BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62500.1 Length=1458 Score E Sequences producing significant alignments: (Bits) Value Ahg475096 jgi|Araly1|475096|fgenesh2_kg.2__226__AT1G62500.1 1903 0.0 > Ahg475096 jgi|Araly1|475096|fgenesh2_kg.2__226__AT1G62500.1 Length=1322 Score = 1903 bits (1030), Expect = 0.0 Identities = 1220/1307 (93%), Gaps = 32/1307 (2%) Strand=Plus/Plus Query 1 GGTTAACACCCATACAAGAGTCACGGGTCACATTTAAGCTTCAACTATATATTTGCATGT 60 |||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||| Sbjct 1 GGTTTACACCCATACAAGAGTCACGGGTCACATTTAAGCTTCACCTATATAGTTACATGT 60 Query 61 TATTTGCCAAAAGGATTTGACAATAATGCAAC-AAGAGTTTCA---TTGAAAATTTCAAG 116 || ||||| |||||||||||||||||||| || |||||||| | ||||||| |||||| Sbjct 61 TACTTGCCCAAAGGATTTGACAATAATGC-ACTAAGAGTTTGATTCTTGAAAACTTCAAG 119 Query 117 AACCCTAGTTAATAACGATAATGGGTTCGAGAGTTTTGGCTTCCTTCTTTGTTTTCTTAA 176 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 120 AACCCTAGTTAATAACGATAATGGGTTCGAGAGTTTTGGCTTCCTTCTTTGTTGTCTTGA 179 Query 177 TCTTCACGGTCATCACATTGCCTCCCACGATCCAAGCTTGCACTCCTTGTACTCGTCCTC 236 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 180 TCTTCACGGTCATCACATTGCCTCCAACGATCCAAGCTTGCACTCCTTGTACTCGTCCTC 239 Query 237 ATCCTCCGGTTCCGAAACCTCCACAACACGGCGGTGGTGGAGGTGGTGGTAGCAAGCCGC 296 ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 240 ATCCTCCGGTTCCTAAACCTCCACACCACGGTGGTGGTGGAGGTGGTGGTAGCAAGCCGC 299 Query 297 CTCCACATCACGGTGGAAAAGGTGGTGGTAAACCCCCACCCCACGGTGGAAAAGGTGGAG 356 | |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | Sbjct 300 CGCCACATCACGGTGGAAAATGTGGTGGTAAACCCCCACATCACGGTGGAAAAGGTGGGG 359 Query 357 GACCGCCGCATCATGGTggaggaggaggaggaggagggaAATCACCGCCGGTTGTTAGAC 416 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 360 GACCGCCGCATCATGGT------GGAGGAGGAGGAGGGAAATCACCGCCGGTTGTTAGAC 413 Query 417 CTCCTCCC-GTAGTGGTGAGGCCACCGCCAATCATAAGACCTCCTCCGGTCGTCTATCCA 475 |||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 414 CTCC-CCCGGTAGTGGTGAGACCACCGCCAATCATAAGACCTCCTCCGGTTGTCTATCCA 472 Query 476 CCACCAATTGTGAGGCCACCGCCAATCACAAGACCTCCCATCATAATCCCTCCAATTCAA 535 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 473 CCACCAATTGTGAGGCCACCGCCAATCACAAGACCTCCCATCATAATCCCTCCCATTCAA 532 Query 536 CCACCGCCGGTTACAactcctccgggactcctccctccgatcacaactcctccgggactc 595 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 533 CCACCGCCGGTTACAACTCCTCCGGGACTTCTCCCGCCGATCACAACTCCTCCGGGACTC 592 Query 596 ctccctccagtcacaactcctccgGGACTTCTCCCTCCAGTCACAACTCCTCCAGGACTT 655 |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 593 CTCCCTCCGGTCACAACTCCTCCGGGACTCCTCCCTCCGGTCACAACTCCTCCAGGACTT 652 Query 656 CTCCCTCCAATCATTAACCCACCTCCGGTCACAGTCCCACCACCATCGTCCGGCTATCCA 715 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 653 CTCCCTCCAATCATTAACCCACCTCCGGTCACAATCCCACCACCATCCTCCGGCTATCCA 712 Query 716 CCATATGGTCCACCTTCCGGTGGAGGAGGAGGAGGCGGCGGCAAACAACCAACGTGTCCG 775 || ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 713 CCGTATGGTCCACCTTCCGG---AGGAGGAGGAGGCGGCGGCAAACAACCAACATGTCCG 769 Query 776 ATCAATGCATTGAAGCTTGGAGCCTGTGTTGATGTTTTGGGAGGATTGATCCATATAGGA 835 ||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| Sbjct 770 ATCAACGCATTGAAGCTTGGAGCTTGTGTTGACGTTTTGGGAGGATTGATTCATATAGGG 829 Query 836 CTTGGAAATCCGGTGGAGAATGTGTGTTGTCCAGTGTTACAAGGGTTACTTGAGCTAGAA 895 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 830 CTAGGAAATCCGGTGGAGAATGTGTGTTGTCCAGTGTTGCAAGGGTTACTTGAGCTAGAA 889 Query 896 GCAGCCGTTTGTCTTTGCACAACCATAAGACTTAAGCTTCTCAACTTAAACATCTTCATT 955 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 890 GCAGCCGTTTGTCTTTGCACAACCATAAGACTTAAGCTTCTTAACTTAAACATCTTCATT 949 Query 956 CCTCTTGCACTTCAAGCTCTTATCACTTGTGGGATCAATCCTCCTTCTGGTTTTGTCTGC 1015 |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||| Sbjct 950 CCTCTTGCACTTCAAGCTCTCATCACTTGTGGGATCAACCCTCCTCCTGGTTTTGCCTGC 1009 Query 1016 CCTCCTCTCACTTGATCTAAAAACATCCCCTTGATTTAACAAATGTACGTATGATCAAGG 1075 |||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| Sbjct 1010 CCTCCTCTCACTTGATCTAAAA-CATCCC-TTGATTTAACAAATGTACGTACGATCAAGG 1067 Query 1076 GTGGTTTTCGAGGCTTTTGTAATAATTCAAATATATATGTGGTACTTTTGATTATCAGGT 1135 || || ||||||| ||||||||| ||||||||||||||||||||| || |||| || Sbjct 1068 GT--TTAAA-AGGCTTTGGTAATAATTTAAATATATATGTGGTACTTTTAATGATCATGT 1124 Query 1136 TTGTTGATTATCTAGGGTTTTAATTAACAAGTGTTGTTTTCTGTTATTGTCGTTGTTGTT 1195 ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| Sbjct 1125 TTGTTGATTATCTAGGGTTTTAA----CAAGTGTTGCTTTCTGTTAATGTCGTTGTTGTT 1180 Query 1196 ATAATTAAGCTAGGGTTTTTGCATGGCCTTCTTTAAATTTCTTTTGCGTGTAATCTTTCG 1255 |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 1181 ATAATTAAGCTAGGGTTTTTGCATGGCCTTCTTTAA-TTTCTTTTG--TGTAATCTTTCG 1237 Query 1256 TACGTTTTGTATTGTTCCAGCTTCTCGCTGTCTATCAATTTGACTCT 1302 | ||| |||||||||||||||||||||||||||| |||||||||| Sbjct 1238 T---TTT-GTATTGTTCCAGCTTCTCGCTGTCTATCCATTTGACTCT 1280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54545230840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5