BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62490.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924746 jgi|Araly1|924746|scaffold_200307.1 638 0.0
Ahg924802 jgi|Araly1|924802|scaffold_200363.1 510 6e-144
Ahg924811 jgi|Araly1|924811|scaffold_200372.1 398 5e-110
Ahg315190 jgi|Araly1|315190|fgenesh1_pm.C_scaffold_2000223 396 2e-109
Ahg475137 jgi|Araly1|475137|fgenesh2_kg.2__267__AT1G61980.1 390 9e-108
Ahg924783 jgi|Araly1|924783|scaffold_200344.1 357 9e-98
Ahg315177 jgi|Araly1|315177|fgenesh1_pm.C_scaffold_2000210 346 2e-94
Ahg924813 jgi|Araly1|924813|scaffold_200374.1 335 4e-91
Ahg475136 jgi|Araly1|475136|fgenesh2_kg.2__266__AT1G61990.1 244 7e-64
Ahg924793 jgi|Araly1|924793|scaffold_200354.1 228 7e-59
Ahg924804 jgi|Araly1|924804|scaffold_200365.1 161 7e-39
> Ahg924746 jgi|Araly1|924746|scaffold_200307.1
Length=1462
Score = 638 bits (345), Expect = 0.0
Identities = 497/568 (88%), Gaps = 19/568 (3%)
Strand=Plus/Plus
Query 451 AAACTCTTGGGAAAAAGAGGGCACAAAACTCTCAGCTTATACTATGATTTCGTTAAAGAG 510
||| |||||||||| |||||| |||||||||||||||||| ||||||||| || ||||||
Sbjct 463 AAA-TCTTGGGAAAGAGAGGGGACAAAACTCTCAGCTTATGCTATGATTTTGTCAAAGAG 521
Query 511 AGTTTAGAAGCAGATAAGAGTTCTAAGTAT-GAAACTTTATGTCAGTCTTTTCCACAGGG 569
||||||| ||| ||||||||||| |||| | |||| || ||||| ||||| ||||||||
Sbjct 522 AGTTTAGTAGCGGATAAGAGTTCCAAGT-TGGAAAAGTTGTGTCATTCTTTGCCACAGGG 580
Query 570 TAATCTGGAGAACAAGAA-GAGAAATGTATCGGTTTTAAGAGAATTGGGAATGCCTCACA 628
||| | |||| | || || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 581 TAAGCAGGAGGATAA-AATCAGAAATGTATCGGTTTTGAGAGAATTGGGCATGCCTCACA 639
Query 629 AGTTGTTATTCCCCTTGCTTATATCCGTTGGTCAACCTGTATGTGGAAAAGATAGATTTA 688
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 640 AGTTGTTATTCTCCTTGCTTACATCCGTTGGTCAACCTGTATGTGGAAAAGATAGATTTG 699
Query 689 ATACGTCTCTCAAGAAGGTAGTTGAGATGGGTTTTGATCCGACCACCGCAAAGTTTGTCA 748
|| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 ATGCATCCCTCAAGAAGATAGTTGAGATGGGTTTTGATCCGACCACCGCAAAGTTTGTCA 759
Query 749 AAGCTCTCCACGTATCTT-ACGAAAT-GAACGACAAAACAATAGAAGAAAAAGTCAATGT 806
||||||| |||| | || || || | || |||||||||||||||||||||||| || |
Sbjct 760 AAGCTCTATACGT-TGTTTAC-AATTTGAGTGACAAAACAATAGAAGAAAAAGTCCATAT 817
Query 807 CTACAAAATGTTAGGCTTTGCTGTGGAAGATGTATGGGTAATCTTCAAGAAGTGGCCATA 866
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 818 TTACAAAAGGTTAGGCTTTGCTGTGGAAGATGTATGGGTAATCTTCAAGAAGTGGCCTTT 877
Query 867 CTCTTTGAAATACTCAGAGGAAAAGATTACTCAGACGATTGAAACCTTGAAGATGTGCGG 926
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 878 CTCTTTGAAATTCTCAGAGGAAAAGATAACTCAGACGATTGAAACCTTGAAGATGTGTGG 937
Query 927 TCT-A-CGA----G-G-TCCTTCAAGTTTTGAAGAAGTATCCTCAATTCATACGTACT-T 977
| | | ||| | | |||||||||| |||||||||||||| || || ||||||| | |
Sbjct 938 TTTGAACGAAAACGAGGTCCTTCAAGTATTGAAGAAGTATCCGCAGTTTATACGTA-TGT 996
Query 978 GAGAGCAGAGGATATTGAGCTTAATTGA 1005
| |||||| |||||||| ||| |||||
Sbjct 997 CACAGCAGAAGATATTGAACTTCATTGA 1024
Score = 429 bits (232), Expect = 2e-119
Identities = 309/344 (90%), Gaps = 14/344 (4%)
Strand=Plus/Plus
