BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62530.1 Length=1065 Score E Sequences producing significant alignments: (Bits) Value Ahg315144 jgi|Araly1|315144|fgenesh1_pm.C_scaffold_2000177 747 0.0 > Ahg315144 jgi|Araly1|315144|fgenesh1_pm.C_scaffold_2000177 Length=975 Score = 747 bits (404), Expect = 0.0 Identities = 524/579 (91%), Gaps = 20/579 (3%) Strand=Plus/Plus Query 127 ATGTATCTCCACGGTTTGTCCAAGGACGAAATTTTGTGCAAGAAACGTTTTGAATCGTAT 186 ||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||| Sbjct 1 ATGTATCTCCACGGTTTGTCCAACGACGATATTTCGTGTAAGAAACGTTTTGAATCGTAT 60 Query 187 GAAGAAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGGTGTAT 246 ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 61 GAAGAAAGTTCTAAGAAGAATCAAATCAGAATGGTAACTCTTTTTGGGCAGCAGGTGTAT 120 Query 247 A-CAGC-AAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATAGAAACTGCCTTA 304 | | || || || ||| |||||||| ||| |||| ||||||||||||||||||||||||| Sbjct 121 ATC-GCGAA-AGGCGAAAGCTTTGTTTCGGGTAACGAGCAGGTGAATAGAAACTGCCTTA 178 Query 305 ATCCACTGATGGAAGATTGTGATCTTCAACTTCCT-GAAAATCATGAAAGCGTCGAATAC 363 | ||||||||| |||||||||||||| |||| || |||||||||||||||||||||| | Sbjct 179 ACCCACTGATGAAAGATTGTGATCTTTTACTT-CTCGAAAATCATGAAAGCGTCGAATGC 237 Query 364 CGAGAATTCCACAGCATTGGTTCTTCCCAAGATAGCATAGATTTGAGGATTGAAGCATAT 423 | |||||||||||||||||||| ||||||||||| ||| | | |||||||||||||| Sbjct 238 CAAGAATTCCACAGCATTGGTTGTTCCCAAGATACCAT--A--T--GGATTGAAGCATAT 291 Query 424 GGCACAAATTTGTGTGGCAAGAAAAGTGAGAAAGTGAATAT-TTCAGATGGATCATGTTT 482 ||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |||| Sbjct 292 GGCACAAATTTGTTTGGCAAGAAAAGTGAGAAAGTGAATATCTT-AGATGGATCAGGTTT 350 Query 483 GCTGGATCTTAATAAACCCCCGGCTTACGAGCCGGTTT-CAATTGATC-ATCAATGCGGT 540 |||||||||||||||| |||||||||| |||||||||| ||| ||| | ||||||||||| Sbjct 351 GCTGGATCTTAATAAAACCCCGGCTTATGAGCCGGTTTCCAA-TGA-CTATCAATGCGGT 408 Query 541 TTAGATGGTGTACATGAAAAAGATTGTTCAGCATCTCCAGCTTCATGTTGCACCGCAGAA 600 ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 409 TTAAATGGTGTCCATGAAAAAGATTGGGCAGCATCTCCAGCTTCATGTTGCACCGCAGAA 468 Query 601 AACAATTCAAGGACTGAAGGAGAAGATTCGTGTGAAGTAATTCAAATGGCAGCTGAATGT 660 |||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 469 AACAGTTCAAAGATTGAAGGTGAAGATTCGTGTGAAGTAATTCAAATGGCAGCTGAATGT 528 Query 661 TTAGTCCACATCTCAGCTGTTTCTCAT-AATCAAAGTCA 698 ||||||||||| ||||| ||| ||| | ||||||||||| Sbjct 529 TTAGTCCACATTTCAGCGGTTACTC-TCAATCAAAGTCA 566 Score = 523 bits (283), Expect = 9e-148 Identities = 340/367 (93%), Gaps = 5/367 (1%) Strand=Plus/Plus Query 700 GGTGTCCAAGAACCGGGTCGTTCTTGCGATTCATTTGAGCTACATACTTTAGAAATAAGA 759 |||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| Sbjct 598 GGTGTCCAAGAACCGGGTCGATCTTGCGATTCATTCGAGCTACACACTTTAGGAATAAGA 657 Query 760 GAAACTGTCCCTGAAGAGCTCTGTTGTGTATCATCAAAGGCCATATATGACTTCAGTAAG 819 |||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 658 GAAACTATCCCTGAAGAGCTCTGTTGTGTATCATCAAAGGCCATAGATAACTTCAGTAAC 717 Query 820 AAGAAAGAGTTTGGAGTCAAGCTGAGAAGAGGGAGGAGAATGAAGAATTTCCAAAAGGAG 879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 718 AAGAAAGAGTTTGGAGTCAAGCTGAGAAGAGGGAGGAGAATGAAGAATTTCCAAAAAGAG 777 Query 880 ATACTCCCGGAGCTTGTATCGCTCTCTAGACATGAGATTCGAGAAGATATTAACCTCTTA 939 ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 778 ATACTCCCGGAACTTGTATCGCTCTCTAGACATGAGATCCGAGAAGATATAAACCTCTTA 837 Query 940 GAGACGGTTTTTAGATCGAGAGATTACAAGAAAATGCAGGGGAAGA---CTAAAGATGGA 996 ||||| |||| ||||||| |||||||||||| ||||||||||||| ||||||||||| Sbjct 838 GAGACTATTTTGAGATCGAAAGATTACAAGAAGATGCAGGGGAAGAATACTAAAGATGGA 897 Query 997 AAATGCAAACCAAACCTGAGAAACACCAAAGGTTTGACTCAAACGTATGTAGGTAAAA-G 1055 ||||| | |||||||| |||||||| ||||||||||||||||| |||||||||||||| | Sbjct 898 AAATGTAGACCAAACCGGAGAAACAACAAAGGTTTGACTCAAAGGTATGTAGGTAAAATG 957 Query 1056 AAGGAGA 1062 | ||||| Sbjct 958 A-GGAGA 963 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39647833680 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5