BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62520.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475095 jgi|Araly1|475095|fgenesh2_kg.2__225__AT1G62520.1 1519 0.0
> Ahg475095 jgi|Araly1|475095|fgenesh2_kg.2__225__AT1G62520.1
Length=1082
Score = 1519 bits (822), Expect = 0.0
Identities = 1012/1099 (92%), Gaps = 31/1099 (3%)
Strand=Plus/Plus
Query 1 CTTCTGCTTCTGTTTCTTTTCCAAGTTTTTAAagagagagagagagaCTGAAAGaaa-aa 59
|||||||||||||||||||||||||||||| | | |||||||| | |||||||| ||
Sbjct 1 CTTCTGCTTCTGTTTCTTTTCCAAGTTTTT--A-A-AGAGAGAG-G---GAAAGAAACAA 52
Query 60 caaaaaaCAGAGAGC-TTTGGTTCCGGATCTTGATTATGGCAAATGGGTGGGTCAAATCG 118
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 53 -AAAAAACAGAGAGCATTT-GTTCCGGATCTTGATTATGGCAAGCGGGTGGGTCAAATCG 110
Query 119 TTACAATGCAAGTCGAAAGCTTTCGATGATGTTTACAATCCGATTAAAAACCCGAACCCG 178
||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 111 TTACAATGCAAATCTAAAGCTTTCGATGATGTTTATAATCCGATTAAAAACCCTAACCCG 170
Query 179 AATCCGAGCCCGAGTCCGAAACATCTCATGTCAAGCTACAGTTGCAGAAAAAGCACACAG 238
||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 171 AATCCGAACCCGAGTCCGAAACATCTCATGTCAAGTTACAGTTGCAGAAGAAGCACACAG 230
Query 239 AGTCTAAAAGATGTGATCgaaaccaaaaaacccaaacctaaaccgaagaaaccc-aatcc 297
||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |
Sbjct 231 AGTCTCAAAGATGTGATCGAAACCAAAAAAACCAAACCAAAACCGAAGAAACCCAAAT-C 289
Query 298 aaaaccggataaacgagaaaccgacccgGTTTTATCACCATCAACCCGGATCCGATCAAC 357
|||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 290 AAAACCCGATAAACGAGAACCCGACCCGGTTTTATCTCCTTCAACCCGGATCCGATCAAC 349
Query 358 CGGAGTTCGTGATCGTGATCCGTTTTTACCGACATTGACGGAGCTATCGGAAGGTCATCA 417
||||| |||||||||||| |||||| ||||||| || |||||||| |||||||||||||
Sbjct 350 CGGAGCTCGTGATCGTGACCCGTTTCTACCGACGTTAACGGAGCTCGCGGAAGGTCATCA 409
Query 418 GTCACGTAATGTGGTGGAGATTATCTTT-CAGACGAGCTGGGGTCCGAAACCGTTTTCGG 476
||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 410 GTCGCGTAATGTGGTGGAGATTAT-TTTCCAGACGAGTTGGGGTCCGAAACCGTTTTCGG 468
Query 477 GTCGGGTCGAAATGATTTTCAAAGTGCAAAACGGGTCTAAGACTTTGACCCGGTTCGAAG 536
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 469 GTCGGGTAGAAATGATTTTCAAAGTGCAAAACGGGTCTAAGACTTTGACCCGGTTCGAGG 528
Query 537 AGTATCGTGAAGCCGTGAAAGCTAGGAGCGTGGGGAAAGCGCGTGAAGAGAACGCGCGTT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AGTATCGTGAAGCCGTGAAAGCTAGGAGCGTGGGGAAAGCGCGTGAAGAGAACGCGCGTT 588
Query 597 CGGTTGCCGACGGGAATGAAACAATGAGGTTTTACTGTTTGGGTCCAAGTTACGGTGGAG 656
| || ||||||||||| || || ||||||||||||||||||||||| |||||||| || |
Sbjct 589 CCGTAGCCGACGGGAACGAGACCATGAGGTTTTACTGTTTGGGTCCGAGTTACGGCGGCG 648
Query 657 GTGGCAG-CGCGTGGGGTATTTTGGGAGGAAAAGGCGGTGGCGCGTCGATATATACGTTT 715
|||| || ||||||||||||||| ||||||||||||| |||||||||||| || |||||
Sbjct 649 GTGG-AGGCGCGTGGGGTATTTTAGGAGGAAAAGGCGTTGGCGCGTCGATTTACACGTTC 707
Query 716 GCCGGAAGTAGCACGGCGAATGAGAAAGCTGGCGGTGGGAAAGGGAGGAAGGCAATGTTG 775
||||||||||| | ||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 708 GCCGGAAGTAGTATGGCAAATGAGAAAGCCGGCGGTGGGAAAGGGAGGAAGGCTATGTTG 767
Query 776 GTTTGTCGGGTCATAGCGGGTCGGGTCACTAAGCAAAACGAGTTAAAGTATGACTCGGAT 835
||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 768 GTTTGTCGGGTTATAGCGGGTCGGGTCACGAAGCAAAACGAGTTAAGGTATGACTCGGAT 827
Query 836 TTGAGGTCACGGTTTGACTCAGTGAGTGGTGACGACGGAGAGTTGCTCGTGTTCGATACA 895
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 828 TTGAGGTCACGGTTTGACTCAGTGAGTGGTGACGACGGCGAGTTGCTCGTGTTTGATACA 887
Query 896 CGTGCGGTGTTGCCTTGTTTTCTCATAATCTATCGGTTGTaaaaattc--aaaaaaataa 953
|||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||
Sbjct 888 CGTGCGGTGTTGCCTTGTTTTCTCATAATCTACCGTTTGTAAAAATTCCCAAAAAAAAAA 947
Query 954 aaG---TTATTTTAGTTTCTAACTTTTTGACATTGTAATTTCATTTATCAACGCAATTTT 1010
|| |||||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 948 AAAAACTTATTTTA-TT---AACTTTT-GACATTGTAATTTCATTTATCAACGCAATTTT 1002
Query 1011 CCCCTAATGTTTAGGGATTTGTTT-T-TATTTCCAATGTAAAATTGGTAGAAAATTGTGT 1068
|||||||||||||||||||| ||| | |||||||| |||| |||||||||||||||||||
Sbjct 1003 CCCCTAATGTTTAGGGATTT-TTTATATATTTCCAGTGTATAATTGGTAGAAAATTGTGT 1061
Query 1069 TGATAAATGGTAATTAATT 1087
|||||||||||||||||||
Sbjct 1062 TGATAAATGGTAATTAATT 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5