Query 101 GAGATTTGACTGGTTATGTGATGTGTTCTCTGATACTCCATGGAAGAAGATCTATC-GAG 159
||||||||||||||| || |||| ||||||||||||||||||||||||||||| | |||
Sbjct 1 GAGATTTGACTGGTTCTGACATGTATTCTCTGATACTCCATGGAAGAAGATCTA-CTGAG 59
Query 160 TTACATAAATGGCGTAACTTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCT 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTACATAAATGGCGTAACTTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCT 119
Query 220 TTTTCCAATTCCTTCTCCACTGTTGCTAGTGCTGCTGCTGATGTGAGCCTTATAGATAGT 279
|||||||||||||||||| | || | |||||| |||||||||||| |||| ||
Sbjct 120 TTTTCCAATTCCTTCTCC--T----CT-G--CTGCTG---ATGTGAGCCTTAGAGATGGT 167
Query 280 CAAAAAGGTAAGAACTTTACAGTCTCTTACCTCGTTGATTCATTGGGTTTACCTAAAAAG 339
| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||
Sbjct 168 CGAAAAGGTAAGAACTTTACAATCTCTTACCTTGTTGATTCATTGGGTTTACCTATAAAG 227
Query 340 CTCGCTGAATCGATTTCAAAGAAATTTAGATTCGAGGACAAGGCCAATCCTGATTCTGTT 399
||||| | ||||||||||| |||| | || || ||| ||||||||||||| |||||||||
Sbjct 228 CTCGCAGGATCGATTTCAAGGAAAGTCAGGTTTGAGAACAAGGCCAATCCCGATTCTGTT 287
Query 400 CTGAGTCTTTTGAGAAGTCATGGGTTCACAGTTTCTCAGATCTC 443
||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 288 CTGAGTCTTCTGAGAAGTCATGGGTTCACAGATTCTCAGATCTC 331
> Ahg924802 jgi|Araly1|924802|scaffold_200363.1
Length=1196
Score = 510 bits (276), Expect = 6e-144
Identities = 489/588 (83%), Gaps = 29/588 (5%)
Strand=Plus/Plus
Query 440 TCTCAA-TTCCTAAACTCTT-GGGAA-AAAGAGGGCACAAAACTCTCAGCTTATACTATG 496
||| || |||||||| |||| ||||| | |||||| |||| || | ||| ||||||||
Sbjct 146 TCTAAAGTTCCTAAAATCTTGGGGAAGAGAGAGGG--CAAATCTATTAGCAGATACTATG 203
Query 497 ATTTCGTTAAAGAGAGTT-TAGAAGCAGATAAGAGTT-CT--AAGTATGAAACTTTATGT 552
||||| | |||| | || |||||||||||||||||| || |||||||||| ||||||
Sbjct 204 ATTTCATCAAAGTCA-TTATAGAAGCAGATAAGAGTTCCTCCAAGTATGAAAAGTTATGT 262
Query 553 CAGT-CTTTTCCACAGGGTA--A-TCTGGAGAACAAGAA-GAGAAATGTATCGGTTTTAA 607
|| | |||| ||| |||||| | | ||| || || || |||||||| | |||| | |
Sbjct 263 CA-TGCTTTGCCAGAGGGTAGTAGGCAGGATAATAA-AATCAGAAATGTTTTGGTTCTGA 320
Query 608 GAGAATTGGGAATGCCTCACAAGTTGTTATTCCCCTTGCTTATATCCGTTGGTC-AACCT 666
|||||||||| ||||||| | |||||||||| ||||||| || || | | | | ||||
Sbjct 321 GAGAATTGGGTGTGCCTCAGAGGTTGTTATTCTCCTTGCTCATCTCTGATAG-CGGACCT 379
Query 667 GTATGTGGAAAAGATAGATTT-AATACGTCTCTCAAGAAGGTAGTTGAGATGGGTTTTGA 725
|||||||||||||| | |||| || | || ||||||||||| |||||||||||||||||
Sbjct 380 GTATGTGGAAAAGAAAAATTTGAAGA-ATCCCTCAAGAAGGTTGTTGAGATGGGTTTTGA 438
Query 726 TCCGACCACCGCAAAGTTTGTCAAAGCTCTCCACGTATCTTACGAAATGAACGACAAAAC 785
||| ||||| | |||||||||||||||||||| | | |||| |||||| ||||||||
Sbjct 439 TCCAACCACTTCGAAGTTTGTCAAAGCTCTCCATGGCTTTTACCAAATGAGTGACAAAAC 498
Query 786 AATAGAAGAAAAAGTCAATGTCTACAAAATGTTAGGCTTTGCTGTGGAAGATGTATGGGT 845
||| ||||||||| || |||||||||||| |||||||||| |||||||||||||||||||
Sbjct 499 AATTGAAGAAAAACTCGATGTCTACAAAAGGTTAGGCTTTTCTGTGGAAGATGTATGGGT 558
Query 846 AATCTTCAAGAAGTGGCCATACTCTTTGAAATACTCAGAGGAAAAGATTACTCAGACGAT 905
|||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||
Sbjct 559 AATCTTCAAGAAGTGGCCTTGCTCTTTGAAATTCTCAGAGGAAAAGATAACTCAGACGAT 618
