BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62390.1
Length=2835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475104 jgi|Araly1|475104|fgenesh2_kg.2__234__AT1G62390.1 3976 0.0
> Ahg475104 jgi|Araly1|475104|fgenesh2_kg.2__234__AT1G62390.1
Length=2585
Score = 3976 bits (2153), Expect = 0.0
Identities = 2395/2509 (95%), Gaps = 27/2509 (1%)
Strand=Plus/Plus
Query 1 GAGCTAGGGTTTCTAGTTTTTCAAAACCCCGTCAGGCTCATCTTCTTCTAGCACCTTCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGCTAGGGTTTCTAGTTTTTCAAAACCCCGTCAGGCTCATCTTCTTCTAGCACCTTCTT 60
Query 61 CTTCCCTTAAAGTATTCAACTTTATCTGAATTTGACCATTTTCTCTTCATTTCTCCGACT 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 61 CTTCCCTTAAAGTATTCAACTTTATCTGAATTTCACCATTTTCTCTTCATTTCT-C--CT 117
Query 121 AATTTCCCTTCATTTCGATCTTTAAGCATCTGGGTATCTCCCTTTCTCCATCTATTCATC 180
| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 -A-----C-TAATTTCGATCTTTAAGCATCTGGGTATCTCCCTTTCTCCATCTATTCATC 170
Query 181 GGAATTTGCGCTTAGATTTTGAATATTTTGAAGCtttttttGGGATAGAGGAGATTGAAA 240
|||||||| |||||||||| ||| ||| |||||| ||||| |||| ||| ||||||||||
Sbjct 171 GGAATTTGGGCTTAGATTTCGAA-ATTCTGAAGC-TTTTTGGGGA-AGACGAGATTGAAA 227
Query 241 ATGGGGAAATCTGGAGGAAGGAAGAAGAAGA------GTGGTGG-T----T-CGAATTCG 288
||||||||||||||||||||||||||||||| ||||||| | | ||||||||
Sbjct 228 ATGGGGAAATCTGGAGGAAGGAAGAAGAAGAGTGGTGGTGGTGGTTCGAATGCGAATTCG 287
Query 289 AATTCGAGTCAAGTCAATTCATCTGAAACTTCAGGATTATCCAAACCGTCAACGATTGTT 348
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 288 AATTCGAGTCAAGTCAATTCATCTGAAGCTTCAGGATTATCGAAACCGTCAACGATTGTT 347
Query 349 AATGGTGGTGTTGATTTCGATGCTTCGATATTCTTGAAACGTGCACATGAGCTTAAGGAA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AATGGTGGTGTTGATTTCGATGCTTCGATATTCTTGAAACGTGCACATGAGCTTAAGGAA 407
Query 409 GAAGGTAATAAAAAGTTTCAAGCAAGAGATTACGTTGGTGCTCTTGAACAATACGAGAAT 468
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 408 GAAGGTAATAAAAAGTTTCAAGCAAGAGATTATATTGGTGCTCTTGAGCAATACGAGAAT 467
Query 469 GGTATTAAGCTTATTCCTAAGAGTCATCCAGATAGAGCTGTGTTTCATAGCAATAGAGCT 528
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 468 GGGATTAAGCTTATTCCTAAGAATCATCCAGATAGAGCTGTGTTTCATAGCAATAGAGCT 527
Query 529 GCTTGTTTGATGCAGATGAAACCAATTGATTATGAATCTGTGATTTCTGAATGTTCAATG 588
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 528 GCTTGTTTGATGCAAATGAAGCCAATTGATTATGAATCTGTGATTTCTGAATGTTCTTTG 587
Query 589 GCTCTTAAATCTCAGCCTGGTTTTACTCGTGCTTTGCTTAGAAGAGCTAGAGCTTTTGAA 648
||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 588 GCTCTTAAATCTCAGCCTGGTTTTACTAGAGCTTTACTTAGAAGAGCTAGAGCTTTTGAA 647
Query 649 GCTGTTGGCAAGTTTGATTTAGCTGTTCAGGATGTTAATGTTTTGTTGGGTTCTGATCCT 708
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 648 GCTGTTGGCAAGTTTGATTTAGCTGTTCAGGATGTCAATGTTTTGTTGGGTTCTGATCCT 707
Query 709 AATCATAAGGATGCTGGTGAGATTTCGAAGCGGTTAAAAACTGCTTTGGGTCCTCACCAA 768
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 708 AATCATAAGGATGCTGGTGAGATTTCCAAGCGGTTAAAAACCGCTTTGGGTCCTCATCAA 767
Query 769 GATTTGCAGAGCCGTCCTTCACCTGCAGCTCTTGGTGCTTCGGCTGCTTTAGGCGGTCCT 828
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 768 GATTTGCAGAGTCGTCCTTCACCTGCAGCTCTTGGTGCTTCGGCTGCGTTAGGCGGTCCG 827
