BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62450.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475098 jgi|Araly1|475098|fgenesh2_kg.2__228__AT1G62450.1 532 9e-151
> Ahg475098 jgi|Araly1|475098|fgenesh2_kg.2__228__AT1G62450.1
Length=636
Score = 532 bits (288), Expect = 9e-151
Identities = 315/327 (96%), Gaps = 5/327 (2%)
Strand=Plus/Plus
Query 351 GAAA-GGCCCTTGGTTTACGA-TAAAGGAAGGTTCTAAATACACACTTGTCTTCAACTTC 408
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 310 GAAATGGCCCTTGGTTTACGATTAAAGGAAGGTTCTAAATACACACTTGTCTTCAACTTC 369
Query 409 CGTGTCACAAACAATATCGTTTCGGGCCTTCGCTATAACAATACCGTGTGGAAAACCGGT 468
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 370 CGTGTCACAAACAATATCGTTTCGGGCCTTCGCTATAACAATACCGTATGGAAAACTGGT 429
Query 469 GTTAAAG---TGGATAGTACAAAAGCAATGCTTGGGACGTTTAGTCCTCAAGCTGAGTCT 525
||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 430 GTTAAAGCAGTGGATAGTACGAAAGCAATGCTTGGGACGTTTAGTCCTCAAGCTGAGCCT 489
Query 526 TACCAACATGTAATGCCTGAAGAAATGACACCGTCTGGTATGTTTGCTAGAGGATCCTAT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TACCAACATGTAATGCCTGAAGAAATGACACCGTCTGGTATGTTTGCTAGAGGATCCTAT 549
Query 586 TCCGCAAGAACTAAGTTCATCGATGACGATAACAAATGCTACTTGGAGATCAACTACACC 645
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TCCGCAAGAACTAAGTTTGTCGATGACGATAACAAATGCTACTTGGAGATCAACTACACC 609
Query 646 TTCGACATCCGCAAGAGTTGGCAATGA 672
|| ||||||||||||||||||||||||
Sbjct 610 TTTGACATCCGCAAGAGTTGGCAATGA 636
Score = 523 bits (283), Expect = 5e-148
Identities = 305/316 (97%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTTGGAAGATGAGATGAAGAAAGGTGAAGCGTCAGGAGAGACATCAGAGAAAATG 60
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGTTTTGGAAGATGAGAAGAAGAAAGGAGAAGCGTCAGGAGAGACATCAGAGAAAATT 60
Query 61 GGGTTAAGCAGAAAGAACAGTGGGAGCTCTTTGTCTCCGACAGAGGATGATGAAGAAGAT 120
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 61 GGGTTAAGCAGAAAGAACAGTGAGAGCTCTTTGTCTCCAACAGAGGATGATGAAGAAGAT 120
Query 121 GAAGACAAGAAGCTCGAACTCGGTCCCATGATCGCTCTCAAAGAACAACTCGAGAGAGAC 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 121 GATGACAAGAAGCTCGAACTCGGTCCCATGATCGCTCTCAAAGAACAACTCGAAAAAGAC 180
Query 181 AAGGATGATGAAAGCCTGAGGAGATGGAAGGAACAGCTTCTTGGCGTCGTGGATTTGGAG 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AAGGATGATGAAAGCCTGAGGAGATGGAAGGAACAGCTTCTTGGCGTTGTGGATTTGGAG 240
Query 241 GATGTCGGAGAAACACCGGATCCAGTAGTAAAGATACTAGATCTCACAATTAGATCACCA 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATGTCGGAGAGACACCGGATCCAGTAGTAAAGATACTAGATCTCACAATTAGATCACCG 300
Query 301 GACAGAGAGGAAATGG 316
||||||||||||||||
Sbjct 301 GACAGAGAGGAAATGG 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5