Query 906 TGAAACCTTGAAGATGTGCGGTCT--ACGA----G--GTCCTTCAAGTTTTGAAGAAGTA 957
|||||||||||||||||| ||||| |||| | ||||||||||| ||||||||||
Sbjct 619 TGAAACCTTGAAGATGTGTGGTCTGGACGAAAACGAAGTCCTTCAAGTGCTGAAGAAGTA 678
Query 958 TCCTCAATTCATACGTACTTGAGAGCAGAGGATATTGAGCTTAATTGA 1005
||| ||||||||||||| || |||||||| ||||||||| ||||||||
Sbjct 679 TCCGCAATTCATACGTATTTCAGAGCAGAAGATATTGAGTTTAATTGA 726
> Ahg924811 jgi|Araly1|924811|scaffold_200372.1
Length=2348
Score = 398 bits (215), Expect = 5e-110
Identities = 357/423 (84%), Gaps = 19/423 (4%)
Strand=Plus/Plus
Query 460 GGAAA-AAGAGGGCACAAAACTCTCAGCTTATACTATGATTTCGTTAAAGAGAGTTTAGA 518
||||| || |||| |||||||| ||||| |||||||||||||| | ||||| | |||
Sbjct 1603 GGAAAGAA-AGGGGACAAAACTATCAGCGTATACTATGATTTCATCAAAGACACTTT--- 1658
Query 519 AGCA-GATAAGAGTTCTAAGTATGAAACTTTATGTCAGTCTTTTCCACAGGGTAATCTGG 577
| || ||||||||||| ||||| |||| || ||||| |||||||||| ||||||||| |
Sbjct 1659 A-CATGATAAGAGTTCCAAGTACGAAAAGTTGTGTCATTCTTTTCCACCGGGTAATCTAG 1717
Query 578 AGAACAAGAAGAGAAATGTATCGGTTTTAAGAGAATTGGGAATGCCTCACAAGTTGTTAT 637
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 AGAACAAGATCAGAAATGTATCGGTTTTAAGAGAATTGGGAATGCCTCACAAGTTGTTAT 1777
Query 638 TCCCCTTGCTTATATCCGTTGGTCAACCTGTATGTGGAAAAGATAGATTTAATACGT-CT 696
|| ||||||| || |||| | | |||||||||||||||||||| | |||| | | | |
Sbjct 1778 TCTCCTTGCTCATCTCCGATAGCCAACCTGTATGTGGAAAAGAAAAATTTGA-AGGAACC 1836
Query 697 CTCAAGAAGGTAGTTGAGATGGGTTTTGATCCGACCACCGCAAAGTTTGTCAAAGCTCTC 756
||||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct 1837 CTCAAGAAGGTTGTTGAGATGGGTTTTGATCCAACCACCGGAAAGTTTGTCGAAGCTCTA 1896
Query 757 CACGT-ATCTTACGAAATGAACGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAAT 815
|||| || |||| |||||||||| |||||||| ||||||| | ||||| |||| ||||
Sbjct 1897 AACGTTAT-TTACAAAATGAACGAGAAAACAATCGAAGAAAGATTCAATCTCTATAAAA- 1954
Query 816 G-TTAGGCTTTGCTGTGGAAGATGTATGGGT-AA-TCTTCAAGAAGTGGCCA-TACTCTT 871
| |||||||||| || || |||||||||| | || | ||||| ||||||||| | ||||
Sbjct 1955 GCTTAGGCTTTGATGCGGGAGATGTATGG-TCAAGT-TTCAAAAAGTGGCCAAT-CTCTC 2011
Query 872 TGA 874
|||
Sbjct 2012 TGA 2014
Score = 73.1 bits (39), Expect = 4e-12
Identities = 63/74 (85%), Gaps = 4/74 (5%)
Strand=Plus/Plus
Query 121 ATGTGTTCTCTGATACTCCATGGAAGAAGATCTA-TCGAGTTACATAAATGGCGTAACTT 179
||||||||||||||||||||||||||||| | | || ||||||| |||||| || | ||
Sbjct 22 ATGTGTTCTCTGATACTCCATGGAAGAAGGT-TGGTCCAGTTACAGAAATGGTGTCA-TT 79
Query 180 T-AGTGTTTCAGTG 192
| ||| ||||||||
Sbjct 80 TGAGTTTTTCAGTG 93
> Ahg315190 jgi|Araly1|315190|fgenesh1_pm.C_scaffold_2000223
Length=1338
Score = 396 bits (214), Expect = 2e-109
Identities = 413/505 (82%), Gaps = 29/505 (6%)
Strand=Plus/Plus
Query 440 TCT-CAATTCCTAA-ACTCTTGGGAAAAAGAGGGCACAAAACTCTCAGCT-TATACTATG 496
||| || ||||||| | |||||||||| |||||||||||| || | | || |||||||||
Sbjct 394 TCTACAGTTCCTAAGA-TCTTGGGAAAGAGAGGGCACAAATCTAT-ATCTGTATACTATG 451
Query 497 ATTTCGTTAAAGAGAGT-TTAGAAGCAGATAAGAGTTCTAAG-TATGAAACTTTATGTCA 554
||||||| ||||| | | ||||||| |||||||||||| || || |||| |||| ||
