BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62540.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315143 jgi|Araly1|315143|fgenesh1_pm.C_scaffold_2000176 1679 0.0
Ahg475092 jgi|Araly1|475092|fgenesh2_kg.2__222__AT1G62560.1 1400 0.0
Ahg924738 jgi|Araly1|924738|scaffold_200299.1 1068 0.0
Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231 291 2e-77
Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1 228 1e-58
> Ahg315143 jgi|Araly1|315143|fgenesh1_pm.C_scaffold_2000176
Length=1386
Score = 1679 bits (909), Expect = 0.0
Identities = 1236/1393 (89%), Gaps = 26/1393 (2%)
Strand=Plus/Plus
Query 77 ATGGCACCAGC-TCAAAACCCGATCAGTTCTCAACACGTGGTAGTCATCGGAGCCGGAGC 135
|||| |||| | || |||||| |||| |||||||| |||| || || |||||||||||
Sbjct 1 ATGGAACCAACTTC-AAACCCAATCAACTCTCAACATGTGGCGGTGATTGGAGCCGGAGC 59
Query 136 AGCCGGTCTCGTAGCGGCTAGGGAGCTCAGTCGTGAAGGTCACACTGTTGTCGTATTAGA 195
|||||||||| || | ||||| |||||| ||||||||||||||| |||||||| || ||
Sbjct 60 AGCCGGTCTCATAACAGCTAGAGAGCTCCTTCGTGAAGGTCACACCGTTGTCGTCTTTGA 119
Query 196 GCGGGAGAAAGAAGTAGGAGGTCTCTGGATCTATTCACCCAAAGCCGAATCCGACCCGCT 255
|||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 120 ACGGGAGAAAGAAGTGGGAGGTCTTTGGATCTATTCACCTAAAACCGAATCCGACCCGCT 179
Query 256 TAGCCTTGA-CCCAACCCGTTCCATAGTCCACTCGAGCGTGTACGAGTCTCTCCGAACCA 314
|||||| || || || ||| | ||||||||| |||||||| |||||||||||||||||||
Sbjct 180 TAGCCTCGATCCGAA-CCGATACATAGTCCATTCGAGCGTCTACGAGTCTCTCCGAACCA 238
Query 315 ACCTCCC-ACGAGAATGTATGGGTTTCACGGAC-TTCCCTTTTGTGCCTCGTTTCGATGA 372
| |||| | ||||| | |||||| ||| |||| ||||||||| |||| ||||| |||||
Sbjct 239 ATGTCCCGA-GAGAAAGCATGGGTGTCAGGGACTTTCCCTTTT-TGCCACGTTTTGATGA 296
Query 373 CGAGTCAAGAGACTCGAGACGGTATCCGAGCCACATG-GAAGTTCTTGCGTACCTTCAAG 431
| ||||||||| |||||||||| ||||| |||| | ||||||||||||||||||||||
Sbjct 297 TGTCTCAAGAGACCCGAGACGGTACCCGAGTCACA-GAGAAGTTCTTGCGTACCTTCAAG 355
Query 432 ACTTTGCTAGAGAGTTTAACCTAGAGGAGATGGTTCGGTTCGAGATCGAGGTGGTTCGGG 491
||||||||||||||||||| ||||||| ||||| |||||||||| |||||| ||||| |
Sbjct 356 ACTTTGCTAGAGAGTTTAAAATAGAGGACATGGTCCGGTTCGAGACCGAGGTCGTTCGAG 415
Query 492 TTGAACCGGTTAACGGGAAATGGAGGGTCTGGT-CTA-AAACCTCTGGCG-GTGTTTCCC 548
||||||||||| ||||||||||||||||| ||| | | ||| || || | || ||||
Sbjct 416 TTGAACCGGTTGACGGGAAATGGAGGGTCCGGTCCGAGAAA--TCGGGAGATTG-TTCCA 472
Query 549 ACGATGAGATCTTTGACGCCGTTGTTGTTTGCAGTGGACACTATACAGAACCAAACGTTG 608
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 473 ACGATGAGATCTTTGACGCCGTTGTGGTTTGCAGTGGACATTATACAGAACCAAACGTCG 532
Query 609 CT-CATATTCCTGGTATAAAATCGTGGCCAGGAAAGCAGATCCATAGCCACAACTACAGA 667
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 533 -TGCATATTCCTGGTATAAATTCGTGGCCAGGAAAGCAGATCCATAGCCACAACTACAGA 591
Query 668 GTTCCTGGGCCATTCGAAAACGAGGTGGTGGTGGTCATCGGAAATTTTGCTAGCGGTGCC 727
|||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 592 GTTCCTGGTCCATTCGAAAACGAGGTGGTGGTAGTGATCGGAAATTTTGCAAGCGGTGCT 651
Query 728 GATATTAGTAGGGACATAGCTAAGGTCGCGAAAGAAGTTCACATTGCATCTAGAGCGAGT 787
