BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62410.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924757 jgi|Araly1|924757|scaffold_200318.1 627 4e-179
Ahg338140 jgi|Araly1|338140|fgenesh1_pg.C_scaffold_2000239 322 2e-87
Ahg495887 jgi|Araly1|495887|fgenesh2_kg.8__1703__AT5G57870.1 254 8e-67
> Ahg924757 jgi|Araly1|924757|scaffold_200318.1
Length=856
Score = 627 bits (339), Expect = 4e-179
Identities = 503/579 (87%), Gaps = 24/579 (4%)
Strand=Plus/Plus
Query 32 AGCGTTTGACAACCCTTATTTTCGACAAAGCAGTCCTTGAGCCGACCTTTTGCCCTATGT 91
||||| ||||| |||||||| |||||||||| |||||||| ||||||||| |||||||
Sbjct 211 AGCGTGTGACATCCCTTATTGTCGACAAAGCTGTCCTTGA---GACCTTTTGTCCTATGT 267
Query 92 ACGCTCAATTGTGCTT-TGATATCCGCCACAAAATGCCTAGGTTTCCACCTTCAGCGCCT 150
||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| ||||
Sbjct 268 ACGCTCAATTGTG-TTGTGATATCCACGACAAAATGCCTAGTTTTCCACCTTCAGAGCCT 326
Query 151 AAGACTGATGAGATCTCA-TTC-AAGAGGGTTTTGCTGAACACATGTCAAAAGGTGTTTG 208
| ||||| |||||||||| ||| || | |||||||||||| ||||||||||| |||||||
Sbjct 327 ATGACTGGTGAGATCTCATTTCGAA-A-GGTTTTGCTGAATACATGTCAAAATGTGTTTG 384
Query 209 AGAGAACTGACGACTTAAGTGAGGAGATTAGAAAGATGAACGCGCCAGATCAGGAGGCCG 268
|| |||| ||||| || ||||||||||||||||| ||||| |||| ||||||| |||| |
Sbjct 385 AGGGAACAGACGAGTTGAGTGAGGAGATTAGAAACATGAATGCGCTAGATCAGAAGGCAG 444
Query 269 AACGGGAAGACGAAGTAAGACTGTTGAACCTCCGGACTCTAGGAAATCTTCGTTTTTG-T 327
||||||||||| |||||| ||||| ||||||||||||||||||||||||||| ||| | |
Sbjct 445 AACGGGAAGACAAAGTAAAACTGTCGAACCTCCGGACTCTAGGAAATCTTCG-TTTGGTT 503
Query 328 GGTGAGCtttttttGAA-GCGG-A--TGTTGACAGAAAAGGTTGTTTT-AGCCATTGGTC 382
|||||||||||| | || |||| | || ||| |||||| ||||||| | ||||| ||
Sbjct 504 GGTGAGCTTTTTCT-AACGCGGAAGCTGATGATAGAAAATATTGTTTTCA-ACATTGTTC 561
Query 383 AGAAGCTTTTGGAGGATGCTGAGCAAATGTGTCCATCAGAGGAAAAAATTATAGCTATTT 442
||||||||||||||||||||||| ||||| |||||||||||| | ||||| |||||||||
Sbjct 562 AGAAGCTTTTGGAGGATGCTGAGAAAATGGGTCCATCAGAGGGACAAATTGTAGCTATTT 621
Query 443 GTCTCTTTCTCAACACTGTTGGCAAAAAGC--T-TGATTC-A--TTGAACTCAAAACTGA 496
|||||||||||||||||||| ||||||||| | ||| || | ||||||||||||| ||
Sbjct 622 GTCTCTTTCTCAACACTGTTAGCAAAAAGCTATATGAATCAAGGTTGAACTCAAAACAGA 681
