |||||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct  241  CGTCATGAAT-TTTTGGTCTAATTAAGTATATAATTC-AACATATATATTGTCGAAACAT  298

Query  295  CTTAGATCTTTAAAGATTTCATATGTGTA--ACACTTTCATGTGTATTAGGCTCATCTGT  352
            |||||||||||||||||||||||| || |  ||||||||||||||||||||||||| |||
Sbjct  299  CTTAGATCTTTAAAGATTTCATATCTGCATGACACTTTCATGTGTATTAGGCTCATATGT  358

Query  353  GTAATCAT  360
            ||||||||
Sbjct  359  GTAATCAT  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18009438008


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5