BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62500.1
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475096 jgi|Araly1|475096|fgenesh2_kg.2__226__AT1G62500.1 1903 0.0
> Ahg475096 jgi|Araly1|475096|fgenesh2_kg.2__226__AT1G62500.1
Length=1322
Score = 1903 bits (1030), Expect = 0.0
Identities = 1220/1307 (93%), Gaps = 32/1307 (2%)
Strand=Plus/Plus
Query 1 GGTTAACACCCATACAAGAGTCACGGGTCACATTTAAGCTTCAACTATATATTTGCATGT 60
|||| |||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 1 GGTTTACACCCATACAAGAGTCACGGGTCACATTTAAGCTTCACCTATATAGTTACATGT 60
Query 61 TATTTGCCAAAAGGATTTGACAATAATGCAAC-AAGAGTTTCA---TTGAAAATTTCAAG 116
|| ||||| |||||||||||||||||||| || |||||||| | ||||||| ||||||
Sbjct 61 TACTTGCCCAAAGGATTTGACAATAATGC-ACTAAGAGTTTGATTCTTGAAAACTTCAAG 119
Query 117 AACCCTAGTTAATAACGATAATGGGTTCGAGAGTTTTGGCTTCCTTCTTTGTTTTCTTAA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 120 AACCCTAGTTAATAACGATAATGGGTTCGAGAGTTTTGGCTTCCTTCTTTGTTGTCTTGA 179
Query 177 TCTTCACGGTCATCACATTGCCTCCCACGATCCAAGCTTGCACTCCTTGTACTCGTCCTC 236
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 TCTTCACGGTCATCACATTGCCTCCAACGATCCAAGCTTGCACTCCTTGTACTCGTCCTC 239
Query 237 ATCCTCCGGTTCCGAAACCTCCACAACACGGCGGTGGTGGAGGTGGTGGTAGCAAGCCGC 296
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 240 ATCCTCCGGTTCCTAAACCTCCACACCACGGTGGTGGTGGAGGTGGTGGTAGCAAGCCGC 299
Query 297 CTCCACATCACGGTGGAAAAGGTGGTGGTAAACCCCCACCCCACGGTGGAAAAGGTGGAG 356
| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
Sbjct 300 CGCCACATCACGGTGGAAAATGTGGTGGTAAACCCCCACATCACGGTGGAAAAGGTGGGG 359
Query 357 GACCGCCGCATCATGGTggaggaggaggaggaggagggaAATCACCGCCGGTTGTTAGAC 416
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 GACCGCCGCATCATGGT------GGAGGAGGAGGAGGGAAATCACCGCCGGTTGTTAGAC 413
Query 417 CTCCTCCC-GTAGTGGTGAGGCCACCGCCAATCATAAGACCTCCTCCGGTCGTCTATCCA 475
|||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 414 CTCC-CCCGGTAGTGGTGAGACCACCGCCAATCATAAGACCTCCTCCGGTTGTCTATCCA 472
Query 476 CCACCAATTGTGAGGCCACCGCCAATCACAAGACCTCCCATCATAATCCCTCCAATTCAA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 473 CCACCAATTGTGAGGCCACCGCCAATCACAAGACCTCCCATCATAATCCCTCCCATTCAA 532
Query 536 CCACCGCCGGTTACAactcctccgggactcctccctccgatcacaactcctccgggactc 595
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 533 CCACCGCCGGTTACAACTCCTCCGGGACTTCTCCCGCCGATCACAACTCCTCCGGGACTC 592
Query 596 ctccctccagtcacaactcctccgGGACTTCTCCCTCCAGTCACAACTCCTCCAGGACTT 655
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 593 CTCCCTCCGGTCACAACTCCTCCGGGACTCCTCCCTCCGGTCACAACTCCTCCAGGACTT 652
Query 656 CTCCCTCCAATCATTAACCCACCTCCGGTCACAGTCCCACCACCATCGTCCGGCTATCCA 715
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 653 CTCCCTCCAATCATTAACCCACCTCCGGTCACAATCCCACCACCATCCTCCGGCTATCCA 712
Query 716 CCATATGGTCCACCTTCCGGTGGAGGAGGAGGAGGCGGCGGCAAACAACCAACGTGTCCG 775
|| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 713 CCGTATGGTCCACCTTCCGG---AGGAGGAGGAGGCGGCGGCAAACAACCAACATGTCCG 769
Query 776 ATCAATGCATTGAAGCTTGGAGCCTGTGTTGATGTTTTGGGAGGATTGATCCATATAGGA 835
||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 770 ATCAACGCATTGAAGCTTGGAGCTTGTGTTGACGTTTTGGGAGGATTGATTCATATAGGG 829
Query 836 CTTGGAAATCCGGTGGAGAATGTGTGTTGTCCAGTGTTACAAGGGTTACTTGAGCTAGAA 895
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 830 CTAGGAAATCCGGTGGAGAATGTGTGTTGTCCAGTGTTGCAAGGGTTACTTGAGCTAGAA 889
Query 896 GCAGCCGTTTGTCTTTGCACAACCATAAGACTTAAGCTTCTCAACTTAAACATCTTCATT 955
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 890 GCAGCCGTTTGTCTTTGCACAACCATAAGACTTAAGCTTCTTAACTTAAACATCTTCATT 949
Query 956 CCTCTTGCACTTCAAGCTCTTATCACTTGTGGGATCAATCCTCCTTCTGGTTTTGTCTGC 1015
|||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||
Sbjct 950 CCTCTTGCACTTCAAGCTCTCATCACTTGTGGGATCAACCCTCCTCCTGGTTTTGCCTGC 1009
Query 1016 CCTCCTCTCACTTGATCTAAAAACATCCCCTTGATTTAACAAATGTACGTATGATCAAGG 1075
|||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 1010 CCTCCTCTCACTTGATCTAAAA-CATCCC-TTGATTTAACAAATGTACGTACGATCAAGG 1067
Query 1076 GTGGTTTTCGAGGCTTTTGTAATAATTCAAATATATATGTGGTACTTTTGATTATCAGGT 1135
|| || ||||||| ||||||||| ||||||||||||||||||||| || |||| ||
Sbjct 1068 GT--TTAAA-AGGCTTTGGTAATAATTTAAATATATATGTGGTACTTTTAATGATCATGT 1124
Query 1136 TTGTTGATTATCTAGGGTTTTAATTAACAAGTGTTGTTTTCTGTTATTGTCGTTGTTGTT 1195
||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||
Sbjct 1125 TTGTTGATTATCTAGGGTTTTAA----CAAGTGTTGCTTTCTGTTAATGTCGTTGTTGTT 1180
Query 1196 ATAATTAAGCTAGGGTTTTTGCATGGCCTTCTTTAAATTTCTTTTGCGTGTAATCTTTCG 1255
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1181 ATAATTAAGCTAGGGTTTTTGCATGGCCTTCTTTAA-TTTCTTTTG--TGTAATCTTTCG 1237
Query 1256 TACGTTTTGTATTGTTCCAGCTTCTCGCTGTCTATCAATTTGACTCT 1302
| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1238 T---TTT-GTATTGTTCCAGCTTCTCGCTGTCTATCCATTTGACTCT 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5