Sbjct 452 ATTTCGTCAAAGACA-TCATAGAAGCTGATAAGAGTTCT-AGTTACGAAAAACTATGCCA 509
Query 555 GTCTTTTCCACAGGGTAATC-TGGAGAACAAGAAGAGAAATGTATCGGTTTTAAGAGAAT 613
||||||||||||||||| | ||| ||||||| |||||| | || ||||| |||||||
Sbjct 510 TTCTTTTCCACAGGGTAA-CAAGGAAAACAAGATCAGAAATATCTCTGTTTTGAGAGAAT 568
Query 614 TGGGAATGCCTCACAAG-TTGTTATTCCCCTTGCTTATATCCGTTGGTCAACCTGTATGT 672
|||| || |||| | ||||||||||||||||| || || | | | |||||||| |||
Sbjct 569 TGGGTGTGGCTCA-GCGTTTGTTATTCCCCTTGCTCATCTCTGATAGCCAACCTGTTTGT 627
Query 673 GGAAAAGATAGATTT-AATACGTCTCTCAAGAAGGTAGTTGAGATGGGTTTTGATCC-GA 730
|| ||||| |||||| || | || ||||||||||| |||||||||||||||||||| ||
Sbjct 628 GGGAAAGAAAGATTTGAAGA-ATCACTCAAGAAGGTTGTTGAGATGGGTTTTGATCCGGA 686
Query 731 CCACCGCAAAGTTTGTCAAAGCTCTCCACG-TATCTTACGA-AATGAACGACAAAACAAT 788
||| |||||||||| ||||||| | || ||| |||| | ||||| ||||||||||||
Sbjct 687 -GACCTCAAAGTTTGTTGAAGCTCTGCGCGTTAT-TTAC-AGAATGAGCGACAAAACAAT 743
Query 789 AGAAGAAAAAGTCAATGTCTACAAAATGTTAGGCTTTGCTGTGGAAGATGTATGGGTAAT 848
|||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||| |||
Sbjct 744 AGAAGAAAAAGTCAATGTTTACAAAAGGTTAGGCTTTGGTGTGGCTGATGTATGGGGAAT 803
Query 849 CTTCAAGAAGTGGCCATACTCTTT-GAAATACTCAGAGGAA-AAGATTACTCAGACGATT 906
||||| ||||||||| | || ||| | |||||||||| || ||||| ||||| ||| ||
Sbjct 804 CTTCATGAAGTGGCCTT-CTTTTTTGTCATACTCAGAG-AAGAAGATAACTCATACGTTT 861
Query 907 GAAACC-TTGAAGATGT-GCGGTCT 929
|||||| || | || || |||||||
Sbjct 862 GAAACCCTT-ATGA-GTTGCGGTCT 884
Score = 180 bits (97), Expect = 2e-44
Identities = 192/236 (81%), Gaps = 14/236 (6%)
Strand=Plus/Plus
Query 214 TCTGCTTTTTCCAATTCCTTCTCCACTGTTGCTAGTGCTGCTGCTGATGTGAGCCTTATA 273
||| |||| || ||||| |||| || || |||||| | |||||||| |||||||| |
Sbjct 82 TCTTCTTTGTCAAATTCGTTCT---CTTTTACTAGTG-T--TGCTGATGCGAGCCTTAGA 135
Query 274 GATAGTCAAAAAGGTAAGAACTTTA-CAGTCTCTTACCTCGTTGATTCATTGGGTTTA-C 331
||| ||| ||||| || ||||||| || ||||||||||||||||||||||||||||| |
Sbjct 136 GATGGTCTTAAAGGGAACAACTTTACCA-TCTCTTACCTCGTTGATTCATTGGGTTTAAC 194
Query 332 CTA-AAAAGCTCGCTGAATCGATTTCAAAGAAATTTAGATTCGAGGACAAGGCCAATCCT 390
| | |||| ||||| |||||||| ||||||||| | || |||||||||||| |||||
Sbjct 195 C-ACAAAA-CTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGAGGACAAGGAAAATCCG 252
Query 391 GATTCTGTTCTGAGTCTT-TTGAGAAGTCATGGGTTCACAGTTTCTCAGATCTCAA 445
||||||||| |||||||| || | |||| |||| |||||| |||||||| ||||
Sbjct 253 GATTCTGTTGTGAGTCTTCTT-ACAAGTTATGGCTTCACAAAGTCTCAGATTTCAA 307
> Ahg475137 jgi|Araly1|475137|fgenesh2_kg.2__267__AT1G61980.1
Length=1322
Score = 390 bits (211), Expect = 9e-108
Identities = 397/483 (82%), Gaps = 27/483 (6%)
Strand=Plus/Plus
Query 443 CAA-TTCCTAAACTCTTGGGAAAAAGAGGGCACAAAACTCTCAGCTTATACTATGATTTC 501
||| |||| ||| |||||||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 431 CAAGTTCCGAAAATCTTGGGAAAGAGAGGGCACAAAACTATCAGCGTATACTATGATTTC 490
Query 502 GTTAAAGAGAGTTTAGAAGCA-GATAAGAGTTCTAAGTATGAAACTTTATGTCAGTCTTT 560
| ||||| | |||| | || ||||||||||| ||| | |||| | |||||| |||||
Sbjct 491 ATCAAAGACACTTTATTA-CATGATAAGAGTTCCAAGAAGGAAAAGTCATGTCATTCTTT 549
Query 561 TCCACAGGGTAATCTGGAGAACAAGAAGAGAAATGTATCGGTTTTAAGAGAATTGGGAAT 620
