BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62340.1
Length=2636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924765 jgi|Araly1|924765|scaffold_200326.1 3563 0.0
> Ahg924765 jgi|Araly1|924765|scaffold_200326.1
Length=2542
Score = 3563 bits (1929), Expect = 0.0
Identities = 2337/2539 (92%), Gaps = 8/2539 (0%)
Strand=Plus/Plus
Query 1 TCCTAATAAAGATCTAATGGAAACCAATCCAAGAAAACTAAGATCATATTCCTACATATG 60
||||||||| ||| |||||||||| |||||||||||| || | ||||||| ||||||||
Sbjct 8 TCCTAATAAGGATTTAATGGAAACTAATCCAAGAAAAATACGGTCATATTGTTACATATG 67
Query 61 TTTAATAGTATGTATATTTGTATTGGTTGTTTGTGCAATATTGTCCAGAGCAGAAGAAAA 120
|| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 68 GTTGATAGTATGCATATTTGTATTGATTGTTTGTTCAATATTGTCCAGAGCAGAAGAAAA 127
Query 121 AGAAGGAAAAGGCGAAAACGATGATCATATACCAAAGATTTACTCTATTTTGGTTGAAGG 180
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 128 AGAAGGAAAAAACGAAAACGATGATCATATACCAAAGATTTACTCTGTTTTGGTTGAAGG 187
Query 181 TGAACCATTGGCCTTTCGAGCTTCTACTAATATCAACAGCAAAGCTATGGCGTTA-GAAG 239
|||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||
Sbjct 188 TGAACCATTGGCCTTTCGTGCTTCTACTAACATCAACAGCAAAGCTATGGC-ATATGAAG 246
Query 240 CAAAGAAGATAGAAGAGATTCATGACGAAATACTTGGAAGCACACTTGAAAAGGGAAGTT 299
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 247 CAAAGAAGATAGTAGAGATTCATGACGAAATACTTGGAAGCACACTTGAAAATGGAAGTT 306
Query 300 ATACAAAGCTTTATAGCTTCAAACATGTCATCAATGCTATTGCAGTCCGTACCACTGCTT 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 307 ATACAAAGCTTTATAGCTTCAAACATGTCATCAATGCTTTTGCAGTCCGTACCACTGCTT 366
Query 360 CTCAGGCCAAGAAACTCGGGAAAACAAAAGGAGTGAAGGCAGTAGAAGAAGACAAAGGAG 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CTCAGGCCAAGAAACTAAAGAAAACAAAAGGAGTGAAGGCAGTAGAAGAAGACAAAGGAG 426
Query 420 TGAAACTAATGACAACATACACTCCCGATTTCTTGGAACTTCCTCAACAAGTCTGGCAAA 479
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
Sbjct 427 TGAAACTAATGACAACTTACACTCCCGATTTCTTGGAACTTCCTAAACAAGTCTGGCCTA 486
Query 480 AGATCTCAAACGAAGGAGACAGACGTGCTGGAGAAGACATCGTGATCGGTTTCGTGGACA 539
||||||| | ||||| | |||||| || |||||||| ||||| |||||||| |||||||
Sbjct 487 AGATCTCCAGTGAAGGTGGCAGACGCGCAGGAGAAGATATCGTAATCGGTTTTGTGGACA 546
Query 540 CCGGAATTAACCCTACTCATCCTAGCTTCGCCGCACTTGATCTCACAAACCCTTACTCAT 599
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 547 CTGGAATTAACCCTACTCATCCGAGCTTCGCCGCACTCGATCTCACAAACCCTTACTCAT 606
Query 600 CAAATCTCTCACGTTTGCATTTCTCCGGTGACTGTGAGATCGGTCCCTTTTTTCCACC-C 658
||||||||||||||||| | |||||||| |||||||||| |||| ||| | |||| || |
Sbjct 607 CAAATCTCTCACGTTTGAAATTCTCCGGCGACTGTGAGACCGGT-CCTCTCTTCC-CCGC 664
Query 659 -GGATCTTGTAACGGAAAAATTATCTCCGCAAGGTTCTTTTCCGCCGGAGCTCGAGCTTC 717
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 665 TGGATCTTGTAACGGAAAAATCATATCCGCTAGGTTCTTTTCCGCCGGAGCTCGAGCTTC 724
Query 718 AG-GCGCTCTTAACTCCTCCTTGGATATACTCTCTCCGTTCGATGCGTCCGGCCACGGAA 776
| | ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 725 CGTG-GCTCTCAACTCCTCATTGGATATACTCTCTCCGTTCGATGCCTCCGGCCACGGAA 783
Query 777 GCCACGTGGCATCCATCGCAGCCGGGAACGCTGGAGTTCCGGTGATCGTCGACGGATTCT 836
