BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62430.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475100 jgi|Araly1|475100|fgenesh2_kg.2__230__AT1G62430.1 2558 0.0
> Ahg475100 jgi|Araly1|475100|fgenesh2_kg.2__230__AT1G62430.1
Length=1811
Score = 2558 bits (1385), Expect = 0.0
Identities = 1656/1778 (93%), Gaps = 54/1778 (3%)
Strand=Plus/Plus
Query 92 GCTTTGCCTTTTATCTCCACAATAATAATATTCGTTAACCTCTCCTCGTTCTCGTCGCTG 151
|||||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 72 GCTTTG-CTTTTCTCTCCAC---AATAATATTCGTTTTCCTCTCCTCGTTCTCGTCGCTG 127
Query 152 TTTCTTCCCGATCTTTGCTATA-GTTCTGGATTCAAAATCTTTCTTCCCCAATAGATGTT 210
|||||| |||||||| |||||| ||||||||||||||||| |||||| || ||| ||
Sbjct 128 TTTCTTTCCGATCTTCGCTATATTTTCTGGATTCAAAATCTCTCTTCCTCATTAG--GTA 185
Query 211 TGTC-TCTTAAT-TT-TTGATTTTTCTGC-AAAATC-AAATTTTTAAGAGCTATGGAGGA 265
|| | | || || || ||||||||| ||| |||||| ||| ||| |||||||||||| ||
Sbjct 186 TG-CATGTT-ATCTTCTTGATTTTT-TGCAAAAATCAAAACTTTAAAGAGCTATGGAAGA 242
Query 266 AGAGAATGTTACTAGTTCACCTTCAACACCGGTACATAGGCTTAGGCATCGAAGACGTTC 325
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 243 GGAGAATGTTACTAGTTCACCTTCAACACCGGTACATAGGCTTAGACATCGAAGACGTTC 302
Query 326 TAATGAGGTTGTTACGGATGGGGATAAAGTGAATGCAAGTCCTTTGTTGGTTAATGATCG 385
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 303 TAATGAGGTTGTTATGGATGGGGATAGAGTGAATGCAAGTCCTTTGTTGGTTAATGATCG 362
Query 386 GAATAAGTACAAATCTTTCATGGTCCGGACCTACTCTACGTTATGGATGATTGGTGGTTT 445
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 363 AAATAAGTACAAATCTTTCATGGTCCGGACTTACTCGACTTTATGGATGATTGGTGGTTT 422
Query 446 TGTTTTGGTTGTCTACATGGGTCATCTTTATATCACAGCTATGGTTGTTGTTATTCAAAT 505
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 423 TGTTTTGGTTGTCTACATGGGACATCTCTATATCACAGCTATGGTTGTTGTTATTCAAAT 482
Query 506 ATTTATGGCTAAAGAGTTGTTTAATCTGCTGAGGAAAGCTCCTGAGGATAAATGTCTCCC 565
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 483 TTTTATGGCTAAAGAGTTGTTTAATCTGCTGAGGAAAGCACCTGAGGATAAATGTCTCCC 542
Query 566 CTATATTAAACAGCTCAATTGGCACTTCTTTTTCACTGCCATGCTTTTCGTTTATGGACG 625
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 543 CTGGATTAAACAGCTTAATTGGCACTTCTTTTTCACTGCCATGCTTTTCGTATATGGCCG 602
Query 626 GATCCTTAGTCAACGGTTAGCCAATACCATGACTGCAGATCAGTTCTTCTATCGGCTAGT 685
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 603 GATCCTTAGTCAACGGTTAGCTAATACCATGACTGCAGATCAGTTCTTTTATCGGCTAGT 662
Query 686 CAGCGG-CTTAATCAAATACCATATGGCAATCTGTTACTTGTTGTATATTATAGGTTTCA 744
|| ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 663 CACCGGCCTT-ATCAAATACCATATGGCTATCTGTTACTTGTTGTATATTATAGGTTTCA 721
Query 745 TGTGGTTCATTCTCACATTAAAGAAGAAGATGTACAAGTACCAGTTTGGCCAGTATGCTT 804
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 722 TGTGGTTCATTCTCACATTAAAAAAGAAGATGTACAAGTACCAGTTTGGCCAGTATGCAT 781
Query 805 GGACCCACATGATCTTGATAGTCGTGTTTACTCAATCGTCGTTCACTGTTGCCAACATAT 864
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GGACCCACATGATTTTAATAGTCGTGTTTACTCAATCGTCGTTCACTGTTGCCAACATAT 841
Query 865 TTGAAGGGATCTTCTGGTTTCTTCTCCCAGCATCTTTAATTATAATCAACGACATCTTCG 924
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 842 TTGAAGGGATCTTCTGGTTTCTTCTTCCAGCATCGTTAATTATAATCAACGACATCTTCG 901
Query 925 CCTACATTTTCGGTTTCTTCTTTGGAAGAACGCCTTTAATAAAGCTGTCTCCAAAGAAA- 983
