BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62380.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475105 jgi|Araly1|475105|fgenesh2_kg.2__235__AT1G62380.1 1845 0.0
Ahg910961 jgi|Araly1|910961|Al_scaffold_0001_1215 893 0.0
> Ahg475105 jgi|Araly1|475105|fgenesh2_kg.2__235__AT1G62380.1
Length=1305
Score = 1845 bits (999), Expect = 0.0
Identities = 1226/1330 (92%), Gaps = 37/1330 (3%)
Strand=Plus/Plus
Query 1 CACATATTTTCTCAGAATTTTATTTATTTTATTGAAAGCCAATCTCTCTCATTTGCGCCT 60
|||||||||||||| ||||||| |||||||| | ||| ||||| || |||||||||||||
Sbjct 1 CACATATTTTCTCACAATTTTAATTATTTTAATCAAATCCAATATCCCTCATTTGCGCCT 60
Query 61 ATAAATAGCAACCCTCTCTCA-TTCTACAAGTC-TCACATCAAAGCAATTAACAAATACA 118
||||||||||||||||||||| ||| | ||||| ||||||||||||||| |||| | |||
Sbjct 61 ATAAATAGCAACCCTCTCTCATTTC-ATAAGTCTTCACATCAAAGCAATAAACATACACA 119
Query 119 CAACTTGTAACTTCAAATAGATTACTTTC---Aaaga-agagagagagaaagaaagatgg 174
||||||| ||||||||||||| ||||||| ||||| ||||||||| ||||||||||||
Sbjct 120 CAACTTGCAACTTCAAATAGAGTACTTTCAAAAAAGAGAGAGAGAGAAAAAGAAAGATGG 179
Query 175 agaagaaCATGAAGTTTCCAGTAGTAGACTTGTCCAAGCTCAATGGGGAAGAGAGAGACC 234
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 180 AGAAGAACATGAAGTTTCCAGTGGTAGACTTGTCCAAGCTCAATGGTGAAGAGAGAGACC 239
Query 235 AAACCATGGCTCTAATCAATGAAGCTTGTGAGAATTGGGGCTTCTTTGAGATAGTGAACC 294
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 AAACCATGGCTTTAATCAATGAAGCTTGTGAGAATTGGGGGTTCTTTGAGATAGTGAACC 299
Query 295 ATGGATTACCACATGACTTAATGGACAAGATCGAGAAGATGACAAAGGACCATTACAAGA 354
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 ATGGATTACCACATGACTTGATGGACAAGATCGAGAAGATGACAAAGGAACATTACAAGA 359
Query 355 CATGCCAAGAACAAAAGTTCAATGACATGCTCAAGTCCAAAGGTTTGGATAATCTTGAGA 414
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 360 CATGTCAAGAACAAAAGTTCAATGATATGCTCAAGTCCAAAGGTTTGGATAATCTTCAGA 419
Query 415 CAGAAGTCGAAGATGTCGATTGGGAAAGCACTTTCTACGTTCGTCACCTCCCTCAATCCA 474
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 420 CAGAAGTCGAAGATGTTGACTGGGAAAGCACTTTCTATGTTCGTCACCTCCCTCAGTCCA 479
Query 475 ATCTCAATGACATTTCAGATGTGTCTGATGAATACAGGACGGCCATGAAAGACTTTGGTA 534
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 ATCTCAGTGACATTTCAGATGTGTCTGATGAATACAGGACGGCCATGAAAGACTTTGGGA 539
Query 535 AGAGACTGGAGAATCTTGCTGAGGATTTGTTGGATCTACTGTGTGAGAATCTAGGGTTAG 594
||||| | ||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
Sbjct 540 AGAGATTAGAGAATCTTGCAGAGGAGTTGTTGGATCTACTTTGTGAGAATCTAGGGTTGG 599
Query 595 AGAAAGGGTATTTGAAGAAAGTGTTTCATGGAACAAAAGGCCCAACCTTTGGGACAAAGG 654
||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 600 AGAAAGGGTATATGAAGAAAGTGTTTCATGGAACCAAAGGACCAACCTTTGGGACAAAGG 659
Query 655 TGAGCAATTATCCACCATGTCCTAAACCAGAGATGATCAAAGGTCTTAGGGCCCACACTG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAGCAATTATCCACCATGTCCTAAACCAGAGATGATCAAAGGTCTTAGGGCCCACACTG 719