|||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 550 TCCACAGGGTAATCTGGAGAACAAGATCAGAAATATATCGGTTTTGAGAGAATTGGGAAT 609
Query 621 GCCTCACAAGTTGTTATTCCCCTTGCTTATATCCGTTG-GTCA-ACCTGTATGT-GGAAA 677
||||||||||||||||||||||||||| || || ||| | | |||||| | | || ||
Sbjct 610 GCCTCACAAGTTGTTATTCCCCTTGCTCATCTC--TTGTGACGTACCTGTCT-TCGGTAA 666
Query 678 AGATAGATTT-AATACGTCTCTCAAGAAGGTAGTTGAGATGGGTTTTGATCCGACCACCG 736
||| | |||| || | || |||||||| || ||||| |||||||||||||||||| | |
Sbjct 667 AGAAAAATTTGAAGAA-TCCCTCAAGAAAGTTGTTGACATGGGTTTTGATCCGACCTCTG 725
Query 737 CAAAGTTTGTCAAAGCTCTCC-ACGTATCTTACGAA-AT-GAACGACAAAACAATAGAAG 793
|||||||| || ||||||| | | || | || | || || || |||||||||||||||||
Sbjct 726 CAAAGTTTCTCGAAGCTCTACGA-GT-TGTT-CAAAGATTGAGCGACAAAACAATAGAAG 782
Query 794 AAAAAGTCAATGTC-TACAAAATGTTAGGCTTTGCTGTGG-AAGATGTATGGGTAATCTT 851
|||||||||||| | || ||| ||||||||||| ||||| || ||||||||| | | ||
Sbjct 783 AAAAAGTCAATG-CGTATGAAAGGTTAGGCTTTGATGTGGGAA-ATGTATGGGCAGTGTT 840
Query 852 CAAGAAGTGGCCATACTCTT-TGAAATACTCAGAGGAA-AAGATTACTCAG-ACGATTGA 908
||||| ||||||| ||| || ||| | | |||||| || ||||| | | || || |||||
Sbjct 841 CAAGAGGTGGCCAAACT-TTCTGACACATTCAGAG-AAGAAGAT-ATTGAGCACCATTGA 897
Query 909 AAC 911
|||
Sbjct 898 AAC 900
Score = 259 bits (140), Expect = 3e-68
Identities = 272/332 (82%), Gaps = 24/332 (7%)
Strand=Plus/Plus
Query 117 TGTGATGTGTTCTCTGATACTCCATGGAAGAAGATCT-ATCGAGTTACATAAATGGCGTA 175
||| |||| ||||||||| | |||||||||||| | | ||||||| || |||||||||
Sbjct 1 TGTCATGTATTCTCTGATTCGCCATGGAAGAAGGT-TGGTCGAGTTGCAGAAATGGCGTC 59
Query 176 ACTTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCTTTTTCCAATTCCTTCT 235
| ||| | |||| | || ||||||| | | |||| |||| |||||||| ||||
Sbjct 60 A-TTT-GAGTTT---TTTAG----TGCAAAAGGCA-TCTC--CTTTATCCAATTCATTCT 107
Query 236 CCACTGTTGCTAGTGCTGCTGCTGATGTGAGCCTTATAGA--TAGTCAAAAAGGTAAGAA 293
| || ||||| || ||| | | | ||| || |||| | ||| ||||||||| ||
Sbjct 108 -C-CT-CTGCTACTGTTGC-AC-G-TACGAG--TTCTAGAGTTGGTCGAAAAGGTAACAA 159
Query 294 CTTTACAGTCTCTTACCTCGTTGATTCATTGGGTTTACCTAAAAAGCTCGCTGAATCGAT 353
||||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||
Sbjct 160 CTTTACAGTCTCTTACCTCGTTGATTCTTTGGGTTTAGCTAGAAAGCTCGCAGAATCGAT 219
Query 354 TTCAAAGAAATTTAGATTCGAGGACAAGGCCAATCCTGATTCTGTTCTGAGTCTTTTGAG 413
||||| |||| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 220 TTCAAGGAAAGTTAGCTTCGAGGACAAGGCCAATCCTGATTCTGTTCTGAATCTTTTGAG 279
Query 414 AAGTCATGGGTTCACAGTTTCTCAGATCTCAA 445
||||||||||||||| | ||||||||||||||
Sbjct 280 AAGTCATGGGTTCACTGATTCTCAGATCTCAA 311
> Ahg924783 jgi|Araly1|924783|scaffold_200344.1
Length=1435
Score = 357 bits (193), Expect = 9e-98
Identities = 283/324 (87%), Gaps = 15/324 (5%)
Strand=Plus/Plus
Query 126 TTCTCTGA-TACTCCATGGAAGAAGATCT-ATCGAGTTACATAAATGGCGTAACTTTAGT 183
|||||||| | || ||||||| ||| | | || |||| || ||| ||| ||||||||||
Sbjct 32 TTCTCTGATTCCT-CATGGAAAAAGGT-TGGTCCAGTTTCAGAAAGGGCATAACTTTAGT 89
Query 184 GTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCTTTTTCCAATTCCTTCTCCA-CTGT 242