||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 652 GATATTAGTAGGGACATAGCTCAGGTCGCGAAAGAAGTTCATATTGCGTCTAGAGCGAGT 711
Query 788 GAATTTGATACATACGAAAAGCTTCCCGTGCCTCGGAACAATCTATGGATTCATTCGGAA 847
|||| |||||||||| |||||||||| ||||||| ||||| |||||||||||||| ||
Sbjct 712 GAATCTGATACATACAAAAAGCTTCCTGTGCCTCATAACAACCTATGGATTCATTCCGAG 771
Query 848 ATAGACACGGCATATGAAGATGGGTCCATTGTTTTCAAAAACGGGAAGGTGGTATATGCT 907
|||||||| || ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 772 ATAGACACCGCCCATGAAGATGGGTCAATTGTTTTTAAAAACGGGAAGGTGGTATATGCA 831
Query 908 GATAGCATTGTGTATTGCACTGGATATAAATATCGCTTCACATTCCTTGAAACCAATGGC 967
||||||||||| |||||||||||||| || |||| |||| |||| |||||||||||||||
Sbjct 832 GATAGCATTGTATATTGCACTGGATACAAGTATCACTTCCCATTTCTTGAAACCAATGGC 891
Query 968 TATATGAACATTGATGAAAACCGCGTAGAACATCTATACAAGCATGTATTTCCACCTGCG 1027
||||||| |||||||||||||||| | || | ||||||||||||||| |||||||| |||
Sbjct 892 TATATGAGCATTGATGAAAACCGCATTGATCCTCTATACAAGCATGTTTTTCCACCCGCG 951
Query 1028 CTTTCTCCTGGTCTTTCATTCGTTGGTTTACCATCGATGGGCATACAATTTGTTATGTTT 1087
||| | ||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct 952 CTTGCCCCTGGTCTTTCTTTCATTGGTTTACCAGCGATGGGCATACAGTTTGTTATGTTT 1011
Query 1088 GAAATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCAAGG-CGGGTTACACTTCCCACAGA 1146
||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||| || |
Sbjct 1012 GAAATCCAAAGCAAATGGGTGGCAGCAGTCTTGGC-AGGACGGGTTAAACTTCCCTCACA 1070
Query 1147 AGATAAGATGATGGAAGATATTAGTGCGTGGTATGCATCGCTTGATGCGGTAGG-CATTC 1205
|||||||||||| ||||| |||| | ||||||||||||||||| ||||| |||| | |||
Sbjct 1071 AGATAAGATGATAGAAGACATTAATTCGTGGTATGCATCGCTTCATGCGTTAGGTC-TTC 1129
Query 1206 CTAAAAGATATACACATAAATTGGGTAAAATTCAGAGTGAGTACCTCAATTGGGTCGCAG 1265
| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| |
Sbjct 1130 CCAAAAGATATACACATAAATTGGGTAAAATTCAGTCTGAGTACCTGAATTGGATCGCGG 1189
Query 1266 AAGAATGTGGTTGTCCGCTCGTTGAACATTGGAGAAATCAACAAATCGTCCGCGGATACC 1325
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AAGAATGTGGATGTCCGCTCGTTGAACATTGGAGAAATCAACAAATCGTCCGCGGATACG 1249
Query 1326 AGAGACTTGTCTCACACCCAGAAACTTATCGCGATGAATGGGACGACAATGACCTTATGG 1385
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1250 AGAGACTTGTCTCCCAACCAGAAACTTATCGCGATGAATGGGACGACAATGATCTTATGG 1309
Query 1386 AAGAAGCTTACGAGGACTTTGCTAGGAAGAAATTAATTAGTT-TCCATCCTTCCCATATC 1444
||||||||||| |||| |||| |||||| || |||||||||| || ||||||||||| ||
Sbjct 1310 AAGAAGCTTACAAGGAATTTGGTAGGAATAAGTTAATTAGTTCTC-ATCCTTCCCATTTC 1368
Query 1445 CTCT-AATCAAGA 1456
|| | || |||||
Sbjct 1369 CT-TGAACCAAGA 1380
> Ahg475092 jgi|Araly1|475092|fgenesh2_kg.2__222__AT1G62560.1
Length=1414
Score = 1400 bits (758), Expect = 0.0
Identities = 1171/1372 (85%), Gaps = 22/1372 (2%)
Strand=Plus/Plus
Query 77 ATGGCACCAGCTCAAAACCCGATCAGTTCTCAACACGTGGTAGTCATCGGAGCCGGAGCA 136
||||||||||| |||||||| |||| |||| ||||||||| ||| |||||||||||||||
Sbjct 1 ATGGCACCAGCACAAAACCCAATCACTTCTAAACACGTGGCAGTGATCGGAGCCGGAGCA 60
Query 137 GCCGGTCTCGTAGCGGCTAGGGAGCTCAGTCGTGAAGGTCACACTGTTGTCGTATTA-GA 195