Query 829 ATTGCTGGACTTGGTCCTTGTTTGCCTTCTCGTAATGTTCATAAAAAGGGAGTTACTTCG 888
||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 828 ATTGCTGGACTTGGTCCTTGTTTACCTTCTCGTAATGTTCATAAAAAGGGTGTTGCTTCG 887
Query 889 CCTGTTGGGTCTGTTTCGTTGCCTAATGCTAGTAATGGTAAGGTTGAGAGGCCACAGGTG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 888 CCTGTTGGGTCTGTTTCGTTGCCTAATGCTAGTAATGGTAAGGTTGAGAGGCCCCAGGTG 947
Query 949 GTGAATCCTGTGACTGAAAATGGTGGTTCGGTGAGTAAGGGACAGGCGTCGAGAGTTGTG 1008
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 948 GTGAATCCTGTGACTGAAAATGGCGGTTCAGTGAGTAAGGGACAGGCGTCGAGAGTTGTG 1007
Query 1009 TTGAAGCCGGTTAGTCATTCGCCAAAAGGGTCGAAGGTTGAGGAGTTGGGTTCTTCTTCT 1068
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct 1008 TTGAAGCCGGTTAGTCATTCACCGAAAGGGTCGAAGGTGGAGGAGTTGGGTTCTTCATCT 1067
Query 1069 GTGGCGGTTGTTGGGAAGGTTCAAGAGAAGAGGATTCGGTGGAGGCCGTTGAAGTTTGTT 1128
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GTGGCTGTTGTTGAGAAGGTTCAAGAGAAGAGGATTCGGTGGAGGCCGTTGAAGTTTGTT 1127
Query 1129 TATGACCATGACATAAGGTTGGGTCAGATGCCTGTGAACTGTAGGTTTAAGGAATTGAGA 1188
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TATGATCATGACATAAGGTTGGGTCAGATGCCTGTGAACTGTAGGTTTAAGGAATTGAGA 1187
Query 1189 GAGATTGTGAGCAGTCGTTTCCCGTCTTCAAAGGCGGTTTTGATTAAGTACAAGGACAAT 1248
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1188 GAGATTGTGAGCAGTCGTTTCCCGTCTTCGAAGGCGGTTTTGATTAAGTACAAGGACAAT 1247
Query 1249 GACGGAGATTTGGTGACTATAACTTCTACTGCAGAGCTGAAATTGGCGGAATCTGCTGCT 1308
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GATGGAGATTTGGTGACTATAACTTCTACTGCAGAGCTGAAATTGGCGGAATCTGCTGCT 1307
Query 1309 GATTGTATTTTGACGAAAGAGCCTGATACTGATAAGTCTGATTCTGTTGGGATGTTGAGA 1368
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1308 GATAGTCTTTTGACGAAAGAGCCTGATACTGATAAGTCTGATTCTGTTGGGATATTGAGA 1367
Query 1369 TTGCATGTTGTTGATGTGAGTCCTGAGCAAGAGCCGATGTTGCTCGAGGAAGAAGAGGAG 1428
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1368 TTGCATGTTGTTGATGTGAGTCCTGAGCAAGAGCCGATGTTGCTAGAGGAAGAAGAGGAG 1427
Query 1429 GAAGTGGAAGAGAAGCCTGTTATAGAAGAAGTCATATCATCTCCTACAGAATCACTATCG 1488
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1428 GAAGTGGAAGAGAAGCCTGTTGTAGAAGAAGTCATATCATCTCCTACAGAATCAGTATCT 1487
Query 1489 GAAACAGAGATCAACACTGAGAAGACAGATAAGGAAGTTGAAAAGGAGAAAGCAAGTTCT 1548
|||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1488 GAAACAGAGATCAACAATGAGAAGACGGATAAGGAAGTTGAAAAGGAGAAAGCGGGTTCT 1547
Query 1549 TCTGAAGATCCTGAGACCAAGGAATTGGAGATGGACGACTGGTTGTTTGATTTTGCTCAT 1608
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1548 TCTGAAGATCCTGAGACCAAGGAATTGGAGATGGATGATTGGTTGTTTGATTTTGCTCAT 1607
Query 1609 CTGTTCCGTACTCATGTCGGTATTGACCCTGATGCTCATATTGATTTACATGAGTTGGGA 1668
|| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1608 CTCTTCCGTACTCATGTTGGTATTGACCCTGATGCTCATATTGACTTGCATGAGTTGGGA 1667
Query 1669 ATGGAGCTTTGCTCAGAGGCGCTTGAAGAAACTGTGACAAGCGAGAAAGCTCAACCACTA 1728
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 ATGGAGCTCTGCTCAGAGGCGCTTGAAGAAACTGTGACAAGCGAGAAAGCTCAACCACTA 1727
Query 1729 TTCGATAAAGCTTCTGCGAAATTCCAAGAAGTCGCTGCTTTAGCTTTCTTTAACTGGGGA 1788