Query 497 TGAACGAGATTTTAAGACGTTTAAAGAATCTGTCAAATCATCCTCAATTGGTTATGAGCT 556
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 682 TGAACGAGATTTTCAGACGTTTAGAGAATCTGTCAAATCATCCTCAATTGGTTATAAGCA 741
Query 557 TAAGATTAATGGTTGGGAAGATCATCCATTTGCACTCCA 595
| |||| |||||| ||| || ||||||||||||||||
Sbjct 742 TGCGATTTATGGTTCAGAATATGATCCATTTGCACTCCA 780
> Ahg338140 jgi|Araly1|338140|fgenesh1_pg.C_scaffold_2000239
Length=705
Score = 322 bits (174), Expect = 2e-87
Identities = 368/456 (81%), Gaps = 35/456 (8%)
Strand=Plus/Plus
Query 32 AGCGTTTGACAACCCTTATTTTCGACAAAG-CAGTCCTTGAGCCGACCTTTTGCCCTATG 90
||||| ||||||||||||||||| |||||| || ||||||||||||| |||||||| |||
Sbjct 80 AGCGTGTGACAACCCTTATTTTCAACAAAGCCA-TCCTTGAGCCGACATTTTGCCCGATG 138
Query 91 TACGCTCAATTGTGCTTTGATATCCGCCACAAAATGCCTAGGTTTCCACCTTCAGCGCCT 150
||||||||||| ||| |||||| | ||| |||||| | |||||| | ||
Sbjct 139 TACGCTCAATTAAGCTGCGATATCTGTGACAGAATGCCGACTTTTCCA---T------CT 189
Query 151 AAGACTGATGAGATCTCATTCAAGAGGGTTTTGCTGAACACA-TGTCAAAAGGTGTTTGA 209
|| | | | ||| |||||||||||||||||||||| ||| | |||||| ||||||||
Sbjct 190 -AG--T-A--AAATCACATTCAAGAGGGTTTTGCTGAATACAAT-TCAAAATGTGTTTGA 242
Query 210 GAGAACTGACGACTTAAGTGAGGAGATTAGAAAGATGAACGCGCCAGATCAGGAGGCCGA 269
| |||| || || ||||| || |||||||||||||||||| ||||||||||| ||| ||
Sbjct 243 GGGAACCGATGAATTAAGCGATGAGATTAGAAAGATGAACTCGCCAGATCAGAAGGAAGA 302
Query 270 ACGG-GAAGACGAAGTAA-GACTGT-TGAACCTCCGGACTCTAGGAAATCTTCGTTTTTG 326
|||| || ||| | | || | ||| | ||| |||| |||||||||||||||||||||||
Sbjct 303 ACGGAGA-GAC-ATGGAAAGGTTGTCTAAAC-TCCGAACTCTAGGAAATCTTCGTTTTTG 359
Query 327 TGGTGAGCtttttttGAAGCGGATG-TTGACAGAAAAGGTTGTTTTAGC-CATTGGTCAG 384
||||||||| ||||| ||||||| | || |||||||| ||||| | | ||||| ||||
Sbjct 360 TGGTGAGCTATTTTTAAAGCGGAAGATTC-CAGAAAAGATTGTTC-ACCACATTGTTCAG 417
Query 385 -AAGCTTTTGGAGGATGCTGAGCAAATGTGTCCATCAGAGGAAAAAATT-ATAGCTATT- 441
|| ||| ||| || || |||| |||||||||||||||||||||| || | ||| | |
Sbjct 418 GAA-CTTCTGGGGGCTGATGAGAAAATGTGTCCATCAGAGGAAAACCTTGA-AGC-AGTC 474
Query 442 TGTCTCTTTCTCAACACTGTTGGCAAAAAGCTTGAT 477
|||||||||||||| ||||| |||||||||||||||
Sbjct 475 TGTCTCTTTCTCAAGACTGTCGGCAAAAAGCTTGAT 510
> Ahg495887 jgi|Araly1|495887|fgenesh2_kg.8__1703__AT5G57870.1
Length=2916