|||||| || || || ||||||||||| ||||||||||||||| ||| || || || ||
Sbjct 61 GCCGGTATCATAACGTCTAGGGAGCTCCGTCGTGAAGGTCACAGTGTCGTTGT-GTATGA 119
Query 196 GCGGGAGAAAGAAGTAGGAGGTCTCTGGATCTATTCACCCAAAGCCGAATCCGACCCGCT 255
||||||||| |||| || ||||||||| | || |||| ||| |||| |||||||| ||
Sbjct 120 ACGGGAGAAACAAGTGGGTGGTCTCTGGGTTTACACACCTAAATCCGATTCCGACCCACT 179
Query 256 TAGCCTTGACCCAACCCGTTCCATAGTCCACTCGAGCGTGTACGAGTCTCTCCGAACCAA 315
|||||||||||| ||||| |||| ||||||||| ||| | ||||||||||||||||||||
Sbjct 180 TAGCCTTGACCCGACCCGATCCAAAGTCCACTCTAGCATCTACGAGTCTCTCCGAACCAA 239
Query 316 CCTCCC-ACGAGAATGTATGGGTTTCACGGACTTCCC-TTTTGTGCCTCGTTTCGATGAC 373
|||| | ||||| |||||||| ||| ||||||||| |||| |||| ||||| ||||||
Sbjct 240 TGTCCCGA-GAGAAAGTATGGGTGTCAGGGACTTCCCGTTTT-TGCCACGTTTTGATGAC 297
Query 374 GAGTCAAGAGACTCGAGACGGTATCCGAGCCACATGGAAGTTCTTGCGTACCTTCAAGAC 433
|||||||||||| ||||||||||||| | |||| ||||||||||||||| ||||||||
Sbjct 298 GAGTCAAGAGACCCGAGACGGTATCCAAATCACAGGGAAGTTCTTGCGTATATTCAAGAC 357
Query 434 TTTGCTAGAGAGTTTAACCTAGAGGAGATGGTTCGGTTCGAGATCGAGGTGGTTCGGGTT 493
||||||||||||||||| ||||||||||| | |||||||||| ||||||||||||||||
Sbjct 358 TTTGCTAGAGAGTTTAAAATAGAGGAGATGATCCGGTTCGAGACCGAGGTGGTTCGGGTT 417
Query 494 GAACCGGTTAACGGGAAATGGAGGGTCTGGTCTAAAACCTCTGGCGGTGTT-TCCCACGA 552
||||||||| | ||||||||||||||| ||| |||| || ||||| ||| | | ||
Sbjct 418 GAACCGGTTGATGGGAAATGGAGGGTCCAGTCCAAAAAATCCGGCGG-GTTCTTGGAAGA 476
Query 553 TGAGATCTTTGACGCCGTTGTTGTTTGCAGTGGACACTATACAGAACCAAACGTTGCTCA 612
|||||||| ||||||||| || ||||||| |||||| ||||| ||||||||| || ||||
Sbjct 477 TGAGATCTATGACGCCGTCGTGGTTTGCAATGGACATTATACTGAACCAAACATTACTCA 536
Query 613 TATTCCTGGTATAAAATCGTGGCCAGGAAAGCAGATCCATAGCCACAACTACAGAGTTCC 672
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TATTCCTGGTATTAAATCGTGGCCAGGAAAGCAGATCCATAGCCACAACTACAGAGTTCC 596
Query 673 TGGGCCATTCGAAAACGAGGTGGTGGTGGTCATCGGAAATTTTGCTAGCGGTGCCGATAT 732
|| ||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||
Sbjct 597 TGATCCATTCGAAAACGAGGTAGTGGTGGTGATTGGAAATTTTGCAAGCGGTGCCGATAT 656
Query 733 TAGTAGGGACATAGCTAAGGTCGCGAAAGAAGTTCACATTGCATCTAGAGCGAGTGAATT 792
||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||
Sbjct 657 TAGTAGGGACATAGCTAAGGTCGCGAAAGAAGTCCACATTGCGTCTAGAGCAAGGGAACC 716
Query 793 TGATACATACGAAAAGCTTCCCGTGCCTCGGAACAATCTATGGATTCATTCGGAAATAGA 852
| |||||||| ||| || |||| || | ||||||||||||||| ||||| ||||| ||
Sbjct 717 CCACACATACGAGAAGATTTCCGTTCCCCAGAACAATCTATGGATGCATTCCGAAATCGA 776
Query 853 CACGGCATATGAAGATGGGTCCATTGTTTTCAAAAACGGGAAGGTGGTATAT-GCTGATA 911
||| | |||| |||||||| |||||||||||||||||||| ||||||| | |||||||
Sbjct 777 CACAACCCATGAGGATGGGTCGATTGTTTTCAAAAACGGGAAAGTGGTAT-TCGCTGATA 835
Query 912 GCATTGTGTATTGCACTGGATATAAATATCGCTT-CACATTCCTTGAAACCAATGGCTAT 970
|||||||||||||||| || || |||||| ||| | |||| ||||||||||||||||||
Sbjct 836 GCATTGTGTATTGCACCGGGTACAAATATAACTTTC-CATTTCTTGAAACCAATGGCTAT 894
Query 971 ATGAACATTGATGAAAACCGCGTAGAACATCTATACAAGCATGTATTTCCACCTGCGCTT 1030
