BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62360.1 Length=1363 Score E Sequences producing significant alignments: (Bits) Value Ahg338146 jgi|Araly1|338146|fgenesh1_pg.C_scaffold_2000245 1544 0.0 Ahg470845 jgi|Araly1|470845|fgenesh2_kg.1__799__AT1G07950.1 119 6e-26 > Ahg338146 jgi|Araly1|338146|fgenesh1_pg.C_scaffold_2000245 Length=999 Score = 1544 bits (836), Expect = 0.0 Identities = 902/935 (96%), Gaps = 0/935 (0%) Strand=Plus/Plus Query 215 CTCCTCCCCAAGGAACTAAGAACAAAGTTGCTTCTTCTTCTTCTCCTTCCTCTTGTGCTC 274 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 65 CTCCTCCCCAAGGAACTAAGAACAAAGTCGCTTCTTCTTCTTCTCCTTCCTCTTGTGCTC 124 Query 275 CTGCCTATTCTCTAATGGAGATCCATCATAACGAAATCGTTGCAGGAGGAATCAACCCTT 334 |||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 125 CTGCTTATTCCCTAATGGAGATCCATCATAACGAAATCGTTGCCGGAGGGATCAACCCTT 184 Query 335 GCTCCTCTTCCTCTTCTTCAGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTCACTACC 394 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 185 GCTCCTCTTCCTCTTCTTCGGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTCACTACC 244 Query 395 ACCGCCTCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGG 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 ACCGCCTCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGG 304 Query 455 CGAGGCTAGAGGAGGCATGCTCGTCTGCCGCAGCCGCTGCCGCATCTATGGGACCAACAG 514 ||| || |||||||||||||||||||| || ||||| |||||||| ||||||||||||| Sbjct 305 TGAGACTGGAGGAGGCATGCTCGTCTGCGGCCGCCGCCGCCGCATCGATGGGACCAACAG 364 Query 515 GATGTCTAGGTGAAGATCCAGGGCTTGATCAATTCATGGAAGCTTACTGTGAAATGCTCG 574 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 365 GGTGTCTAGGTGAAGATCCAGGGCTTGATCAATTTATGGAAGCTTACTGTGAAATGCTTG 424 Query 575 TTAAGTATGAGCAAGAGCTCTCCAAACCTTTCAAGGAAGCTATGGTCTTCCTTCAACGTG 634 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 425 TTAAGTATGAGCAAGAGCTCTCCAAACCATTCAAGGAAGCTATGGTCTTCCTTCAACGTG 484 Query 635 TCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTTATGGAG 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 TCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTTATGGAG 544 Query 695 AGACAGCAATTGATAGGAACAATAATGGGTCATCCGAGGAAGAAGTCGATATGAACAATG 754 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 545 AGACAGCAATTGATAGGAACAATAATGGGTCATCGGAGGAAGAAGTCGATATGAATAATG 604 Query 755 AATTTGTAGATCCACAAGCTGAGGATAGAGAGCTTAAAGGACAGCTCTTGCGCAAGTACA 814 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 605 AATTTGTAGATCCGCAAGCTGAGGATAGGGAGCTTAAAGGACAGCTCTTGCGCAAGTACA 664 Query 815 GTGGTTACTTAGGGAGCCTCAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCC 874 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 665 GTGGTTACTTAGGGAGCCTCAAACAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCC 724 Query 875 CTAAAGAAGCTCGTCAACAACTGCTTGATTGGTGGAGCCGTCACTACAAATGGCCTTACC 934 ||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 725 CTAAAGAAGCTCGCCAACAATTGCTTGATTGGTGGAGCCGCCACTACAAATGGCCTTACC 784 Query 935 CTTCGGAGCAACAAAAGCTCGCCCTTGCGGAATCAACGGGGCTGGACCAGAAACAGATAA 994 ||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 785 CTTCGGAGCAACAGAAGCTCGCGCTGGCGGAATCAACAGGGCTGGACCAGAAACAGATAA 844 Query 995 ACAATTGGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGACATGCAGTTTG 1054 ||||||||||||||||||||||||||||||||| |||||| || ||||| |||||||||| Sbjct 845 ACAATTGGTTCATAAACCAGAGGAAACGGCATTAGAAGCCATCTGAGGATATGCAGTTTG 904 Query 1055 TAGTAATGGACGCAACACATCCTCACCATTACTTCATGGATAATGTCTTGGGCAATCCTT 1114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 TAGTAATGGACGCAACACATCCTCACCATTACTTCATGGATAATGTCTTGGGCAATCCTT 964 Query 1115 TCCCAATGGATCACATCTCCTCCACCATGCTTTGA 1149 ||||||||||||||||||||||||||||||||||| Sbjct 965 TCCCAATGGATCACATCTCCTCCACCATGCTTTGA 999 Score = 115 bits (62), Expect = 8e-25 Identities = 64/65 (98%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 ATGGAGAGTGGTTCCAACAGCACTTCTTGTCCAATGGCTTTTGCCGGGGATAATAGTGAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAGTGGTTCCAACAGCACTTCTTGTCCAATGGCTTTTGCCGGGGATAATAGTGAT 60 Query 61 GGTCC 65 | ||| Sbjct 61 GCTCC 65 > Ahg470845 jgi|Araly1|470845|fgenesh2_kg.1__799__AT1G07950.1 Length=666 Score = 119 bits (64), Expect = 6e-26 Identities = 76/82 (93%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 984 GAAACAGATAAACAATTGGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGA 1043 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 472 GAAACAGATAAACAATTGGTTCATAAACCAGAGGAAACGGCATTAGAAGCCATCGGAGGA 531 Query 1044 CATGCAGTTTGTAGTAATGGAC 1065 ||||||||| ||| |||||| Sbjct 532 TATGCAGTTTAAAGTCATGGAC 553 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51008462946 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5