BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62570.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924738 jgi|Araly1|924738|scaffold_200299.1 2272 0.0
Ahg315143 jgi|Araly1|315143|fgenesh1_pm.C_scaffold_2000176 1042 0.0
Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1 278 1e-73
> Ahg924738 jgi|Araly1|924738|scaffold_200299.1
Length=1426
Score = 2272 bits (1230), Expect = 0.0
Identities = 1361/1426 (95%), Gaps = 2/1426 (0%)
Strand=Plus/Plus
Query 52 AGCATTCAAAACTTTGAAAAATGGCACCAGCTCCTAGTCCAATCAATTCTCAACACGTGG 111
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCATTGAAAATTTTGAGAAATGGCACCAGCTCCTAGTCCAATCAATTCTCAACACGTGG 60
Query 112 CGGTGATCGGAGCCGGAGCAGCCGGTTTAGTAGCAGCCAGAGAGCTTCGTCGTGAAGGTC 171
|||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 61 CGGTGATCGGAGCCGGAGCATCCGGTTTAGTAGCCGCCAGAGAGCTCCGTCGTGAAGGTC 120
Query 172 ACACCGTCGTTGTCCTTGACCGAGAGAAACAAGTAGGTGGTCTTTGGGTTTACACACCTG 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACACCGTCGTTGTCCTTGACCGAGAGAAACAAGTAGGTGGTCTTTGGGTTTACACACCTG 180
Query 232 AAACCGAGTCCGACGAGCTTGGTCTTGACCCGACCCGACCCATAGTCCACTCGAGCGTCT 291
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 181 AAACCGAGTCCGACGAGCTAGGTCTCGACCCGACCCGACCCATAGTTCACTCGAGCGTCT 240
Query 292 ACAAGTCTCTCCGAACCAATCTCCCTAGAGAATGTATGGGTTACAAGGATTTCCCTTTCG 351
|| |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 241 ACGAGTCTCTCCGAACCAATCTCCCAAGAGAATGTATGGGTTACAAGGATTTTCCGTTCG 300
Query 352 TGCCACGTGGCGATGATCCGTCAAGAGACTCTAGAAGGTATCCGAGTCACAGGGAAGTTC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGCCACGTGGCGATGATCCGTCAAGAGACTCTAGAAGGTATCCGAGTCACAGGGAAGTTC 360
Query 412 TTGCGTACCTTCAAGACTTTGCTACAGAGTTTAACATAGAGGAGATGATCCGGTTCGAGA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGCGTACCTTCAAGACTTTGCTACAGAGTTTAACATAGAGGAGATGATCCGGTTCGAGA 420
Query 472 CTGAGGTTCTTCGTGTTGAACCGGTTAATGGTAAATGGAGGGTCCAGTCTAAAACCGGCG 531
| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 421 CCGAGGTGGTTCGGGTTGAACCGGTTAACGGTAAATGGAGGGTCCAGTCTAAAACCGCCG 480
Query 532 GCGGTTTTTCC-AACGATGAGATCTATGACGCCGTTGTAATGTGTTGTGGACATTTCGCA 590
||||||||||| || ||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 481 GCGGTTTTTCCGAA-GATGAGATCTATGACGCCGTTGTGGTGTGCTGTGGACATTTTGCA 539
Query 591 GAACCAAACATCGCTCAAATTCCTGGAATTGAGTCATGGCCGGGGAGGCAAACACACAGC 650
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 540 GAACCAAACATCGCTCAAATTCCTGGAATTGAGTCATGGCCGGGGAAGCAAACTCACAGC 599
Query 651 CACAGTTATCGAGTTCCTGATCCATTCAAAGATGAGGTGGTGGTAGTAATCGGGAATTTT 710
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 600 CACAGTTATCGAGTTCCTGATCCATTCAAAGATGAGGTAGTGGTGGTGATCGGGAATTTT 659
Query 711 GCGAGTGGAGCCGATATCAGTAGAGACATATCTAAAGTCGCAAAAGAAGTTCATATCGCA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCGAGTGGAGCCGATATCAGTAGAGACATATCTAAAGTCGCAAAAGAAGTTCATATCGCA 719
Query 771 TCTAGAGCAAGTAAATCCAACACTTTCGAAAAACGTCCTGTACCTAATAACAATCTCTGG 830
|||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 720 TCTAGAGCAAGTAAATCCGACACATTCGAAAAGCGTCCCGTACCTAATAACAATCTATGG 779
Query 831 ATGCACTCTGAGATAGACACCGCCCACGAGGATGGTACCATTGTTTTTAAAAATGGGAAG 890
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 ATGCACTCTGAGATAGACACCGCCCACGAGGATGGTACCATTGTTTTCAAAAATGGGAAG 839
Query 891 GTGGTACATGCTGATACCATTGTCCATTGTACCGGGTACAAGTATTACTTTCCATTTCTT 950
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 GTGGTACATGCTGATACCATTGTCCATTGTACAGGGTACAAGTATTACTTTCCATTTCTT 899
Query 951 GAGACCAATAATTATATGAGAGTTGATGACAATCGCGTTGAACCTCTCTACAAGCATATT 1010