Query 715 ATGCAGGAGGCATCATCTTGTTGTTTCAAGACGACAAGGTCAGTGGTCTCCAGCTTCTTA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGCAGGAGGCATCATCTTGTTGTTTCAAGACGACAAGGTCAGTGGTCTCCAGCTTCTTA 779
Query 775 AAGATGGTGACTGGATTGATGTTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTG 834
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAGATGGTGAGTGGATTGATGTTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTG 839
Query 835 ACCAACTTGAGGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTC 894
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 840 ACCAACTTGAGGTGATAACCAACGGGAAGTACAAGAGTGTGATGCACCGTGTGGTGACTC 899
Query 895 AACAAGAAGGAAACAGGATGTCGGTTGCATCGTTTTACAACCCGGGAAGCGATGCGGAGA 954
|||| |||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 900 AACAGGAAGGAAATAGGATGTCGATTGCATCGTTTTACAATCCGGGAAGCGATGCCGAGA 959
Query 955 TCTCACCAGCTACTTCGCTTGTCGAGAAAGATTCCGAGTACCCGAGTTTCGTCTTTGATG 1014
|||| || || ||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 TCTCTCCTGCAACTTCACTTGTCGAGAAAGATACCGAGTACCCGAGTTTCGTCTTTGATG 1019
Query 1015 ACTACATGAAGCTTTATGCAGGGGTCAAGTTTCAGCCCAAGGAGCCACGGTTCGCAGCAA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACTACATGAAGCTTTATGCAGGGGTCAAGTTTCAGCCCAAGGAGCCACGGTTCGCAGCAA 1079
Query 1075 TGAAGAATGCTTCTGCAGTTACAGAACTGAATCCTACAGCAGCCGTAGAGACTTTCTAAA 1134
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1080 TGAAGAATGCTTCTGCAGTTACAGAATTGAATCCTACAGCAGCCGTAGAGACCTTCTAAA 1139
Query 1135 AATGGATTTGAGATTCAAGTGAAGCAGAGAAAGAAAGATGAGTTTGTGTTGTGTGTTATG 1194
||||||||| || |||||||||||||||||||||| || | | | || || |
Sbjct 1140 CC-GGATTTGAGGTTTAAGTGAAGCAGAGAAAGAAAGAA-AGAA-GA-T-GAGT-TT--G 1191
Query 1195 GCAATAAGTTAAAACTTGTATTAGTGTTGATTAATTGTTGGTCAATTGGTGTGTTT---- 1250
| ||| || || || ||||||||||||||||||||||||||||||
Sbjct 1192 ----T--GTT----CT-GT----GT-TTGATTAATTGTTGGTCAATTGGTGTGTTTAAAC 1235
Query 1251 T--AAAGTGTGGGGTGTTTATGTTTATGGAAGATGATAATAATTATAAAAATCTAAATTC 1308
| ||||||||||||||||||| |||||||||||||||| ||| |||| ||||| |||||
Sbjct 1236 TTTAAAGTGTGGGGTGTTTATGCTTATGGAAGATGATAACAATAATAATAATCTGAATTC 1295
Query 1309 TAAGAGTTCT 1318
||||||||||
Sbjct 1296 TAAGAGTTCT 1305
> Ahg910961 jgi|Araly1|910961|Al_scaffold_0001_1215
Length=963
Score = 893 bits (483), Expect = 0.0
Identities = 784/928 (84%), Gaps = 26/928 (3%)
Strand=Plus/Plus
Query 171 atggagaagaaCATGAAGTTTCCAG-TAGTAGACTTGTCCAAGCTCAATGGGGAAGAGAG 229
|||||||||| ||| |||||||||| || | |||||||| ||||||||||| |||||||
Sbjct 1 ATGGAGAAGACCATTAAGTTTCCAGTTA-TCGACTTGTCTAAGCTCAATGGTAAAGAGAG 59
Query 230 AGACCAAACCATGGCTCTAATC-AATGAAGCTTGTGAGAATTGGGGCTTCTTTGAGATAG 288
|||||||||||||||| | ||| || || |||||| | || ||||||||||||||| | |
Sbjct 60 AGACCAAACCATGGCTTTGATCGAA-GATGCTTGTCAAAACTGGGGCTTCTTTGAGCTGG 118
Query 289 TGAACCATGGATTACCACATGACT-TAATGGACAAGATCGAGAAGATGACAAAGGACCAT 347
