BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62350.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value Ahg475108 jgi|Araly1|475108|fgenesh2_kg.2__238__AT1G62350.1 881 0.0 > Ahg475108 jgi|Araly1|475108|fgenesh2_kg.2__238__AT1G62350.1 Length=591 Score = 881 bits (477), Expect = 0.0 Identities = 554/592 (94%), Gaps = 2/592 (0%) Strand=Plus/Plus Query 1 ATGAGCAAAGAAGGTTTAATCGCAGCCAAAGAGCTCAAGCGTCTCCAAACCCAATCAGTC 60 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 1 ATGAGCAAAGAAGGTTTAATCGCTGCCAAAGAGCTCAAGCGTCTCCAAACCCAATTAGTC 60 Query 61 CGACTTGATCGATTCATTGGTTCTCATGTCTCTCGTCTCCTTAAATCCGATCTCGTTTCC 120 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 61 CGACTTGATCGATTCATTGCTTCTCATGTCTCTCGTCTCCTTAAATCCGATCTTGTTTCT 120 Query 121 GTTCTTGCTGAATTTCAGAGACAAAACCAAGTGTTCCTCTGTATGAAGCTCTATGAAGTA 180 ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 121 GTTCTTGCTGAGTTTCAGAGACAAAACCAAGTTTTCCTCTGTATGAAGCTTTATGAAGTT 180 Query 181 GTGAGGAGAGAAATATGGTACAGACCGGACATGtttttttACAGAGACATGCTAATGATG 240 ||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| |||||| Sbjct 181 GTGAGAAGAGAAATATGGTATAGAGCGGATATGTTTTTTTACAGAGACATGCTCATGATG 240 Query 241 CTTGCAAGAAACAAGAAAGTTGATGAAACCAAGAAAGTATGGGAAGATTTAAAGAAAGAA 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTTGCAAGAAACAAGAAAGTGGATGAAACCAAGAAAGTATGGGAAGATTTAAAGAAAGAA 300 Query 301 -GAGGTTTTGTTTGATCAACATACATTTGGAGACCTTGTTCGAGGGTTCTTGGATAATGA 359 || |||||||||||||||||||| ||||||||||||||||||| |||||||||||| || Sbjct 301 GGA-GTTTTGTTTGATCAACATACTTTTGGAGACCTTGTTCGAGCGTTCTTGGATAACGA 359 Query 360 ACTTCCTTTAGAAGCAATGAGATTGTATGGAGAGATGAGAGAGTCTCCTGACCGGCCTTT 419 |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 360 ACTTCCGTTAGAAGCAATGAGATTGTATGGAGAGATGAGAGATTCTCCTGACCCGCCTTT 419 Query 420 ATCTCTGCCTTTTCGAGTTATTTTGAAAGGACTCGTTCCTTATCCTGAGTTGAGAGAGAA 479 ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| Sbjct 420 GTCTCTGCCTTTTCGAGTTATTCTGAAAGGACTCGTTCCTTATCCTGAATTGAGGGAGAA 479 Query 480 AGTTAAAGATGATTTCTTGGAGCTTTTCCCTGGAATGATTGTATACGATCCTCCTGAGGA 539 ||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 480 AGTGAAAGATGATTTCTTGGAGCTTTTCCCTGGAATGATTGTGTATGATCCTCCCGAGGA 539 Query 540 TATATGTGAAGATAGTGATGAAGAAGCAAGAACAGATAGCGATCTTGAATAG 591 | | || ||||| |||||||||||||| ||||||||||| |||||||| ||| Sbjct 540 TTTGTGCGAAGAAAGTGATGAAGAAGCGAGAACAGATAGTGATCTTGAGTAG 591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22721258532 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5