|| |||||||||||| ||||| |||| ||||||||||||||| |||||||| ||||||
Sbjct 895 TTGCGCATTGATGAAAAACGCGTTGAACCTCTATACAAGCATGTCTTTCCACCCGCGCTT 954
Query 1031 TCTCCTGGTCTTTCATTCGTTGGTTTACCATCGATGGGCATACAATTTGTTATGTTTGAA 1090
| || || ||||| ||||| ||| ||||| | ||||| ||| || |||||||||||||
Sbjct 955 GCCCCCGGACTTTCTTTCGTAGGTGTACCAGCAATGGGGATAGTATATGTTATGTTTGAA 1014
Query 1091 ATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCAAGG-CGGGTTACACTTCC--CAC-AGA 1146
||||||||||||||||||||||||||||||||| || || ||||||||||| ||| |||
Sbjct 1015 ATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCA-GGACGAGTTACACTTCCTTCACCAGA 1073
Query 1147 AGATAAGATGATGGAAGATATTAGTGCGTGGTATGCATCGCTTGATGCGGTAGGCATTCC 1206
| | || ||||| |||||||||| ||| |||||||| |||||||||||| |||| |||||
Sbjct 1074 A-A-AA-ATGATAGAAGATATTAATGCTTGGTATGCGTCGCTTGATGCGTTAGGTATTCC 1130
Query 1207 TAAAAGATATACACATAA-ATTGGGTAAAATTCAGAGTGAGTACCTCAATTGGGTCGCAG 1265
|| ||| |||| |||| || || || ||||||||| ||| |||||||||||||||| |
Sbjct 1131 CAAGAGACATACCCATACGATAGG-TAGAATTCAGAGGGAGCACCTCAATTGGGTCGCGG 1189
Query 1266 AAGAATGTGGTTGTCCGCTCGTTGAACATTGGAGAAATCAACAAATCGTCCGCGGATACC 1325
|||||||||||||| || ||||||| ||||||| |||| || | | | |||||||||
Sbjct 1190 AAGAATGTGGTTGTGAACTTGTTGAACGTTGGAGAGGTCAAGAAGTTGACGGCGGATACC 1249
Query 1326 AGAGACTTGTCTCACACCCAGAAACTTATCGCGATGAATGGGACGACAATGACCTTATGG 1385
||||||||| | || ||||||||||| || ||||||||||||||| |||| ||||| |
Sbjct 1250 TCAGACTTGTCGCCCATCCAGAAACTTACCGTGATGAATGGGACGACGATGAACTTATAG 1309
Query 1386 AAGAAGCTTACGAGGACTTTGCTAGGAAGAAATTAATTAGTTTCCATCCTTC 1437
||||||| ||| | || ||| |||||||||| || |||||||| |||||||
Sbjct 1310 AAGAAGCGTACAAAGATTTTTCTAGGAAGAAGTTGATTAGTTTTGATCCTTC 1361
> Ahg924738 jgi|Araly1|924738|scaffold_200299.1
Length=1426
Score = 1068 bits (578), Expect = 0.0
Identities = 1124/1385 (81%), Gaps = 48/1385 (3%)
Strand=Plus/Plus
Query 77 ATGGCACCAGCTCAAAACCCGATCAGTTCTCAACACGTGGTAGTCATCGGAGCCGGAGCA 136
||||||||||||| | || |||| |||||||||||||| || |||||||||||||||
Sbjct 21 ATGGCACCAGCTCCTAGTCCAATCAATTCTCAACACGTGGCGGTGATCGGAGCCGGAGCA 80
Query 137 GCCGGTCTCGTAGCGGCTAGGGAGCTCAGTCGTGAAGGTCACACTGTTGTCGT-ATTAGA 195
||||| | ||||| || || |||||| |||||||||||||||| || || || || ||
Sbjct 81 TCCGGTTTAGTAGCCGCCAGAGAGCTCCGTCGTGAAGGTCACACCGTCGTTGTCCTT-GA 139
Query 196 GCGGGAGAAAGAAGTAGGAGGTCTCTGGATCTATTCACC-CAAAGCCGAATCCGACCCGC 254
|| |||||| ||||||| ||||| ||| | || |||| ||| |||| |||||| ||
Sbjct 140 CCGAGAGAAACAAGTAGGTGGTCTTTGGGTTTACACACCTGAAA-CCGAGTCCGACGAGC 198
Query 255 TTA-GCCTTGACCCAACCCGTTCCATAGTCCACTCGAGCGTGTACGAGTCTCTCCGAACC 313
|| | || ||||| ||||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct 199 -TAGGTCTCGACCCGACCCGACCCATAGTTCACTCGAGCGTCTACGAGTCTCTCCGAACC 257
Query 314 AACCTCCCACGAGAATGTATGGGTTTCACGGACTTCCCTTTTGTGCCTCGTTTCGATGA- 372
|| |||||| ||||||||||||||| || ||| || || || ||||| ||| ||||||
Sbjct 258 AATCTCCCAAGAGAATGTATGGGTTACAAGGATTTTCCGTTCGTGCCACGTGGCGATGAT 317
Query 373 CGAGTCAAGAGACTCGAGACGGTATCCGAGCCACATGGAAGTTCTTGCGTACCTTCAAGA 432
