BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62422.1
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475102 jgi|Araly1|475102|fgenesh2_kg.2__232__AT1G62422.1 955 0.0
> Ahg475102 jgi|Araly1|475102|fgenesh2_kg.2__232__AT1G62422.1
Length=800
Score = 955 bits (517), Expect = 0.0
Identities = 620/668 (93%), Gaps = 14/668 (2%)
Strand=Plus/Plus
Query 1 CTCATCAAACTCATTCTTCAAGAAAGACTCACTCTCTTTTCTCTCTCTATGAAAAAGCTT 60
|||||||||||||||| |||||||||||| ||||| |||||||||||||| |||||
Sbjct 1 CTCATCAAACTCATTCCTCAAGAAAGACT--CTCTC---TCTCTCTCTATGAAGAAGCTC 55
Query 61 TGCCGGAAAGGAACCGTTCATCCGTCGCCACCGCCGGCGATAAAGACCGACGAACAGTTT 120
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 56 TGCCGGAAAGGAACCGTTCATCCGTCGCCGGCGCCGGCGATAAAGACCGACGACCAGTTT 115
Query 121 CTATCTCTTCTCCCCGTAGCTATCCTCTCTCTCGTGGCGGCGCTCTCGG-TGGAGGATCG 179
|| ||||| |||||||| |||||||||||||| ||||||||||| |||| | || || ||
Sbjct 116 CTCTCTCTCCTCCCCGTGGCTATCCTCTCTCTTGTGGCGGCGCTTTCGGCT-GAAGACCG 174
Query 180 TGAAGTTCTTGCTTACCTCATCTCAAACTCCGGCGACTCAAATCGTATCTCTCGTCTCAA 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 175 TGAAGTTCTTGCTTACCTCATCTCAAACTCCGGCGACTCAAATCGTTTCTCTCACCTCAA 234
Query 240 GAAAAACAAAGAAGATAATCATCACTCTCCTCTCTTTC-TTTGTGATTGTTTTAGTTGTT 298
||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |
Sbjct 235 GAAAAACAAAGAAGATAATCATCACTCTCCTCT-TTTCGTCTGTGATTGTTTTAGTTGCT 293
Query 299 ACACGAGTTACTGGGTCAGATGGGACACGTCACCGAGGCGCCAACTCATTCACGAGATCA 358
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 294 ACACGAGTTACTGGGTCAGATGGGACTCGTCACCGAGTCGCCAACTCATTCACGAGATCA 353
Query 359 TCGATG-CTTACGAAGATAGTTTGGAGATGAAGAAGAAAAAGAAAGATCGGAGAAAGCGA 417
|||| | ||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 354 TCGACGCCTT-CGAAGATAGTTTGGAGATGAAGAAGAGGAAGAAAGATCGGAGAAAACGA 412
Query 418 TCGGGAAAAGCTTCTGGACGAGTTAACTCGATAGGAACGAGTCGACTCAGTGAATTGGGT 477
|||||||||||||||| ||||||| ||||| | ||| |||||||||||||||| ||||||
Sbjct 413 TCGGGAAAAGCTTCTGTACGAGTTGACTCGGTTGGACCGAGTCGACTCAGTGAGTTGGGT 472
Query 478 TCGAGTTCAG-CCGAGTTTGCTGGTGGTGACTCGGAGAAAGATGGAAATTGCGGCGGTGA 536
|||||||| | ||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 473 TCGAGTTC-GACCGAGTTTGTTGGTGGTGACTCGGGGAAAGATGGAAATTGCGGTGGTGA 531
Query 537 AGAGGCGGAGAAGGAGAAAGGCTCCGTTGGAAAGGTTATGAGTTTCATTGGTCAGAGATT 596
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 532 AGAGGCGGAGAAGGAGAAAGGCTCCGTTGGAAAGGTTTTGAGTTTCATTGGTCAGAGATT 591
Query 597 TTTGGGAGTTTGGGGATAAGGAAATTTCCAAACATTTTGGTGGaaaaaatgatgaaattt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTTGGGAGTTTGGGGATAAGGAAATTTCCAAACATTTTGGTGGAAAAAATGATGAAATTT 651
Query 657 actaaaaa 664
|| |||||
Sbjct 652 AC-AAAAA 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5