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 902 CTTACATTTTCGGTTTCTTCTTTGGAAGAACGCCCTTAATAAAGCTGTCTCCAAA-AAAG 960
Query 984 ACATGGGAGGGATTCATCGGAGCCTCTGTGACAACTATCATCTCTGCATTTGTTCTGGCA 1043
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 961 ACGTGGGAGGGATTCATCGGAGCTTCTGTGACAACTATCATCTCTGCATTTGTTCTCGCA 1020
Query 1044 AATATTTTGGGTCGTTTCCCTTGGTTGACATGCCCACGACAGGATTTGTCCACTGGCTGG 1103
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 AATATTTTGGGTCGTTACCCTTGGTTGACATGCCCACGACAGGATTTGTCCACTGGGTGG 1080
Query 1104 CTACAGTGTGACGCTGATCCATTGTTCAAACCTGAACCTTTTGCTTTACCTGCATGGATT 1163
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTACAGTGTGACGCTGATCCATTGTTCAAACCTGAACCTTTTGCTTTACCTGCATGGATC 1140
Query 1164 CCAGAATGGTTTCCTTGGAAGGAAATGACGATCCTCCCTGTTCAGTGGCATGCTTTATGC 1223
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1141 CCAGAATGGTTTCCTTGGAAGGAAATGACGGTCCTCCCTGTTCAGTGGCATGCATTATGC 1200
Query 1224 CTCGGTTTGTTCGCTTCAATCATAGCACCTTTTGGAGGATTTTTCGCTAGC-GGTTTCAA 1282
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1201 CTCGGTTTGTTCGCTTCAATCATAGCACCTTTTGGAGGATTTTTCGCTAGCGGGTTT-AA 1259
Query 1283 AAGAGCATTCAAAATTAAGGACTTTGGTGATAGTATTCCAGGACATGGTGGAATCACAGA 1342
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAGAGCATTCAAAATCAAGGACTTTGGTGATAGTATTCCAGGACATGGTGGAATCACAGA 1319
Query 1343 TAGAATGGACTGCCAGATGGTTATGGCAGTATTTGCCTACATATATCTTCAATCATTTAT 1402
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 1320 TAGAATGGACTGCCAGATGGTTATGGCAGTATTTGCTTACATATATCTCCAGTCATTTAT 1379
Query 1403 TGTCTCCCAAAGCGTTTCGGTTGACAAAATCCTAGACCAGATATTGACGAACCTTACCTT 1462
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1380 AGTCTCCCAAAGCGTTTCGGTTGACAAAATCCTAGACCAGGTATTGACGAACCTTACCTT 1439
Query 1463 TGAGGAACAACAAGCGCTCTTCGTGAAGTTAGGACAAATGCTGAAGGACAAGCTCTCATA 1522
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1440 CGAGGAACAACAAGCGCTCTTCGTGAAATTAGGACAAATGCTGAAGGACAAGCTCTCATA 1499
Query 1523 GGCTCCATTGCCAAAAGTTTCTTTTATTCAGATTCTGATTCTCC-AAGAACAGGTTCCTC 1581
| | | | ||| | ||||||||||||||||||| ||||||||||| |||
Sbjct 1500 G--T---T--C------TTT-T---ATTCAGATTCTGATTCTCCCAAGAACAGGTTTCTC 1542
Query 1582 TGGAATATCCTTTTATCTTTGTCCTT-ACTAGAGACAATAAATTTAAAATTGGATTAAGA 1640
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 1543 TGGAATATCCTTTTATCTTTGTCCTTTACTAGAGACAATAAATTTAAAATTGGAT-ACGA 1601
Query 1641 TTTGTTGTTTCCTGCCATTGTAAATCCTCTCGAAATTTGTCGaaaaaaaTAGAAGttttt 1700
|||||| || | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1602 TTTGTT-TT-C-TGCCATTGTAAATCCTCTCGAAATTTGTCGAAAAT--TAGAAGTTTTT 1656
Query 1701 ttttttAAGTCTTCTCATTGGATACAAAAGGTTTGAAGGAAGTTGTATCTAC-TACTATC 1759
|||| ||||||||||||| ||||||| |||||||||||||||||||||||| |||||||
Sbjct 1657 TTTTC-AAGTCTTCTCATTTGATACAATAGGTTTGAAGGAAGTTGTATCTACCTACTATC 1715
Query 1760 T--ACTTATTTAGTAGCTTTGGTGGTTTTTAGCTGTATTTTGTATATTGGTTAAAA-T-G 1815
| ||||||||||||||||||||||||| || ||||||||||||||||||||||| | |
Sbjct 1716 TCTACTTATTTAGTAGCTTTGGTGGTTT--AGTTGTATTTTGTATATTGGTTAAAAATTG 1773
Query 1816 AAACAACATTTGGTTTGTTTGTCTCATGATTCGATTTG 1853
|||| | |||||||||||||||||||||||||||||||
Sbjct 1774 AAACGATATTTGGTTTGTTTGTCTCATGATTCGATTTG 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5