||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 784 GCCACGTGGCATCTATCGCAGCCGGCAACGCTGGTGTTCCAGTGATCGTCGACGGATTCT 843
Query 837 TCTACGGCCGTGCTAGCGGTATGGCCCCACGTTCACGAATAGCCGTCTACAAGGCGATTT 896
||||||| | || |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 844 TCTACGGACAAGCCAGCGGTATGGCCCCACGTGCACGAATAGCCGTTTACAAGGCGATTT 903
Query 897 ATCCATCAATCGGAACTCTTGTTGACGTAATTGCAGCCATCGACCAAGCAATTATGGACG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 ATCCATCAATCGGAACTCTTGTTGACGTAATTGCAGCCATCGACCAAGCAATTATGGACG 963
Query 957 GCGTAGATGTGTTGACGCTATCGGTTGGACCAGACGAACCACCGGTGGATAAGCCCACGG 1016
|||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 964 GCGTAGATGTATTGACACTATCGGTGGGACCGGACGAACCACCGGTGGATAAACCGACGG 1023
Query 1017 TACTCGGGATATTCGACCTCGCAATGCTATTGGCTAGAAAAGCCGGCGTGTTTGTGGTGC 1076
|||||||||||||||| || ||||||||||||||||||| || || || ||||||||||
Sbjct 1024 TACTCGGGATATTCGATCTATCAATGCTATTGGCTAGAAAGGCTGGGGTATTTGTGGTGC 1083
Query 1077 AAGCCGTAGGGAATAATGGCCCGTCGCCGTCTTCTGTGTTGTCTTATAGTCCGTGGGTCG 1136
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1084 AAGCCGTAGGGAATAATGGCCCGTCACCGTCTTCTGTCTTGTCTTATAGTCCGTGGGTCG 1143
Query 1137 TCGGTGTTGCTGCCGGAAATACTGACCGGTCTTATCCTGCCCCCCTCATCCTCGACGGTG 1196
|||| ||||| || |||| ||| |||||||||||||||||| |||| || || |||||||
Sbjct 1144 TCGGGGTTGCCGCAGGAAGTACGGACCGGTCTTATCCTGCCTCCCTTATTCTTGACGGTG 1203
Query 1197 GCCAAACCGTTCAGGGCGTTGGACTATCAGGTCCAACCCTTGGAGCTCCATTAGTTCAAC 1256
|||| |||||| | ||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct 1204 GCCAGACCGTTTATGGCGTCGGCCTATCAGGTCCAACCCTTGGAGCTCCATTACTTCAAC 1263
Query 1257 ACAGACTTGTCTTAGCCAAAGACGCTGTTAGAACAAACGGCTCGGTTCTACAACCCTTAA 1316
|||| || |||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1264 ACAGGCTAGTCTTAGCCAGAGACGCTGTTAGAACAAACGGCTCGGTTCTACAACCCCTAA 1323
Query 1317 CCAGAGACATTGAAGAATGCCAGCGGCCGGAGAATTTTGACCCTGCCGCAGTTTTTGGAA 1376
|| |||||||||||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct 1324 GAAGTGACATTGAAGAATGCCAGCGTCCAGAGAATTTTGACCCAGCCGCGGTTTTTGGAA 1383
Query 1377 GTATCGTGATATGTACATTTTCTGATGGCTTCTACAATCAGATGTCGACCGTTCTTGCCA 1436
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1384 CTATTGTGATATGTACATTTTCTGATGGCTTCTACAATCAGATGTCGACCGTTCGAGCCA 1443
Query 1437 TCACCCAAACCGCCAGGACTCTTGGTTTCATGGGTTTTATACTCATTGCAAATCCTAGAT 1496
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 TCACCCAAACCGCTAGGAATCTTGGTTTCATGGGTTTTATACTCATTGCAAATCCTAGAT 1503
Query 1497 TCGGCGATTATGTTGCAGAACCAGTGATATTTTCAGCTCCTGGTATTCTAATCCCTACAG 1556
|||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1504 TCGGTGATTATGTTGCAGAACCAGTGTTATTTTCGGCTCCTGGTATTCTAATCCCTACAG 1563
Query 1557 TATCAGCTGCCCAGATTATTTTGAGATACTACGAAGAGAAAACCTTTAGAGACACGAGAG 1616
||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 1564 TATCAGCTGCCCAGATTATTTTGAGGTACTACGAAGAGAAAACCTACAGAGACAAGAGAG 1623
Query 1617 GAGTGGCGACACAATTTGGGGCACGTGCTAGAATAGGCGAAGGCCGAAACTCGGTCTTCG 1676
|| | | |||||||||||||||||||| ||||| | ||||| || |||||||||||||
Sbjct 1624 GAATAGTGACACAATTTGGGGCACGTGGAAGAATTGATGAAGGACGGAACTCGGTCTTCG 1683
Query 1677 CCGGAAAAGCACCGGTGGTGAGCAGATTTTCTTCGAGAGGGCCAGCTTTTATTGATGCAA 1736
