BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62420.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475101 jgi|Araly1|475101|fgenesh2_kg.2__231__AT1G62420.1 1254 0.0
> Ahg475101 jgi|Araly1|475101|fgenesh2_kg.2__231__AT1G62420.1
Length=929
Score = 1254 bits (679), Expect = 0.0
Identities = 825/896 (92%), Gaps = 8/896 (1%)
Strand=Plus/Plus
Query 11 AAAAAGATTTTATCAAAAGGACAAAAGAAAGAGATGGTTGAGATTCAGGGAAGATTCAAA 70
|||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 1 AAAAAGATTTTATCAAAAGGAC-AAAGAAAGAGATGGTTGAGATCCAGGCAAGATTCAAG 59
Query 71 AGAATTGAGTCGGCTTTCAACGTAGCCGCGGCTCGTGTACATCC-ACCGTGTGATAACAG 129
||| |||||||||||||||||||||| ||||| ||||||| ||| | |||||||||| ||
Sbjct 60 AGAGTTGAGTCGGCTTTCAACGTAGCGGCGGCGCGTGTACGTCCGA-CGTGTGATAATAG 118
Query 130 TAGCGGAAGCGATCATTCGCCGGATCTTTCCGATTTGGTCGCATCTTTTATAGAGAAAGA 189
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 119 TAGCGGAAGCGATCATTCGCCGGATCTTTCGGATTTGGTCGCATCTTTTATGGAGAAAGA 178
Query 190 GGGACAAATAGTATTACGTGAAGAAGAAGAAACTTCTTCCGACGATAACAATTTGGAAGA 249
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 179 AGGACAAATAGTATTACGTGAGGAAGAAGAAACTTCTTCCGACGATAATGATTTGGAAGA 238
Query 250 TGTGAATGAGAGGTTACGGAAGCTTCTAGAAGGTTTATCCTGTGGCGAAGAGCGGATGAG 309
|||||| |||||||||||||||||| |||||||||| ||| | ||||||||||||| |||
Sbjct 239 TGTGAAGGAGAGGTTACGGAAGCTTTTAGAAGGTTTGTCCGGCGGCGAAGAGCGGAGGAG 298
Query 310 AATACTGTCAGCGACGATGGAGGTTGCTGGAACGTTCGTCGGAGATATTAGTTCTTCTAA 369
| || || | || | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 AGTAATGACGGCTATGATGGAGGTTGCTGGAACGTTCGTCGGAGATATTAGTTCTCCTAA 358
Query 370 GCGTCACTTAATGGCGTTTCTACGTAACAAGGGTTTTGATGCAGGTCTTTGCAAGTCGAG 429
|||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 GCGTCAATTGATGGTGTTTCTACGTAACAAGGGTTTTGATGCAGGTCTTTGCAAGTCAAG 418
Query 430 TTGGGAAAGATTCGGCAAAAACACCGGCGGAAAATACGAGTACGTCGACGTTCGTTGTGG 489
|||||| ||||||||||| |||||||||||||||||||||||||||||| |||| || ||
Sbjct 419 TTGGGAGAGATTCGGCAAGAACACCGGCGGAAAATACGAGTACGTCGACATTCGATGCGG 478
Query 490 CGGAGATTATAATAATCGGTATT-TCGTCGAGACAAACCTTGCCGGAGAGTTTGAGATAG 548
||||| || ||||||||| || |||| ||||||||||| |||||||| ||||||||||
Sbjct 479 CGGAG---ATCATAATCGGT-TTATCGTGGAGACAAACCTAGCCGGAGAATTTGAGATAG 534
Query 549 CTAGACCAACGAAAAGGTACCTCTCAATACTAAGCCAAGTGCCACGCGTCTTCGTGGGAA 608
|| ||||||||||||||||||| |||||||||| |||||| |||| ||||||||||| |
Sbjct 535 CTCGACCAACGAAAAGGTACCTTTCAATACTAAACCAAGTACCACATGTCTTCGTGGGGA 594
Query 609 CTTCAGAGGAACTGAAACTGCTCGTGAGAATCATGTGCCATGAGATGAGACGGTCGATGA 668
|||| ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 595 CTTCGGAGGAGCTGAAACTGCTTGTGAGGATCATGTGCCACGAGATGAGACGGTCGATGA 654
Query 669 AGCACGTAGGGATCCACGTGCCACCGTGGAGGAGAAACGGTTACATGCAAGCTAAGTGGT 728
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGCACGTAGGTATGCACGTGCCACCGTGGAGGAGAAACGGTTACATGCAAGCTAAGTGGT 714
Query 729 TCGGTTTCTATAAACGAACTTCGACGACCAATAACTACGAAATGGTTAATACTTATGATA 788
||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 715 TCGGTTTTTATAAACGAACTTCGACGACGAATAATTACGACATGGTTAATACTTATGATA 774
Query 789 CGACTGCGTTTAAGGGTTGCAAGGAAGAGTTTTGGGAAGCTAAAGGTCTTAAGGTTATGG 848
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 775 CGACGGCGTTTAAGGGTTGCAAGGAAGAGTTTTGGGAAGCAAAAGGTCTTAAGGTTATGG 834
Query 849 TTGGTCAGCTTTCGATTGCTTTCAACATTAGTGCGGTTGAAGTGTAATAATAATCA 904
|||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 835 TTGGTCAGCTTTCGGTTGCTTTCAACGTTAGTGGGGTTGAAGTGTAATAATAATCA 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5