| |||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 318 C-CGTCAAGAGACTCTAGAAGGTATCCGAGTCACAGGGAAGTTCTTGCGTACCTTCAAGA 376
Query 433 CTTTGCTAGAGAGTTTAACCTAGAGGAGATGGTTCGGTTCGAGATCGAGGTGGTTCGGGT 492
|||||||| |||||||||| ||||||||||| | |||||||||| |||||||||||||||
Sbjct 377 CTTTGCTACAGAGTTTAACATAGAGGAGATGATCCGGTTCGAGACCGAGGTGGTTCGGGT 436
Query 493 TGAACCGGTTAACGGGAAATGGAGGGTCTGGTCTAAAACCTCTGGCGGTGTTTCCCACGA 552
||||||||||||||| |||||||||||| |||||||||| | |||||| ||||| | ||
Sbjct 437 TGAACCGGTTAACGGTAAATGGAGGGTCCAGTCTAAAACCGCCGGCGGTTTTTCCGAAGA 496
Query 553 TGAGATCTTTGACGCCGTTGTTGTTTGCAGTGGACACTATACAGAACCAAACGTTGCTCA 612
|||||||| |||||||||||| || ||| ||||||| | | ||||||||||| | |||||
Sbjct 497 TGAGATCTATGACGCCGTTGTGGTGTGCTGTGGACATTTTGCAGAACCAAACATCGCTCA 556
Query 613 TATTCCTGGTATAAAATCGTGGCCAGGAAAGCAGA-TCCATAGCCACAACTA-CAGAGTT 670
|||||||| || | || ||||| || ||||| | || | ||||||| || | |||||
Sbjct 557 AATTCCTGGAATTGAGTCATGGCCGGGGAAGCAAACTC-ACAGCCACAGTTATC-GAGTT 614
Query 671 CCTGGGCCATTCGAAA-ACGAGGTGGTGGTGGTCATCGGAAATTTTGCTAGCGGTGCCGA 729
|||| |||||| ||| | ||||| |||||||| ||||| |||||||| || || |||||
Sbjct 615 CCTGATCCATTC-AAAGATGAGGTAGTGGTGGTGATCGGGAATTTTGCGAGTGGAGCCGA 673
Query 730 TATTAGTAGGGACATAGCTAAGGTCGCGAAAGAAGTTCACATTGCATCTAGAGCGAGTGA 789
||| ||||| |||||| |||| ||||| ||||||||||| || ||||||||||| ||| |
Sbjct 674 TATCAGTAGAGACATATCTAAAGTCGCAAAAGAAGTTCATATCGCATCTAGAGCAAGTAA 733
Query 790 ATTTGATACATACGAAAAGCTTCCCGTGCCTCGGAACAATCTATGGATTCATTCGGAAAT 849
|| || |||| |||||||| |||||| ||| |||||||||||||| || || || ||
Sbjct 734 ATCCGACACATTCGAAAAGCGTCCCGTACCTAATAACAATCTATGGATGCACTCTGAGAT 793
Query 850 AGACACGGCATATGAAGATGGGT-CCATTGTTTTCAAAAACGGGAAGGTGGTATATGCTG 908
|||||| || | || ||||| | |||||||||||||||| |||||||||||| ||||||
Sbjct 794 AGACACCGCCCACGAGGATGG-TACCATTGTTTTCAAAAATGGGAAGGTGGTACATGCTG 852
Query 909 ATAGCATTGTGTATTGCACTGGATATAAATATCGCTT-CACATTCCTTGAAACCAATGGC 967
||| |||||| |||| || || || || ||| ||| | |||| |||||||||||||
Sbjct 853 ATACCATTGTCCATTGTACAGGGTACAAGTATTACTTTC-CATTTCTTGAAACCAATGAT 911
Query 968 TATATGAACATTGATGAAAACCGCGTAGAACATCTATACAAGCATGTATTTCCACCTGCG 1027
||||||| ||||||| |||||||| |||| ||| ||||||||| | |||||||| |||
Sbjct 912 TATATGAGGGTTGATGACAACCGCGTTGAACCTCTCTACAAGCATATTTTTCCACCGGCG 971
Query 1028 CTTTCTCCTGGTCTTTCATTCGTTGGTTTACCATCGATGGG-CATACAATT-TGTTATGT 1085
||| |||| || ||||| ||| | ||||||||| | ||||| | ||||||| | | ||||
Sbjct 972 CTTGCTCCCGGACTTTCTTTCATCGGTTTACCAGCAATGGGTC-TACAATTCTAT-ATGT 1029
Query 1086 TTGAAATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCAAGG-CGGGTTACACTTCCCACA 1144
||||| |||||||||||||||| | ||||| ||||| || || ||||||||||| |
Sbjct 1030 TTGAAGTCCAAAGCAAATGGGTTTCTGCAGTTTTGTCT-GGACGAGTTACACTTCCTTCG 1088
Query 1145 GAAGAT-AAGATGATGGAAGATATTA-GTGCGTGGTATGCATCGCTTGATGCGGTAGGCA 1202
| ||| || |||||||| ||| ||| || || ||||| | | | || || |||| |
Sbjct 1089 GTAGACGAA-ATGATGGACGATCTTAAGTT-GTCGTATGAAACACAAGAAGCATTAGGTA 1146
Query 1203 TTCCTAAAAGATATACACATAAATTGGGTAAAAT-TCAGAGTGAGTACCTCAATTGGGTC 1261
|||| |||||||||||||| || ||||||||| | |||| ||||||||||| ||||| ||