|| |||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 90 GTCTCAGTGAAGCTTTTCCAAAATGTATTCTCTGCTTTTTCCAATTCCTTCT-CATCTGT 148
Query 243 TGCTAGTGCTGCTGC-TGATGTGAGCCTTATAGATAGTCAAAAAGGTAAGAACTTTACAG 301
||||||| | || | |||||||||| ||| |||| ||| ||||||||| ||||||||||
Sbjct 149 TGCTAGT--T-CT-CATGATGTGAGCATTAGAGATGGTCGAAAAGGTAACAACTTTACAG 204
Query 302 TCTCTTACCTCGTTGATTCA-TTGGGTTTACCTAAAAAGCTCGCTGAATCGATTTCAA-A 359
||||||||||| |||||||| || |||||| ||||||||||||| || |||||||||| |
Sbjct 205 TCTCTTACCTCATTGATTCACTT-GGTTTAACTAAAAAGCTCGCAGAGTCGATTTCAATA 263
Query 360 GAAATTTAGATTCGAGGACAAGGCCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCA 419
||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 -AAAGTCAGTTTCGAGAACAAGGCCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCA 322
Query 420 TGGGTTCACAGTTTCTCAGATCTC 443
|||||| |||| ||||||||||||
Sbjct 323 TGGGTTTACAGATTCTCAGATCTC 346
> Ahg315177 jgi|Araly1|315177|fgenesh1_pm.C_scaffold_2000210
Length=2439
Score = 346 bits (187), Expect = 2e-94
Identities = 283/328 (86%), Gaps = 12/328 (4%)
Strand=Plus/Plus
Query 121 ATGTGTTCTCTGATACTCCATGGAAG-AAGATCT-ATCGAGTTACATAAATGGCGTAACT 178
|||| ||||||||| ||||||||||| ||| | | || |||| || ||||||||| |||
Sbjct 1 ATGTATTCTCTGATTCTCCATGGAAGAAAG-T-TGGTCCAGTTTCAGAAATGGCGTCACT 58
Query 179 TTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCTTTTTCCAATTCCTTCTCCA 238
| || ||||| ||||| ||||| ||||||| | ||||||||||||||||||||||||
Sbjct 59 TGAGGGTTTCGGTGAATCTTTTCCAAAATGGA---TCTGCTTTTTCCAATTCCTTCTCCT 115
Query 239 CTGTTGCTAGTGCTGCTGCTGATGTGAG-CCTTATAGATAGTCAAAAAGGTAAGAACTTT 297
| | |||||||||| | |||||||||| || || || | ||| |||||| || ||||||
Sbjct 116 CCGCTGCTAGTGCT--T-CTGATGTGAGTCC-TAGAGTTGGTCGAAAAGGAAACAACTTT 171
Query 298 ACAGTCTCTTACCTCGTTGATTCATTGGGTTTACCTAAAAAGCTCGCTGAATCGATTTCA 357
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 172 ACAGTCTCTTACCTCGTTGATTCATTGGGTTTACCTAACAAGCTCGCAGAATCTATTTCA 231
Query 358 AAGAAATTTAGATTCGAGGACAAGGCCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGT 417
| |||| | || ||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 232 AGGAAAGTCAGCTTCGAGGACAAGGGCAATCCTGTTTCTGTTCTGAATCTTTTGAGAAGT 291
Query 418 CATGGGTTCACAGTTTCTCAGATCTCAA 445
||||||||||||| ||||||||||||||
Sbjct 292 CATGGGTTCACAGATTCTCAGATCTCAA 319
Score = 215 bits (116), Expect = 6e-55
Identities = 237/292 (81%), Gaps = 21/292 (7%)
Strand=Plus/Plus
Query 158 AGTTACATAAATGGCGTAACTTT-AGTGTTTCAGTGAAGCTT-TTGCAAAATG-TATTCT 214
|||| || ||||||||| | ||| || ||||||||||| ||| | | |||| | | |||
Sbjct 1142 AGTTGCAGAAATGGCGTCA-TTTGAGAGTTTCAGTGAACCTTCTCG-AAAA-GCCA-TCT 1197
Query 215 CTGCTTTTTCCAATTCCTTCTCCACTGTTGCTAGTGCTGCTGCTGATGTGAGCCTTATAG 274
| ||||| |||||||||||| | || ||||| ||||| | |||| |||||||| ||
Sbjct 1198 C--CTTTTCCCAATTCCTTCT-C-CT-ATGCTA---CTGCTACAGATGCGAGCCTTAGAG 1249
Query 275 ATAGTC-AAAAAGGTAAGAACTTTACAGTCTCTTACCTCGTTGATTCATTGGGTTTACCT 333
| ||| |||||||| ||| ||| | |||||||||||||||| ||||||||||||| ||
Sbjct 1250 CTGGTCGAAAAAGGT-TGAATTTTTCTGTCTCTTACCTCGTTGCTTCATTGGGTTTAACT 1308
Query 334 AAA-AAGCTCGCTGAATCGATTTCAAAGAAA-TTTAGATTCGAGGACAAGGCCAATCCTG 391