Score = 254 bits (137), Expect = 8e-67
Identities = 438/579 (76%), Gaps = 38/579 (7%)
Strand=Plus/Plus
Query 43 ACCCTTATTTTCGACAAAGCAGTCCTTGAGCCGACCTTTTGCCCTATGTACGCTCAATTG 102
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 995 ACCCTTATTTTTGACAAAGCTGTCCTTGAGCCGACCTTTTGCCCTATGTACGCAAAATTG 1054
Query 103 TGCTTTGATATCCGCCACAAAATGCCTAGGTTTCCACCTTCAGCGCCTAAG-ACTGATGA 161
|||| ||||||| | |||| |||| | || |||||| ||| |||| | | | | ||
Sbjct 1055 TGCTCTGATATCAACAACAAGCTGCCCACCTTCCCACCTGCAGAGCCTGGGGA-TAAGGA 1113
Query 162 GATCT-CATTCAAGAGGGTTTTGCTGAACA-CATGTCAAAAGGTGTTTGAGAGAACTGAC 219
||| | |||| ||||||||| | ||||| | | |||||| ||| |||||| | || |
Sbjct 1114 GAT-TACATTTAAGAGGGTTCTACTGAATATC-TGTCAAGAGGCATTTGAGGGCGCTTCC 1171
Query 220 GACTTAAGTGAGGAGATTAGAAAGATGAACGCGCCAGATCAGGAGGCCGAACGGGAA-GA 278
| || || |||||| ||||| |||||| || |||||||||||||| || ||| || ||
Sbjct 1172 CAGTTGAGGGAGGAGCTTAGACAGATGAGTGCTCCAGATCAGGAGGCTGAGCGG-AATGA 1230
Query 279 CGAAGTAAGACTGTTGAACCTCCGGACTCTAGGAAATCTTCGTTTT-TGTGGTGAGCttt 337
| ||| || | ||||||| ||| ||||||||||||| ||||||| | |||||||||||
Sbjct 1231 CAAAGAAAAATTGTTGAAGCTCAAGACTCTAGGAAATATTCGTTTGAT-TGGTGAGCTTT 1289
Query 338 ttttGAAGCGGATG-TTGACAGAAAAGGTTGTTTTAGC-CATTGGTCA-GAAGCTT-TTG 393
| | || |||| || |||||||| ||||| | | ||||| | | | ||||| |||
Sbjct 1290 TAAAGCAGAAGATGGTTC-CAGAAAAGATTGTTC-ATCACATTG-TAAAGGAGCTTCTTG 1346
Query 394 GAGGATGCTGAGCAAA-TGTGTCCATCAGAGGAAAAAATT-ATAGCTATTTGTCTCTTTC 451
| || | |||| ||| | |||||| |||||||||| | | ||||||||||| ||||
Sbjct 1347 G-GGCCGATGAG-AAAGTTTGTCCAGCAGAGGAAAATGTCGA-AGCTATTTGTCA-TTTC 1402
Query 452 T-CAACACTGTTGGCAAA-AAGCTTGATTCAT---TGAACTCAAAACTGATGAACGA-G- 504
| ||| || |||||||| || ||||| | |||| ||||||| ||| || || |
Sbjct 1403 TTCAAAACAATTGGCAAACAA-CTTGACGGAAACGTGAAGTCAAAACGGATTAATGATGT 1461
Query 505 AT-TTT-AAGACGTTTAAAGAATCTGTCAAATCATCCTCAATTGGTTA-TGAG-CTTAAG 560
|| ||| || ||| || || |||||||||| ||||||| |||| | || | || | |
Sbjct 1462 ATATTTCAA-ACGCCTACAGGATCTGTCAAAGAATCCTCAGTTGGA-ACTGCGTCTGA-G 1518
Query 561 ATTAATGGTTGGGAAGATCATCCATTTGCACTCCATTGG 599
||| |||||| ||| |||||| | ||| ||||| |||
Sbjct 1519 ATTCATGGTTCAGAATATCATCGACATGCGCTCCAATGG 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5