Sbjct 1147 TTCCCAAAAGATATACACACAAGTTGGGTAAA-TCTCAGTGTGAGTACCTCGATTGGATC 1205
Query 1262 GCAGAAGAATGTGGTTGTCCGCTCGT-T-GAACATTGGAGAAATCAACAAAT--CGTCCG 1317
||||| ||||||| | ||| | | | | |||||||||||| ||||| || | | || |
Sbjct 1206 GCAGACCAATGTGGAT-TCC-CACATGTCGAACATTGGAGAGATCAAGAAGTAAC-TC-G 1261
Query 1318 CGGATACCAGAGACTTG-TC-TCACACCCAGAAACTTATC-GCGATGAATGGGACGACAA 1374
||| ||||||||||||| | ||| ||| |||||||| || | ||||||||||| ||| |
Sbjct 1262 CGGTTACCAGAGACTTGGTAATCA-ACC-AGAAACTT-TCCGTGATGAATGGGATGACGA 1318
Query 1375 TGACCTTATGGAAGAAGCTTACGAGGACTTTGCTAGGA-AGAAAT-TAATTAGTTTCCAT 1432
||| || ||||||||||| || || ||||| ||||| | | |||| | || ||||| |||
Sbjct 1319 TGATCTCATGGAAGAAGCGTATGAAGACTTCGCTAG-ACA-AAATCTGATCAGTTTTCAT 1376
Query 1433 CCTTC 1437
|||||
Sbjct 1377 CCTTC 1381
> Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231
Length=1413
Score = 291 bits (157), Expect = 2e-77
Identities = 799/1099 (73%), Gaps = 84/1099 (8%)
Strand=Plus/Plus
Query 111 ACGTGGTAGTCATCGGAGCCGGAGCAGCCGGTCTCGTAGCGGCTAGGGAGC-TCAGTCGT 169
|||||| || |||||||||||||| ||||| || || |||||| | |||| || |||||
Sbjct 35 ACGTGGCCGTGATCGGAGCCGGAGCTGCCGGGCTTGTGGCGGCTCGAGAGCTTC-GTCGT 93
Query 170 GAAGGTCACACTGTTGTCGTATTAGAGCGGGAGAAAGAAGTAGGAGGTCTCTGGATCTAT 229
||||| ||||| || || || ||||| ||||| |||||||||| || ||| | | |
Sbjct 94 GAAGGGCACACCGTCACCGCCTTTGAGCGTCAGAAACAAGTAGGAGGACTTTGGGT-T-T 151
Query 230 TCAC-CCAAA-GCCGAATCC-GACCCGCTTAGCCTTGACCC-AACCCGTTCCATAGTCCA 285
||| ||||| | || | || ||| | || | | | ||||| | || |||| |||||
Sbjct 152 ACACTCCAAATGTCG-AGCCAGACTCACTGAACATCGACCCGGA-TCGAACCATCGTCCA 209
Query 286 CTCGAGCGTGTACGAGTCTCTCCGAACCAACCTCCCACGAGAATGTATGGGTTTCACG-G 344
||||||| | ||| | || ||||| ||||||||||||||||| |||||||||| || | |
Sbjct 210 CTCGAGCATCTACCAATCCCTCCGCACCAACCTCCCACGAGAGTGTATGGGTTACA-GTG 268
Query 345 ACTTCCCTTTTGTG-CCTCGTTTCGATGACGAGTCAAGAGACTCGAGACGGTATCC-GAG 402
||||||| |||||| || | ||| |||||| | || ||| |||||||||| || ||
Sbjct 269 ACTTCCCGTTTGTGACC-CAACCCGACGACGAGACCAGGGACCCGAGACGGTACCCGGA- 326
Query 403 CCACATGGAAGTTCTTG-CGTACCTTCAAGACTTTGCTAGAGAGTTT-A-ACCTAGAGGA 459
|| | ||||| || || ||| || || ||||| || | ||||||| | | || | ||
Sbjct 327 TCAGAGGGAAG-TCATGAGGTATCTGCAGGACTTCGCCAAAGAGTTTGATA-TTA-ACGA 383
Query 460 GATGGTTCGGTTCGAGATC-GAGGTGGTT-CGGGTTGA----AC--CGGTTAAC-G--G- 507
|||| | || ||||||| | ||||| || || || || | ||| ||| | |
Sbjct 384 GATGATCCGATTCGAGA-CAGAGGT-TTTGCGTGTGGAGCCGGCGGCGGAGAACAGTCGT 441
Query 508 GAAATGGAG-GGTCTGGTCTAAAACCTCTGGCGGTGTTTCCCACGATGAGATCTTTGACG 566
| ||||||| | || | || | ||| ||||| ||| ||| || ||||| || |
Sbjct 442 G-AATGGAGAGTTC-AATTTAGGAGCTCAAATGGTGTCTCCGGCGAAGATATCTTCGATG 499
Query 567 CCGTTGTTGTTTGCAGTGGACACTAT-ACAGAACCAAACG--TTGCTCATATTCCTGGTA 623
| || || ||||||| ||| |||| | || || || || |||| |||||||||| |
Sbjct 500 CAGTCGTAGTTTGCAATGGTCACT-TCACTGAGCC--TCGTCTTGCCCATATTCCTGTTC 556
Query 624 TAAAATCGTGGCCAGGAAAGCAGATCCATAGCCACAACTA-CAGAGTTCCTGGGCCATTC 682
| || |||||||||||||| |||||||||||||| || | | ||||| | ||||||
