BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62400.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475103 jgi|Araly1|475103|fgenesh2_kg.2__233__AT1G62400.1 1714 0.0
> Ahg475103 jgi|Araly1|475103|fgenesh2_kg.2__233__AT1G62400.1
Length=1065
Score = 1714 bits (928), Expect = 0.0
Identities = 1004/1042 (96%), Gaps = 0/1042 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAAGAGATTTGACAGTATGGAATCTTGGTCGATGATCCTCGAGTCCGAGAAC 60
||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGAAGAAGAGATTCGACAGTGTGGAATCTTGGTCGATGATCCTTGAGTCCGAGAAC 60
Query 61 GTGGAGACATGGGAAGCTTCTAAAGGCGAAAGAGAGGAATGGACCGCAGATCTTTCGCAG 120
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTGGAGACATGGGAAGCGTCTAAAGGAGAAAGAGAGGAATGGACCGCAGATCTTTCGCAG 120
Query 121 CTATTTATCGGAAACAAATTTGCTTCCGGAGCACACTCTAGAATATACAGAGGGATCTAC 180
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 121 CTATTTATCGGAAACAAATTTGCTTCCGGAGCACACTCTCGAATTTACAGAGGGATCTAC 180
Query 181 AAACAAAGAGCCGTTGCCGTGAAGATGGTGAGGATCCCAACACACAAGGAAGAGACAAGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAACAAAGAGCCGTTGCCGTGAAGATGGTGAGGATCCCAACACACAAGGAAGAGACAAGG 240
Query 241 GCTAAGCTTGAACAACAGTTTAAGTCCGAGGTTGCTCTGCTTTCTCGTCTCTTTCACCCT 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTAAGCTCGAACAACAGTTTAAGTCCGAGGTTGCTCTGCTTTCTCGTCTCTTTCACCCT 300
Query 301 AACATCGTTCAGTTCATTGCGGCGTGCAAGAAACCGCCGGTGTACTGCATTATAACAGAG 360
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 301 AACATCGTTCAGTTCATTGCGGCGTGCAAGAAACCGCCCGTATACTGCATCATAACAGAG 360
Query 361 TACATGTCACAAGGAAACCTCCGAATGTACCTAAACAAGAAAGAGCCTTACTCGCTTTCG 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TACATGTCACAAGGAAATCTCCGAATGTACCTAAACAAGAAAGAGCCTTACTCGCTCTCT 420
Query 421 ATCGAGACCGTACTAAGGCTGGCTCTAGACATCTCAAGAGGAATGGAGTATCTTCACTCG 480
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCGAGACCGTACTTAGACTGGCTCTAGACATCTCAAGAGGAATGGAGTATCTTCACTCG 480
Query 481 CAAGGTGTTATCCACAGAGACCTAAAGTCCAACAATTTGCTTTTGAACGACGAGATGAGA 540
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 481 CAGGGTGTTATCCACAGAGACCTAAAGTCCAACAATTTGCTTTTGAATGATGAGATGAGA 540
Query 541 GTTAAAGTTGCAGACTTTGGGACATCTTGTCTTGAGACGCAATGCAGAGAGGCCAAGGGT 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTAAAGTTGCAGACTTTGGGACTTCTTGTCTTGAGACGCAATGCAGAGAGGCCAAGGGT 600
Query 601 AACATGGGAACTTATAGATGGATGGCTCCAGAGATGATCAAGGAGAAGCCTTATACCAGA 660
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 601 AACATGGGAACTTATAGATGGATGGCTCCAGAGATGATCAAAGAGAAGCCTTATACTAGA 660
Query 661 AAAGTCGATGTTTATAGCTTTGGCATCGTTCTATGGGAACTCACCACCGCGTTGCTTCCG 720
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 661 AAAGTCGATGTTTATAGCTTTGGCATCGTTCTATGGGAACTTACCACTGCGTTGCTACCG 720
Query 721 TTCCAAGGCATGACTCCTGTGCAAGCCGCATTCGCAGTCGCTGAAAAGAACGAAAGACCA 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 TTCCAAGGCATGACTCCCGTGCAAGCCGCATTCGCAGTCGCTGAAAAGAACGAGAGACCA 780
Query 781 CCATTGCCGGCGAGCTGTCAACCAGCGCTAGCTCATCTAATCAAGAGGTGTTGGTCAGAG 840
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 781 CCATTGCCGGCGAGCTGTCAACCCGCGCTAGCTCACCTAATCAAGAGATGTTGGTCAGAG 840
Query 841 AATCCGTCGAAGCGGCCAGACTTCTCAAACATAGTGGCGGTGCTAGAGAAGTACGACGAG 900
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 841 AATCCGTCGAAGCGGCCAGACTTCTCAAATATAGTGGCTGTGCTAGAGAAGTACGACGAG 900
Query 901 TGTGTCAAAGAAGGACTGCCTTTGACGTCACACGCAAGCCTAACGAAGACAAAGAAAGCT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 TGTGTCAAAGAAGGACTGCCTTTGACGTCACACGCAAGCCTAACGAAGACAAAGAACGCG 960
Query 961 ATTCTTGATCACCTTAAAGGCTGTGTCACATCCATTAGCTCACCATTTTCTTCCTCCTCT 1020
|||||||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 961 ATTCTTGATCGCCTTAAAGGCTGTGTCTCATCCATAAGCTCACCATTTTCTTCATCCTCT 1020
Query 1021 GTTCCTGTAAATGCCTAGTAGT 1042
||||||||||||||||||||||
Sbjct 1021 GTTCCTGTAAATGCCTAGTAGT 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5