BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62360.1
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338146 jgi|Araly1|338146|fgenesh1_pg.C_scaffold_2000245 1544 0.0
Ahg470845 jgi|Araly1|470845|fgenesh2_kg.1__799__AT1G07950.1 119 6e-26
> Ahg338146 jgi|Araly1|338146|fgenesh1_pg.C_scaffold_2000245
Length=999
Score = 1544 bits (836), Expect = 0.0
Identities = 902/935 (96%), Gaps = 0/935 (0%)
Strand=Plus/Plus
Query 215 CTCCTCCCCAAGGAACTAAGAACAAAGTTGCTTCTTCTTCTTCTCCTTCCTCTTGTGCTC 274
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 65 CTCCTCCCCAAGGAACTAAGAACAAAGTCGCTTCTTCTTCTTCTCCTTCCTCTTGTGCTC 124
Query 275 CTGCCTATTCTCTAATGGAGATCCATCATAACGAAATCGTTGCAGGAGGAATCAACCCTT 334
|||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 125 CTGCTTATTCCCTAATGGAGATCCATCATAACGAAATCGTTGCCGGAGGGATCAACCCTT 184
Query 335 GCTCCTCTTCCTCTTCTTCAGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTCACTACC 394
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GCTCCTCTTCCTCTTCTTCGGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTCACTACC 244
Query 395 ACCGCCTCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGG 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 ACCGCCTCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGG 304
Query 455 CGAGGCTAGAGGAGGCATGCTCGTCTGCCGCAGCCGCTGCCGCATCTATGGGACCAACAG 514
||| || |||||||||||||||||||| || ||||| |||||||| |||||||||||||
Sbjct 305 TGAGACTGGAGGAGGCATGCTCGTCTGCGGCCGCCGCCGCCGCATCGATGGGACCAACAG 364
Query 515 GATGTCTAGGTGAAGATCCAGGGCTTGATCAATTCATGGAAGCTTACTGTGAAATGCTCG 574
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 365 GGTGTCTAGGTGAAGATCCAGGGCTTGATCAATTTATGGAAGCTTACTGTGAAATGCTTG 424
Query 575 TTAAGTATGAGCAAGAGCTCTCCAAACCTTTCAAGGAAGCTATGGTCTTCCTTCAACGTG 634
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 425 TTAAGTATGAGCAAGAGCTCTCCAAACCATTCAAGGAAGCTATGGTCTTCCTTCAACGTG 484
Query 635 TCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTTATGGAG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTTATGGAG 544
Query 695 AGACAGCAATTGATAGGAACAATAATGGGTCATCCGAGGAAGAAGTCGATATGAACAATG 754
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 545 AGACAGCAATTGATAGGAACAATAATGGGTCATCGGAGGAAGAAGTCGATATGAATAATG 604
Query 755 AATTTGTAGATCCACAAGCTGAGGATAGAGAGCTTAAAGGACAGCTCTTGCGCAAGTACA 814
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 605 AATTTGTAGATCCGCAAGCTGAGGATAGGGAGCTTAAAGGACAGCTCTTGCGCAAGTACA 664
Query 815 GTGGTTACTTAGGGAGCCTCAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCC 874
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 665 GTGGTTACTTAGGGAGCCTCAAACAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCC 724
Query 875 CTAAAGAAGCTCGTCAACAACTGCTTGATTGGTGGAGCCGTCACTACAAATGGCCTTACC 934
||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 725 CTAAAGAAGCTCGCCAACAATTGCTTGATTGGTGGAGCCGCCACTACAAATGGCCTTACC 784
Query 935 CTTCGGAGCAACAAAAGCTCGCCCTTGCGGAATCAACGGGGCTGGACCAGAAACAGATAA 994
||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 785 CTTCGGAGCAACAGAAGCTCGCGCTGGCGGAATCAACAGGGCTGGACCAGAAACAGATAA 844
Query 995 ACAATTGGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGACATGCAGTTTG 1054
||||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||
Sbjct 845 ACAATTGGTTCATAAACCAGAGGAAACGGCATTAGAAGCCATCTGAGGATATGCAGTTTG 904
Query 1055 TAGTAATGGACGCAACACATCCTCACCATTACTTCATGGATAATGTCTTGGGCAATCCTT 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TAGTAATGGACGCAACACATCCTCACCATTACTTCATGGATAATGTCTTGGGCAATCCTT 964
Query 1115 TCCCAATGGATCACATCTCCTCCACCATGCTTTGA 1149
|||||||||||||||||||||||||||||||||||
Sbjct 965 TCCCAATGGATCACATCTCCTCCACCATGCTTTGA 999
Score = 115 bits (62), Expect = 8e-25
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGTGGTTCCAACAGCACTTCTTGTCCAATGGCTTTTGCCGGGGATAATAGTGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGTGGTTCCAACAGCACTTCTTGTCCAATGGCTTTTGCCGGGGATAATAGTGAT 60
Query 61 GGTCC 65
| |||
Sbjct 61 GCTCC 65
> Ahg470845 jgi|Araly1|470845|fgenesh2_kg.1__799__AT1G07950.1
Length=666
Score = 119 bits (64), Expect = 6e-26
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 984 GAAACAGATAAACAATTGGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGA 1043
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 472 GAAACAGATAAACAATTGGTTCATAAACCAGAGGAAACGGCATTAGAAGCCATCGGAGGA 531
Query 1044 CATGCAGTTTGTAGTAATGGAC 1065
||||||||| ||| ||||||
Sbjct 532 TATGCAGTTTAAAGTCATGGAC 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51008462946
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5