Sbjct 557 TCTTGTCATGGCCAGGAAAGCAAATCCATAGCCACAATTATC-GTGTTCCAGATCCATTC 615
Query 683 GAAA-A-CGAGGTGGTGGTGGTCATCGGAAA-TTTTGCTAGCGG-TGCCGATATTAGTAG 738
||| | | | |||||| | || || ||||| | | || || | |||||||| ||
Sbjct 616 -AAAGATC-AAGTGGTGATAGTGATAGGAAACCAAT-CCAGTGGAAG-TGATATTAGCAG 671
Query 739 GGACATAGCTAA-GGTCGCGAAAGAAGTTCACATTGCATCTAGAGC-GAGTGAATTTGAT 796
||||||||| || | || |||||||| || |||||| ||| | | || || || ||
Sbjct 672 GGACATAGC-AACCTTGGCAAAAGAAGTCCATATTGCAGCTAAATCTGA-TGCATACGA- 728
Query 797 ACATACGAAAAGCTTCCCGTGCCTCGGAACAATCTATGGATTCATTCGGA-AATAGACAC 855
| | | | |||| || || | | | ||||||| ||||| || || || ||| |
Sbjct 729 A-A-A-GGAAAG-TT-CCAT---TTATAGCAATCTACATATTCA-TCCGACGATTGAC-C 778
Query 856 G-GCATATGAAGATGGGTCCATTGTTTTCAAAAACGGGAAGGTGGTATATGCTGATAG-C 913
| | |||| ||||| || |||||||| || ||||||| ||||||| ||| ||| | |
Sbjct 779 GCGTGTATGCGGATGGTTCGGTTGTTTTCCAAGACGGGAAAGTGGTATTTGCGGAT-GCC 837
Query 914 ATTGTGTATTGCACTGGATATAAATATCGCTTCACATTCCTTGAAACCAATGGCTATATG 973
|| || ||||||| || || || ||| ||||| |||| |||||||| ||||| ||| ||
Sbjct 838 ATAGTACATTGCACCGGCTACAAGTATTGCTTCCCATTTCTTGAAACTAATGGTTATGTG 897
Query 974 AACATTGATGAAAACCGCG-TAGAACATCTATACAAGCATGTATTTCCACCTGCGCTTTC 1032
| | |||| || ||||| | | || ||| ||||||||||||| ||||| || |||||| |
Sbjct 898 ACCGTTGAAGATAACCGTGTTGGACCAT-TATACAAGCATGTCTTTCCGCCAGCGCTTGC 956
Query 1033 TCCTGGTCTTTCATTCGTTGGTTTACCATCGATGGGC-ATACAATT-TGTTATGTTTGAA 1090
||||| || || || | |||||||| || || ||| | ||||| | |||||||||||
Sbjct 957 CCCTGGCCTCTCCTTTATCGGTTTACCTTCAAT-GGCGTTGCAATTCT-TTATGTTTGAA 1014
Query 1091 ATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCAAGG-CGGGTTACA-CTTCCCACAGAAG 1148
||||||||||||||||| || | || || || || || |||| | ||||| | || |
Sbjct 1015 ATCCAAAGCAAATGGGTCGCTTCGGTTTTATCG-GGTCGTGTTA-AGCTTCCGTCGGAGG 1072
Query 1149 ATAAGATGATGGAAGATAT 1167
| || ||||||||||||||
Sbjct 1073 ACAAAATGATGGAAGATAT 1091
> Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1
Length=1482
Score = 228 bits (123), Expect = 1e-58
Identities = 793/1102 (72%), Gaps = 103/1102 (9%)
Strand=Plus/Plus
Query 110 CACGTGGTAGTCATCGGAGC-CGGAGCAGCCGGTCTCGTAGCGGCTAGGGAGC-TCAGTC 167
||||||| || |||||| | |||||| ||||| ||||| |||| | | |||| || |||
Sbjct 33 CACGTGGCCGTGATCGGA-CTCGGAGCCGCCGGGCTCGTGGCGGTTCGAGAGCTTC-GTC 90
Query 168 GTGAAGGTCACACTGTTGTC-GTATTAGAGCGGGAGAAAGAAGTAGGAGGTCTCTGGATC 226
||||||||||||| || || || || ||||| |||||| | || || || |||||| |
Sbjct 91 GTGAAGGTCACACCGTCATCGGT-TTCGAGCGTGAGAAACATGTTGGTGGACTCTGGGT- 148
Query 227 TATTCACCCA--AAGCCGAATCC-GACCCGCTTAGCCTTGACCC-AACCCGTTCCATAGT 282
| | ||| | || |||| || ||| | |||||| ||||||| | || |||| ||
Sbjct 149 T-TACACTGATCGAGTCGAA-CCAGACTCACTTAGCGTTGACCCGGA-TCGAACCATCGT 205
Query 283 CCACTCGAGCGTGTACGAGTCTCTCCGAACCAACCTCCCACGAGAATGTATGGGTTTCAC 342
||||||||||| ||| | || ||||| || || || |||||||| |||||||||| ||
Sbjct 206 ACACTCGAGCGTCTACCAATCCCTCCGCACAAATCTACCACGAGAGTGTATGGGTTACA- 264
Query 343 G-GAC-TTCCCTTTTGT-GCCTCGTTTCGATGACGAGTCAAGAGACTCGAGACGGTATCC 399
| ||| ||||| || || || || | || ||| | | | ||| |||||||||| ||
