BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62480.1
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475097 jgi|Araly1|475097|fgenesh2_kg.2__227__AT1G62480.1 931 0.0
Ahg471358 jgi|Araly1|471358|fgenesh2_kg.1__1312__AT1G12080.2 80.5 2e-14
> Ahg475097 jgi|Araly1|475097|fgenesh2_kg.2__227__AT1G62480.1
Length=737
Score = 931 bits (504), Expect = 0.0
Identities = 634/695 (91%), Gaps = 15/695 (2%)
Strand=Plus/Plus
Query 1 TTCACTCACCAAAGCATcacataacactcacacacacactttctcttctcttattttctc 60
||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTCACTCACAAAAGCATCACACAACACTCTCACACACACTTTCTCTTCTCTTATTTTCTC 60
Query 61 agttcttttaactcttttctctACATATATTCAAATGGCCACCATCGAGGTTGAACAAGT 120
|||||||||||||| |||| | || || ||||||||||||||| ||||||||||||||||
Sbjct 61 AGTTCTTTTAACTCCTTTC-C-AC-TA-ATTCAAATGGCCACCGTCGAGGTTGAACAAGT 116
Query 121 GACTCCAGTAGCAGCTGAGAACATCGAGGTGCCACCACCAAAGGCTGTGGAGTCGGAGGA 180
|||||||||||||| |||||||||||||||||||||||||||| | || ||||| |||||
Sbjct 117 GACTCCAGTAGCAGGTGAGAACATCGAGGTGCCACCACCAAAGACGGTAGAGTCAGAGGA 176
Query 181 AGTCACCA-CCGTCTCCGAGTCTCTTCCAGCTCCGGTAACAGAATCTCAAGCGCCTGTCG 239
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GGTCA-CAGCCGTCTCCGAGTCTCTTCCAGCTCCGGTAACAGAATCTCAAGCGCCTGTCG 235
Query 240 AAGTAACAACTAAAGATTTGGTCGTGGAAGAGACAGAGAAACCAATCGAAGAAACAGAGG 299
||||||||||||| || |||||| ||| ||| ||||||||||||||| ||||||||||||
Sbjct 236 AAGTAACAACTAATGACTTGGTCTTGGTAGAAACAGAGAAACCAATCAAAGAAACAGAGG 295
Query 300 AAGCTCAAGTTGAAACTCCGGA-GGTTGTGGAGATCAAGAAAGATGAAGAAGCTCCGGTT 358
|||||| |||||| ||||| || || ||||||||| |||||||||||||||||||| |||
Sbjct 296 AAGCTCTAGTTGACACTCC-GACGGCTGTGGAGATAAAGAAAGATGAAGAAGCTCCAGTT 354
Query 359 GAAACTCCGGTGGTTGTGGAGGATGAGAGCAAAACagaggaagttgtagaggcgaagaaa 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 355 GAAACTCCGGTGGTTGTGGAGGAAGAGAGCAAAACAGAGGAAGTTGTAGAGGCCAAGAAA 414
Query 419 gaggaagaagtagaagaaaagaagacagaggaagctccagtggttgtggaggaagagaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAGGAAGAAGTAGAAGAAAAGAAGACAGAGGAAGCTCCAGTGGTTGTGGAGGAAGAGAAG 474
Query 479 aagccagaGGCAGAGGAGGAGAAACCCGCCGTGGAAGCC-TC-CGTGACAGCTCCAGTGG 536
|||||||| || |||||||||||||| | | | |||| || | | ||||| | ||||
Sbjct 475 AAGCCAGAAGCTGAGGAGGAGAAACCTACTGAAGTAGCCGTCGCC-G-CAGCTGCGGTGG 532
Query 537 AGAAGGCTGATGAGTAAATGTGAAGaaaaaaaCTGTCTTTTGAAAGACAAAAGAAGAAGA 596
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
Sbjct 533 AGAAGGCTGATGAGTAAATTTGAAGGAAAAAACTGTCTTTTGAAAGACAGAAGAAGAAAA 592
Query 597 AAATGTTAGCAAGTAATTTATTTGCTACTTT-AAGTACTTTGTGTCTTGTTATGTTTTTG 655
||| |||||||||||| |||||| |||||| ||||||||||||||||||| |||| |||
Sbjct 593 AAACGTTAGCAAGTAAACTATTTGTTACTTTTAAGTACTTTGTGTCTTGTTTTGTTGTTG 652
Query 656 AGTCTATGACTCTTCTTGCTTTTGGTTTTTT-AAT 689
|||||||||||||||||||||||| | |||| |||
Sbjct 653 AGTCTATGACTCTTCTTGCTTTTG-TATTTTCAAT 686
> Ahg471358 jgi|Araly1|471358|fgenesh2_kg.1__1312__AT1G12080.2
Length=703
Score = 80.5 bits (43), Expect = 2e-14
Identities = 72/85 (85%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 90 TTC-AAATGGCCACCATCGAGGTTGAACAAGTGACTCCAGTAGCAGCT-GAGAACATCGA 147
||| ||||||||||| | |||||||||||||||||||||||||||| | |||||| | ||
Sbjct 123 TTCGAAATGGCCACCGTTGAGGTTGAACAAGTGACTCCAGTAGCAG-TAGAGAACGTTGA 181
Query 148 GGTGCCACCACCAAAGGCTGTGGAG 172
||| ||| || |||| | ||||||
Sbjct 182 GGTACCA--AC-AAAGACAGTGGAG 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28172835663
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5