||||||||||| ||||| | || | |||||||||| || |||| |||||||||||| ||
Sbjct 119 TGAACCATGGACTACCATACGA-TCTAATGGACAACATTGAGAGGATGACAAAGGAACAC 177
Query 348 TACAAG--ACATGCCA-AGAACAAAAGTTCAATGACATGCTCAAG-TCCAAAGGTTTGGA 403
|||||| |||| | |||||||||||||| || |||||| | ||||||||||| ||
Sbjct 178 TACAAGAAACAT---ATGGAACAAAAGTTCAAAGAAATGCTC-CGTTCCAAAGGTTTAGA 233
Query 404 TAATCTTGAGACAGAAGTCGAAGATGTCGATTGGGAAAGCACTTTCTACGTTCGTCACCT 463
|| ||||||||| |||||||||||||| ||||||||||||||||||||| | || || ||
Sbjct 234 TACTCTTGAGACCGAAGTCGAAGATGTTGATTGGGAAAGCACTTTCTACCTCCGCCATCT 293
Query 464 CCCTCAATCCAATCTCAATGACATTTCAGATGTGTCTG-ATGAATACAGGA-CGGCCATG 521
||||||||| || ||| | ||||| | ||| |||| | | |||||| || ||| |||
Sbjct 294 CCCTCAATCTAACCTCTACGACATCCCTGATATGTC-GAACGAATAC-CGATTGGCAATG 351
Query 522 AAAGACTTTGGTAAGA-GACTGGAGAATCTTGCTGAGGATTTGTTGGATCTACTGTGTGA 580
|| || ||||| |||| | |||||||||| || || || | |||||| | |||||||
Sbjct 352 AAGGATTTTGGAAAGATG-GTGGAGAATCTAGCAGAAGAGCTATTGGATTTGTTGTGTGA 410
Query 581 GAATCTAGGGTTAGAGAAAGGGTATTTGAAGAAAGTGTTTCATGGAACAAAAGGCCCAAC 640
||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct 411 GAACCTAGGGTTGGAGAAAGGGTACTTGAAGAAGGTGTTTCATGGGACAAAGGGCCCAA- 469
Query 641 CTTT-GGGACAAAGGTGAGCAATTATCCACCATGTCCTAAACCAGAGATGATCAAAGGTC 699
|||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 470 CTTTCGGGACAAAGGTTAGCAACTATCCACCATGTCCTAAACCGGAGATGATCAAAGGGC 529
Query 700 TTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTGTTTCAAGACGACAAGGTCAGTG 759
||||||| ||||| |||||||||||| | || ||| ||||||||||||| ||||||||||
Sbjct 530 TTAGGGCTCACACAGATGCAGGAGGCCTTATTTTGCTGTTTCAAGACGATAAGGTCAGTG 589
Query 760 GTCTCCAGCTTCTTAAAGATGGTGACTGGATTGATGTTCCTCCTCTCAACCACTCTATTG 819
|||| |||||||| ||||||||||| ||| ||||||||||||||||||| || || ||||
Sbjct 590 GTCTTCAGCTTCTAAAAGATGGTGATTGGGTTGATGTTCCTCCTCTCAAGCATTCCATTG 649
Query 820 TCATCAATCTTGGTGACCAACTTGAGGTGATAACCAACGGGAAGTATAAGAGTGTGCTGC 879
||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 650 TCATCAACCTTGGTGACCAACTTGAGGTGATAACAAACGGGAAGTACAAGAGTGTAATGC 709
Query 880 ACCGTGTGGTGACTCAACAAGAAGGAAACAGGATGTCGGTTGCATCGTTTTACAACCCGG 939
|||||||| |||| ||| ||||||||||||||||||| |||| ||||| |||||||| |
Sbjct 710 ACCGTGTGATGACCCAAAAAGAAGGAAACAGGATGTCTATTGCGTCGTTCTACAACCCCG 769
Query 940 GAAGCGATGCGGAGATCTCACCAGCTACTTCGCTTGTCGAGAAAGATTCCGAGTACCCGA 999
|||||||||| || ||||| || || || || ||||| || ||||| || | ||||| |
Sbjct 770 GAAGCGATGCCGAAATCTCTCCGGCAACATCTCTTGTGGATAAAGACTCAAAATACCCAA 829
Query 1000 G-TTTCGTCTTTGATGACTACATGAAGCTTTATGCAGGGGTCAAGTTTCAGCCCAAGGAG 1058
| ||| || ||||||||||||||||| || ||||| || ||||||||||||||||||||
Sbjct 830 GCTTT-GTGTTTGATGACTACATGAAACTCTATGCCGGACTCAAGTTTCAGCCCAAGGAG 888
Query 1059 CCACGGTTCGCAG-CAATGAAGAATGCT 1085
|||||||||| || | |||||||| |||
Sbjct 889 CCACGGTTCG-AGGCGATGAAGAACGCT 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5