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1728 TTCGATAAAGCTTCTGCGAAATTCCAAGAAGTCGCTGCTTTAGCTTTCTTCAACTGGGGA 1787
Query 1789 AATGTTCACATGTGTGCCGCTAGAAAGAGGATTCCTTTAGACGAATCTGCGGGAAAAGAA 1848
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1788 AATGTTCACATGTGTGCTGCTAGAAAGAGGATTCCTTTAGACGAATCTGCAGGAAAAGAA 1847
Query 1849 GTGGTTGCTGCACAACTTCAAACCGCTTACGAGTGGGTGAAAGAGAGATACACATTGGCA 1908
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 GTGGTTGCAGCACAGCTTCAAACCGCTTACGAGTGGGTGAAAGAGAGATACACATTGGCC 1907
Query 1909 AAGGAGAAATATGAACAGGCTCTCTCGATCAAACCAGATTTTTACGAAGGTTTGCTTGCG 1968
|||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1908 AAGGAGAAATATGAGCAGGCCCTCTCTATCAAACCAGATTTTTACGAGGGTTTGCTTGCT 1967
Query 1969 TTAGGACAGCAGCAATTTGAAATGGCGAAGCTACACTGGTCTTACTTGCTAGCTCAGAAG 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TTAGGACAGCAGCAATTTGAAATGGCGAAGCTACACTGGTCTTACTTGCTAGCTCAGAAG 2027
Query 2029 ATCGATATCTCAGGTTGGGATCCGTCGGAAACCCTAAATCTCTTTGACAGTGCAGAGGCG 2088
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 2028 ATCGATATCTCAGGTTGGGATCCGTCGGAAACCTTAAATCTCTTTGACAGCGCAGAGGCA 2087
Query 2089 AAGATGAAAGATGCTACAGAGATGTGGGAGAAGCTTGAAGAGCAGAGGATGGATGAT-TT 2147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2088 AAGATGAAAGATGCTACAGAGATGTGGGAGAAGCTTGAAGAGCAGAGGATGGATGATCTT 2147
Query 2148 AAAAAACCCGAACTCGAACAAGAAAGAGGAAGTTTCAAAGAGGAGAAAGAAGCAAGGAGG 2207
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2148 AAAAA-CCCGAACTCGAACAAGAAAGAGGAAGTTTCTAAGAGGAGAAAGAAGCAAGGAGG 2206
Query 2208 AGATGGGAATGAAGAGGTTTCAGAGACAATCACAGCTGAGGAAGCAGCAGAACAAGCGAC 2267
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2207 AGATGGGAGTGAAGAGGTTTCAGAAACAATCACAGCTGAGGAAGCAGCAGAACAAGCGAC 2266
Query 2268 TGCAATGAGATCACAGATCCATCTGTTTTGGGGAAACATGCTGTTCGAAAGATCGCAAGT 2327
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2267 TGCAATGAGATCACAGATCCATTTGTTTTGGGGAAACATGCTGTTCGAAAGATCGCAAGT 2326
Query 2328 TGAATGCAAAATCGGGAAGGATGGTTGGAATAAGAATCTTGATTCAGCTGTTGAAAGATT 2387
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 TGAATGCAAAATCGGGAGGGATGGTTGGAATAAGAATCTTGATTCAGCTGTTGAAAGATT 2386
Query 2388 CAAACTTGCAGGTGCTTCTGAAGCTGACATAGCAACAGTTGTCAAGAACCATTGTTCCAA 2447
||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 2387 CAAACTTGCAGGTGCTTCTGAAGCTGACATAGCAATGGTCGTCAAGAATCATTGTTCCAA 2446
Query 2448 TGAAGCCGCTGCTACCGAAGGAGATGAGAAAAAGGTACCTGCGCCTTGA 2496
||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2447 TGAAGTCGCTGCTACTGAAGGAGATGAGAAAAAGGTACCTGCACCTTGA 2495
Score = 139 bits (75), Expect = 1e-31
Identities = 85/90 (94%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 2746 TTGTTTTTGCATTAGTGATTGATTCTTCTGAACTTCCTTCTTCTTCTTTAATGATAAAAG 2805
|||||||||| |||| ||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 2496 TTGTTTTTGCTTTAGGGATTGATTCTTCTGAACTTGCTTCTTCTTATCTAATGATAAAAG 2555
Query 2806 CTACTTTAGCTTCATTTGTGTTAAGTTCTG 2835
||||||||||||||||||||||||||||||
Sbjct 2556 CTACTTTAGCTTCATTTGTGTTAAGTTCTG 2585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106995498205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5