BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62530.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315144 jgi|Araly1|315144|fgenesh1_pm.C_scaffold_2000177 747 0.0
> Ahg315144 jgi|Araly1|315144|fgenesh1_pm.C_scaffold_2000177
Length=975
Score = 747 bits (404), Expect = 0.0
Identities = 524/579 (91%), Gaps = 20/579 (3%)
Strand=Plus/Plus
Query 127 ATGTATCTCCACGGTTTGTCCAAGGACGAAATTTTGTGCAAGAAACGTTTTGAATCGTAT 186
||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||
Sbjct 1 ATGTATCTCCACGGTTTGTCCAACGACGATATTTCGTGTAAGAAACGTTTTGAATCGTAT 60
Query 187 GAAGAAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGGTGTAT 246
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 61 GAAGAAAGTTCTAAGAAGAATCAAATCAGAATGGTAACTCTTTTTGGGCAGCAGGTGTAT 120
Query 247 A-CAGC-AAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATAGAAACTGCCTTA 304
| | || || || ||| |||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 121 ATC-GCGAA-AGGCGAAAGCTTTGTTTCGGGTAACGAGCAGGTGAATAGAAACTGCCTTA 178
Query 305 ATCCACTGATGGAAGATTGTGATCTTCAACTTCCT-GAAAATCATGAAAGCGTCGAATAC 363
| ||||||||| |||||||||||||| |||| || |||||||||||||||||||||| |
Sbjct 179 ACCCACTGATGAAAGATTGTGATCTTTTACTT-CTCGAAAATCATGAAAGCGTCGAATGC 237
Query 364 CGAGAATTCCACAGCATTGGTTCTTCCCAAGATAGCATAGATTTGAGGATTGAAGCATAT 423
| |||||||||||||||||||| ||||||||||| ||| | | ||||||||||||||
Sbjct 238 CAAGAATTCCACAGCATTGGTTGTTCCCAAGATACCAT--A--T--GGATTGAAGCATAT 291
Query 424 GGCACAAATTTGTGTGGCAAGAAAAGTGAGAAAGTGAATAT-TTCAGATGGATCATGTTT 482
||||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 292 GGCACAAATTTGTTTGGCAAGAAAAGTGAGAAAGTGAATATCTT-AGATGGATCAGGTTT 350
Query 483 GCTGGATCTTAATAAACCCCCGGCTTACGAGCCGGTTT-CAATTGATC-ATCAATGCGGT 540
|||||||||||||||| |||||||||| |||||||||| ||| ||| | |||||||||||
Sbjct 351 GCTGGATCTTAATAAAACCCCGGCTTATGAGCCGGTTTCCAA-TGA-CTATCAATGCGGT 408
Query 541 TTAGATGGTGTACATGAAAAAGATTGTTCAGCATCTCCAGCTTCATGTTGCACCGCAGAA 600
||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 409 TTAAATGGTGTCCATGAAAAAGATTGGGCAGCATCTCCAGCTTCATGTTGCACCGCAGAA 468
Query 601 AACAATTCAAGGACTGAAGGAGAAGATTCGTGTGAAGTAATTCAAATGGCAGCTGAATGT 660
|||| ||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 469 AACAGTTCAAAGATTGAAGGTGAAGATTCGTGTGAAGTAATTCAAATGGCAGCTGAATGT 528
Query 661 TTAGTCCACATCTCAGCTGTTTCTCAT-AATCAAAGTCA 698
||||||||||| ||||| ||| ||| | |||||||||||
Sbjct 529 TTAGTCCACATTTCAGCGGTTACTC-TCAATCAAAGTCA 566
Score = 523 bits (283), Expect = 9e-148
Identities = 340/367 (93%), Gaps = 5/367 (1%)
Strand=Plus/Plus
Query 700 GGTGTCCAAGAACCGGGTCGTTCTTGCGATTCATTTGAGCTACATACTTTAGAAATAAGA 759
|||||||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||
Sbjct 598 GGTGTCCAAGAACCGGGTCGATCTTGCGATTCATTCGAGCTACACACTTTAGGAATAAGA 657
Query 760 GAAACTGTCCCTGAAGAGCTCTGTTGTGTATCATCAAAGGCCATATATGACTTCAGTAAG 819
|||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 658 GAAACTATCCCTGAAGAGCTCTGTTGTGTATCATCAAAGGCCATAGATAACTTCAGTAAC 717
Query 820 AAGAAAGAGTTTGGAGTCAAGCTGAGAAGAGGGAGGAGAATGAAGAATTTCCAAAAGGAG 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 AAGAAAGAGTTTGGAGTCAAGCTGAGAAGAGGGAGGAGAATGAAGAATTTCCAAAAAGAG 777
Query 880 ATACTCCCGGAGCTTGTATCGCTCTCTAGACATGAGATTCGAGAAGATATTAACCTCTTA 939
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 778 ATACTCCCGGAACTTGTATCGCTCTCTAGACATGAGATCCGAGAAGATATAAACCTCTTA 837
Query 940 GAGACGGTTTTTAGATCGAGAGATTACAAGAAAATGCAGGGGAAGA---CTAAAGATGGA 996
||||| |||| ||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 838 GAGACTATTTTGAGATCGAAAGATTACAAGAAGATGCAGGGGAAGAATACTAAAGATGGA 897
Query 997 AAATGCAAACCAAACCTGAGAAACACCAAAGGTTTGACTCAAACGTATGTAGGTAAAA-G 1055
||||| | |||||||| |||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 898 AAATGTAGACCAAACCGGAGAAACAACAAAGGTTTGACTCAAAGGTATGTAGGTAAAATG 957
Query 1056 AAGGAGA 1062
| |||||
Sbjct 958 A-GGAGA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5