BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62350.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475108 jgi|Araly1|475108|fgenesh2_kg.2__238__AT1G62350.1 881 0.0
> Ahg475108 jgi|Araly1|475108|fgenesh2_kg.2__238__AT1G62350.1
Length=591
Score = 881 bits (477), Expect = 0.0
Identities = 554/592 (94%), Gaps = 2/592 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAAAGAAGGTTTAATCGCAGCCAAAGAGCTCAAGCGTCTCCAAACCCAATCAGTC 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGAGCAAAGAAGGTTTAATCGCTGCCAAAGAGCTCAAGCGTCTCCAAACCCAATTAGTC 60
Query 61 CGACTTGATCGATTCATTGGTTCTCATGTCTCTCGTCTCCTTAAATCCGATCTCGTTTCC 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CGACTTGATCGATTCATTGCTTCTCATGTCTCTCGTCTCCTTAAATCCGATCTTGTTTCT 120
Query 121 GTTCTTGCTGAATTTCAGAGACAAAACCAAGTGTTCCTCTGTATGAAGCTCTATGAAGTA 180
||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 121 GTTCTTGCTGAGTTTCAGAGACAAAACCAAGTTTTCCTCTGTATGAAGCTTTATGAAGTT 180
Query 181 GTGAGGAGAGAAATATGGTACAGACCGGACATGtttttttACAGAGACATGCTAATGATG 240
||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||
Sbjct 181 GTGAGAAGAGAAATATGGTATAGAGCGGATATGTTTTTTTACAGAGACATGCTCATGATG 240
Query 241 CTTGCAAGAAACAAGAAAGTTGATGAAACCAAGAAAGTATGGGAAGATTTAAAGAAAGAA 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGCAAGAAACAAGAAAGTGGATGAAACCAAGAAAGTATGGGAAGATTTAAAGAAAGAA 300
Query 301 -GAGGTTTTGTTTGATCAACATACATTTGGAGACCTTGTTCGAGGGTTCTTGGATAATGA 359
|| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 301 GGA-GTTTTGTTTGATCAACATACTTTTGGAGACCTTGTTCGAGCGTTCTTGGATAACGA 359
Query 360 ACTTCCTTTAGAAGCAATGAGATTGTATGGAGAGATGAGAGAGTCTCCTGACCGGCCTTT 419
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 360 ACTTCCGTTAGAAGCAATGAGATTGTATGGAGAGATGAGAGATTCTCCTGACCCGCCTTT 419
Query 420 ATCTCTGCCTTTTCGAGTTATTTTGAAAGGACTCGTTCCTTATCCTGAGTTGAGAGAGAA 479
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 420 GTCTCTGCCTTTTCGAGTTATTCTGAAAGGACTCGTTCCTTATCCTGAATTGAGGGAGAA 479
Query 480 AGTTAAAGATGATTTCTTGGAGCTTTTCCCTGGAATGATTGTATACGATCCTCCTGAGGA 539
||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 480 AGTGAAAGATGATTTCTTGGAGCTTTTCCCTGGAATGATTGTGTATGATCCTCCCGAGGA 539
Query 540 TATATGTGAAGATAGTGATGAAGAAGCAAGAACAGATAGCGATCTTGAATAG 591
| | || ||||| |||||||||||||| ||||||||||| |||||||| |||
Sbjct 540 TTTGTGCGAAGAAAGTGATGAAGAAGCGAGAACAGATAGTGATCTTGAGTAG 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5