Sbjct 265 GTGACTTTCCC-TTCGTAACC-CGATCCGGTGA-G-G----GCGACCCGAGACGGTACCC 316
Query 400 -GAGCCACATGGAAGTTCTTG-CGTACCTTCAAGACTTT-GCTAGAGAGTTTAACCTAGA 456
|| || | ||||| ||||| |||||||||||| ||| || | |||||| || | ||
Sbjct 317 GGA-TCATAGGGAAG-TCTTGATGTACCTTCAAGA-TTTCGCCAAAGAGTTCAAGATCGA 373
Query 457 GGAGATGGTTCGGTTCGAGATC-GAGG---TG-GT-TCGG-GTTGA-ACC-G-G-TTAAC 505
|| ||| | || ||||| | | |||| || || | || | || || | | ||||
Sbjct 374 AGAAATGATCCGATTCGATA-CAGAGGTTTTGTGTGT-GGAGCCGACGCCGGAGAATAAC 431
Query 506 GGGAAATGGAG-GGTCTGGTCTAAAACCTCTGGCGGTGTTTCCCACGATGAGATCTTTGA 564
| || ||||| | || | ||||| ||| | ||||| ||| ||| || ||||||||
Sbjct 432 CGTAATTGGAGTGTTC-AATTTAAAAGCTCAAGTGGTGTCTCCGGCGAAGAAATCTTTGA 490
Query 565 CGCCGTTGTTGTTTGCAGTGGACACTAT-ACAGAACCAAACG--TTGCTCATATTCCTGG 621
||| || || ||||| | ||| |||| | || || || || ||||||| ||||||||
Sbjct 491 CGCTGTCGTAGTTTGTAATGGTCACT-TCACTGAGCC--TCGTCTTGCTCACATTCCTGG 547
Query 622 TATAAAATCGTGGCCAGGAAAGCAGATCCATAGCCACAACTA-CAGAGTTCCTGGGCCAT 680
||| | || ||||||||||||||||||||||||||||| || | || |||| | ||
Sbjct 548 GATAGAGTCATGGCCAGGAAAGCAGATCCATAGCCACAATTATCGGA-TTCCAGATTTAT 606
Query 681 TCGAAA-A-CGAGGTGGTGGTGGTCATCGGAAATTTTGCTAGCGGTGCCGATATTAGTAG 738
|| ||| | | |||||||| | || || |||| | || || || ||| |||||||
Sbjct 607 TC-AAAGATC-AGGTGGTGATAGTTATAGGAAGTCAAGCCAGTGGAAACGACATTAGTAA 664
Query 739 GGACATAGCTAAGG-TCGCGAAAGAAGTTCACAT-TGCATCTAGAGCGAGT-GAATTTGA 795
|||||||| || | || ||||||||||| || | | |||| |||| || | || ||
Sbjct 665 AGACATAGC-AACCATTGCAAAAGAAGTTCATATCT-CGTCTAAAGCG-GTTGCATCCGA 721
Query 796 TACATACGAAAAGCTTCCCGTGCCTCGGAACAATCTATGGATTCATTCGGAA-ATAGACA 854
| |||||| ||| || | | | ||| ||| ||||||| | | ||| ||
Sbjct 722 TTCATACG----GCT----GTTAC--G-A-CAACCTACGGATTCACCCT-ACGATATAC- 767
Query 855 CG-GCATATGAAGATGGGTCCATTGTTTTCAAAAACGGGAAGGTGGTATATGCTGATAGC 913
|| || || ||||| ||| | || ||| ||||||||| ||||| | ||||||| ||
Sbjct 768 CGCGCCCGCGAGGATGGTTCCGTGGTATTCCGAAACGGGAAAGTGGTTTTTGCTGAT-GC 826
Query 914 -ATTGTGT-ATTGCACTGGATATAAATATCGCTTCACATTCCTTGAAACCAATGGCTATA 971
|| || | ||||||| || || || |||| ||| | || ||| ||| ||| || ||
Sbjct 827 TATAGT-TCATTGCACCGGTTACAAGTATCATTTCCCGTTTCTTAAAAACAACGGTTACG 885
Query 972 TGAACAT-T-GATGAAAACCGCGTAGAACATCTATACAAGCATGTATTTCC-ACCTGCGC 1028
| | | | | || || ||||| || | || || ||||||||||| ||||| ||| ||
Sbjct 886 TTA-C-TGTAGAAGATAACCGTGTTGGACCGCTCTACAAGCATGT-TTTCCCACCCGCA- 941
Query 1029 TTT-CTCCTGGTCTTTCATTCGTTGGTTTACCAT-CGATGGG-CATACAATT-TGTTATG 1084
||| | ||||| | || || |||||||||| | | ||||| | | || || | |||||
Sbjct 942 TTTGCGCCTGGGATCTCCTTTATTGGTTTACCTTTC-ATGGGGCTT-CAGTTCT-TTATG 998
Query 1085 TTTGAAATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCAAGG-CGGGTTACA-CTTCCCA 1142
|||||||| || ||||| ||||| || | || ||||| || ||||||| | |||||||
Sbjct 999 TTTGAAATACAGAGCAAGTGGGTTGCTTCGGTTTTGTCG-GGTCGGGTTA-AGCTTCCCA 1056
Query 1143 CAGAAGATAAGATGATGGAAGA 1164
|||| |||||||||||||||||
Sbjct 1057 CAGAGGATAAGATGATGGAAGA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5