||| ||| |||| |||||||| |||| |||| | | | || | ||||||| ||||||||
Sbjct 1309 AAAGAAG-TCGCAGAATCGATCTCAAGGAAAGTCT-GTTTGGTTGACAAGGGCAATCCTG 1366
Query 392 ATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAGTTTCTCAGATCTC 443
|||||||||||||||||||||||||| ||| |||||| | ||||||||||||
Sbjct 1367 ATTCTGTTCTGAGTCTTTTGAGAAGTTATGCGTTCACTGATTCTCAGATCTC 1418
> Ahg924813 jgi|Araly1|924813|scaffold_200374.1
Length=1331
Score = 335 bits (181), Expect = 4e-91
Identities = 374/463 (81%), Gaps = 30/463 (6%)
Strand=Plus/Plus
Query 440 TCT-CAATTCCTAAACTCTTGGGAAAAAGAGGGCACAAAACTCTCAGCTTATACTATGAT 498
||| || |||||||| |||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 451 TCTACAGTTCCTAAAATCTTGGGAAAGAGAGGGCACAAAACTATCAGCAGATACTATGAT 510
Query 499 TTCGTTAAAGAGAGTT-TAGAAGCAGATAAGAGTTCTAAGTATGA-AACTTTATGTCAGT 556
||||| |||| | || ||||||| || |||||||| ||||| || || |||||||| |
Sbjct 511 TTCGTCAAAGTCA-TTATAGAAGCGGACAAGAGTTCCAAGTACGAGAA-GTTATGTCATT 568
Query 557 CTTTTCCACA-GG--GTAATCTGGAGAACAAGAA-GAGAAATGTATCGGTTTTAAGAGAA 612
|||| ||| | || |||| | ||||||||| || ||||| ||| |||||| ||||||
Sbjct 569 CTTTGCCAGAGGGTAGTAAGCAGGAGAACAA-AATCCGAAATTTATTGGTTTTGAGAGAA 627
Query 613 TTGGGAATGCCTCACAAGTTGTTATTCCCCTTGCTTATATCCGTTGGTCAACCTG--T-A 669
|||| ||||||| | |||||||||| ||||||| || ||| ||||| || |
Sbjct 628 CTGGGGGTGCCTCAGAGGTTGTTATTCTCCTTGCTCATCTCC---AATCAACATGTCTGC 684
Query 670 TGTGGAAAAGATAGATTT-AA-TACGTCTCTCAAG-AAGGTAGTTGAGATGGGTTTTGAT 726
||||||||||| | ||| || || || ||| || ||||| ||||| |||||||||||
Sbjct 685 TGTGGAAAAGAAATTTTTGAAGTA--TCACTC-AGAAAGGTCGTTGATCTGGGTTTTGAT 741
Query 727 CCGACCACCGCAAAGTTTGTCAAAG--CTCTCCACGTATCTTACGAAATGAACGACAAAA 784
|| |||||| ||| ||||||| ||| || | ||| | | ||||| ||||| ||||||||
Sbjct 742 CCCACCACCTCAACGTTTGTCGAAGCCCTGTGCAC-TGT-TTACGGAATGAGCGACAAAA 799
Query 785 CAATAGAAGAAAAAGTCAATGTCTACAAAATGTTAGGCTTTGCTGTGGAAGATGTATGGG 844
||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||
Sbjct 800 CAATAGAAGAAAAAGTCGATGTCTATAAAAGGTTAGGCTTTGCTGTGGAAGATGTATGGG 859
Query 845 TAATCTTCAAGAAGTGGCCA-TACTCT-TTGAAATACTCAGAG 885
||| ||||||||||||||| | |||| ||| || |||| |||
Sbjct 860 CAATGTTCAAGAAGTGGCCACT-CTCTCTTGCAA-ACTCGGAG 900
Score = 226 bits (122), Expect = 3e-58
Identities = 200/236 (85%), Gaps = 12/236 (5%)
Strand=Plus/Plus
Query 214 TCTGCTTTTTCCAATTCC-TTCTCCACTGTTGCTAGTGCTGCTGCTGATGTGAGCCTTAT 272
|||||||||||||| ||| ||||| ||| ||| | | || ||||||||||||||||
Sbjct 103 TCTGCTTTTTCCAA-TCCGTTCTCTTCTGCTGC-A-AG-TGATGCTGATGTGAGCCTTGG 158
Query 273 AGATAGTCAAAAAGGTAAGAACTTT-ACAGTCTCTTACCTCGTTGATTCATTGGGTTTAC 331
|||| ||| |||||| ||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 159 AGATGGTCGAAAAGGGAAG-ACTTTCACAGTCTCTTACCTCGTTGATTCTTTGGGTTTAT 217
Query 332 CTAAAAAGCTCGCTGAATCGATTTCAAAGAAATTTAGATTC-G---AGGACAAGGCCAAT 387
||||||||||||| ||||| ||||| | |||| | || ||| | || ||||| |||
Sbjct 218 CTAAAAAGCTCGCAGAATCTATTTCTAGGAAAGTCAGCTTCTGTTCTGG-CAAGGGTAAT 276
Query 388 CCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAGTTTCTCAGATCTC 443
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 277 CCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAGATACTCAGATCTC 332