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1684 CCGGAAAAGCACCGGTCGTGAGCAGATTCTCTTCGAGAGGACCAGCTTTTATTGATGCAA 1743
Query 1737 CTCGGAGTCCTTTAGATGTACTTAAGCCAGATATTCTTGCACCTGGTCACCAAATTTGGG 1796
||||| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1744 ATCGGAATCTTTTAGATGTGCTTAAGCCAGATATTCTTGCACCTGGTCACCAAATATGGG 1803
Query 1797 GTGCTTGGAGCCTCCCTAGTGCCTTTGATCCTATTTTGACAGGACGAAGCTTTGCCATAT 1856
| || |||||||||||||||||||||||||||||| | || ||||| |||||||| ||||
Sbjct 1804 GAGCCTGGAGCCTCCCTAGTGCCTTTGATCCTATTCTCACTGGACGGAGCTTTGCAATAT 1863
Query 1857 TGTCGGGAACAAGCATGGCGACTCCTCATATAGCAGGGATTGGTGCGCTCATAAAACAAC 1916
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1864 TGTCGGGAACAAGCATGGCCACTCCTCATATAGCGGGGATTGGTGCACTCATAAAACAGC 1923
Query 1917 TTAATCCTTCTTGGACTCCAGCCATGATTGCATCTGCCATCTCCACCACGGCTAACGAAT 1976
||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1924 TTAATCCTTCTTGGACTCCGGCCATGATTGCATCGGCCATCTCCACCACGGCCAACGAAT 1983
Query 1977 ACGATAGTAATGGTGAAATTATATCAGCGGAGTATTATGAGCTAAGTAGATTATTTCCAT 2036
|||| ||| ||||||| ||||||||||||||| |||||| ||||| |||||||||| |
Sbjct 1984 ACGACAGTTCTGGTGAAGTTATATCAGCGGAGTCTTATGAAATAAGTGGATTATTTCCTT 2043
Query 2037 CTAATCATTTTGATCATGGTGCGGGCCATGTTAATCCTGCTAGAGCCCTAGATCCTGGAC 2096
|||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2044 CTAATCATTTCGATCATGGCGCGGGCCATGTTAATCCTGCTAGAGCCTTAGATCCTGGAC 2103
Query 2097 TAGTTTTACCCGCTGGTTTTGAAGACTACATAAGTTTCTTGTGCTCACTGCCAAACATTA 2156
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2104 TGGTTTTACCCGCTGGTTTTGAAGACTACATAAGTTTCTTGTGTTCACTGCCAAACATTA 2163
Query 2157 GCCCAGCCACTATCCGAGACGCGACAGGAGTCTTGTGTACCACTACGCTTAGCCACCCAG 2216
||| | ||| || |||| ||| || ||||||| ||| |||||| | ||||||||||| |
Sbjct 2164 ACCCGGTCACAATTCGAGCCGCAACTGGAGTCTCGTGCACCACTGCACTTAGCCACCCGG 2223
Query 2217 CGAACCTTAACCATCCGTCAGTAACTATATCTGCACTTAAAGAGTCACTTGTGGTGAGAA 2276
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2224 CGAACCTTAACCATCCGTCAGTGACTATATCTGCCCTTAAAGAGTCACTTGTGGTGAGAA 2283
Query 2277 GAAGTTTCCAAGACGTCTCCAACAAGACTGAGACATATCTTGGTTCGGTTTTACCTCCCA 2336
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2284 GAAGTTTCCAAAACGTCTCAAACAAGACTGAGACATATCTTGGTTCGGTTTTACCTCCCA 2343
Query 2337 ATGGTACAACTGTACGGTTAACCCCAACTTGGTTTACCGTACCACCACAGAAAACTCAAG 2396
|||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 2344 ATGGTACAACTGTACGGTTAACCCCATCTTATTTTACCGTACCACCACAGAGAACTCAAG 2403
Query 2397 ACCTAGACATCGAATTCAATGTCACACAAGTCTTAAACAAGTTTACATTTGGTGAAGTTG 2456
| || || |||||||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct 2404 ATCTGGATATCGAATTCAATATCACACAAGTCTTAACCAAGTTCACATTTGGTGAAGTTG 2463
Query 2457 TTCTTACTGGAAGCTTAAACCATATTATAAGAATACCGTTGTCAGTTAAAACCATTTGAA 2516
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2464 TTCTTACCGGAAGCTTAAACCATATTATAAGAATACCGTTGTCAGTTAAAACCATTTGAA 2523
Query 2517 AACATAAAATTTTATTGTT 2535
||||||||||||| |||||
Sbjct 2524 AACATAAAATTTTCTTGTT 2542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99415539450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5