> Ahg475136 jgi|Araly1|475136|fgenesh2_kg.2__266__AT1G61990.1
Length=1405
Score = 244 bits (132), Expect = 7e-64
Identities = 271/333 (81%), Gaps = 30/333 (9%)
Strand=Plus/Plus
Query 117 TGTGATGTGTTCTCTGATACTCCATGGAAGAAGATCT-ATCGAGTTACATAAATGGCGTA 175
||| |||| ||||||||| |||||||||||||| | | |||| || |||||||||||
Sbjct 56 TGTCATGTATTCTCTGATTCTCCATGGAAGAAGGT-TGGTCGAATTGCATAAATGGCGCC 114
Query 176 ACTTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCTTTTTCCAATTCCTTCT 235
| ||| | | || | || | ||||||||| | |||| |||| |||||||||||||
Sbjct 115 A-TTT-GAGATT---T---GC-TCTGCAAAATGCA-TCTC--CTTTGTCCAATTCCTTCT 162
Query 236 CCACTGTTGCTAG-TGCTGCTGCTGATGTGA-GCCTTATAGATAGTCAAAAAGGTAAGAA 293
| || || | ||||||||||||||||| | | | |||| ||| |||||| |||||
Sbjct 163 ---C--TT-CT-GCTGCTGCTGCTGATGTGAGGTC-AAGAGATGGTCGAAAAGGAAAGAA 214
Query 294 CTTTACAGTCTCTTACCTCGTTGATTCATTGGGTTTAC-CTAAAAAGCTCGCTGAATCGA 352
|||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 215 CTTTACGGTCTCTTACCTCGTTGATTCATTGGGTTT-CACTACAAAGCTCGCTGAATCGA 273
Query 353 TTTCAAAGAAA-TTTAGATTCGA-GGACAAGGCCAATCCTGATTCTGTTCTGAGTCTTTT 410
| |||| |||| || | ||| | |||||||| ||||| ||||||||||||||||||||
Sbjct 274 TCTCAAGGAAAGTTCA-TTTC-ACCGACAAGGCAAATCCGGATTCTGTTCTGAGTCTTTT 331
Query 411 GAGAAGTCATGGGTTCACAGTTTCTCAGATCTC 443
|||||||||||| |||| || ||||||||||||
Sbjct 332 GAGAAGTCATGGCTTCATAGATTCTCAGATCTC 364
> Ahg924793 jgi|Araly1|924793|scaffold_200354.1
Length=1203
Score = 228 bits (123), Expect = 7e-59
Identities = 171/193 (89%), Gaps = 7/193 (4%)
Strand=Plus/Plus
Query 255 TGCTGATGTGAGCCTTATAGATAGTCAAAAAGGTAAGAAC-TTTACAGTCTCTTACCTCG 313
|||||||||||| |||| |||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 2 TGCTGATGTGAGTCTTAGAGATGGTCAAAAAGGTAAGAACTTTTACTGTCTCTTACCTCG 61
Query 314 TTGATTCA-TTGGGTTTACCTAAAAAGCTCGCTGAATCGATTTCA-AAG-AAATTTAGAT 370
|||||||| || |||||| |||||||| | || ||||||| || | ||| ||| | || |
Sbjct 62 TTGATTCACTT-GGTTTAGCTAAAAAGGTAGCAGAATCGA-TT-ATAAGAAAAGTCAGTT 118
Query 371 TCGAGGACAAGGCCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAG 430
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCGAGAACAAGGGCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAG 178
Query 431 TTTCTCAGATCTC 443
| ||||||||||
Sbjct 179 ATACTCAGATCTC 191
> Ahg924804 jgi|Araly1|924804|scaffold_200365.1
Length=298
Score = 161 bits (87), Expect = 7e-39
Identities = 117/131 (89%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 708 AGTTGAGATGGGTTTTGATCCGACCACCGCAAAGTTTGTCAAAGCTCTCCACGTATCTTA 767
||||||||||||||||||||||||||| |||||||||||||||||||| ||| | |||
Sbjct 107 AGTTGAGATGGGTTTTGATCCGACCACTTCAAAGTTTGTCAAAGCTCTCAACGCCTTTTA 166
Query 768 CGAAATGAACGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAATGTTA----GGCT 823
| |||||| |||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 167 CCAAATGAGCGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAAGGTTAATTAGGCT 226
Query 824 TTGCTGTGGAA 834
|| ||||||||
Sbjct 227 TTACTGTGGAA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5