|| |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 900 GAAACCAATGATTATATGAGGGTTGATGACAACCGCGTTGAACCTCTCTACAAGCATATT 959
Query 1011 TTTCCACCTGCGCTAGCTCCCGGACTTTCTTTCATTGGTTTACCTGCAATGGGTCTACAA 1070
|||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 960 TTTCCACCGGCGCTTGCTCCCGGACTTTCTTTCATCGGTTTACCAGCAATGGGTCTACAA 1019
Query 1071 TTCTATATGTTTGAAGTCCAAAGCAAATGGGTTGCTGCAGTCTTGTCTGGACGAGTTACA 1130
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1020 TTCTATATGTTTGAAGTCCAAAGCAAATGGGTTTCTGCAGTTTTGTCTGGACGAGTTACA 1079
Query 1131 CTTCCTTCGGTAGATGAAATGATGGACGATCTTAAGTTGTCGTATGAAACACAAGAAGCG 1190
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTTCCTTCGGTAGACGAAATGATGGACGATCTTAAGTTGTCGTATGAAACACAAGAAGCA 1139
Query 1191 TTAGGTATTCCCAAAAGATATACACATAAGTTGGGTAAATCTCAGTGTGAGTACCTCGAT 1250
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 TTAGGTATTCCCAAAAGATATACACACAAGTTGGGTAAATCTCAGTGTGAGTACCTCGAT 1199
Query 1251 TGGATCGCAGACCTGTGTGGATTCCCACATGTTGAACATTGGAGAGATCAAGAAGTAACT 1310
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 TGGATCGCAGACCAATGTGGATTCCCACATGTCGAACATTGGAGAGATCAAGAAGTAACT 1259
Query 1311 CGCGGTTACCAGAGACTTGGTAATCAACCAGAAACTTTCCGTGATGAATGGGATGATGAT 1370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1260 CGCGGTTACCAGAGACTTGGTAATCAACCAGAAACTTTCCGTGATGAATGGGATGACGAT 1319
Query 1371 GATCTCATGGAAGAAGCATACGAAGATTTTGCTAGACTAAATCTGATCAATTTTCATCCT 1430
||||||||||||||||| || ||||| || ||||||| ||||||||||| ||||||||||
Sbjct 1320 GATCTCATGGAAGAAGCGTATGAAGACTTCGCTAGACAAAATCTGATCAGTTTTCATCCT 1379
Query 1431 TCTCGTTTTCTCGAATCCGGAAGATGAAGTTTGACTACGATTGTAA 1476
||||||||||| |||||||||||||||| | |||||| | ||||||
Sbjct 1380 TCTCGTTTTCTTGAATCCGGAAGATGAAATATGACTATGCTTGTAA 1425
> Ahg315143 jgi|Araly1|315143|fgenesh1_pm.C_scaffold_2000176
Length=1386
Score = 1042 bits (564), Expect = 0.0
Identities = 1123/1387 (81%), Gaps = 62/1387 (4%)
Strand=Plus/Plus
Query 90 CCAATCAATTCTCAACACGTGGCGGTGATCGGAGCCGGAGCAGCCGGT-TTAGTAGCAGC 148
|||||||| |||||||| ||||||||||| |||||||||||||||||| | | || ||||
Sbjct 19 CCAATCAACTCTCAACATGTGGCGGTGATTGGAGCCGGAGCAGCCGGTCTCA-TAACAGC 77
Query 149 CAGAGAGCTTCGTCGTGAAGGTCACACCGTCGTTGTCCTTGACCGAGAGAAACAAGTAGG 208
|||||||| | |||||||||||||||||| || ||| |||| || |||||| |||| ||
Sbjct 78 TAGAGAGCTCCTTCGTGAAGGTCACACCGTTGTCGTCTTTGAACGGGAGAAAGAAGTGGG 137
Query 209 TGGTCTTTGGGTTTACACACCTGAAACCGAGTCCGACGAGCTTGGTCTTGACCCGACCCG 268
||||||||| | || ||||| ||||||| |||||| |||| | || || |||| |||
Sbjct 138 AGGTCTTTGGATCTATTCACCTAAAACCGAATCCGACCCGCTTAGCCTCGATCCGAACCG 197
Query 269 ACCCATAGTCCACTCGAGCGTCTACAAGTCTCTCCGAACCAATCTCCCTAGAGAATGTAT 328
| ||||||||| |||||||||||| ||||||||||||||||| |||| |||||| | ||
Sbjct 198 ATACATAGTCCATTCGAGCGTCTACGAGTCTCTCCGAACCAATGTCCCGAGAGAAAGCAT 257
Query 329 GGGT-TACAAGGA-TTTCCCTTTCGTGCCACGTGGCGATGAT-CCGTCAAGAGACTCTAG 385
|||| | || ||| ||||||||| |||||||| |||||| | ||||||||| | ||
Sbjct 258 GGGTGT-CAGGGACTTTCCCTTT-TTGCCACGTTTTGATGATGTC-TCAAGAGACCCGAG 314
Query 386 AAGGTATCCGAGTCACAGGGAAGTTCTTGCGTACCTTCAAGACTTTGCTACAGAGTTTAA 445
| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 315 ACGGTACCCGAGTCACAGAGAAGTTCTTGCGTACCTTCAAGACTTTGCTAGAGAGTTTAA 374
Query 446 CATAGAGGAGATGATCCGGTTCGAGACTGAGGTTC-TTCGTGTTGAACCGGTTAATGGTA 504
|||||||| ||| ||||||||||||| ||||| | |||| |||||||||||| | || |
Sbjct 375 AATAGAGGACATGGTCCGGTTCGAGACCGAGGT-CGTTCGAGTTGAACCGGTTGACGGGA 433
Query 505 AATGGAGGGTCCAGTCT-A-AAACCGGCGGCGGTTTTTCCAACGATGAGATCTATGACGC 562
|||||||||||| ||| | ||| ||| | | || ||||||||||||||||| ||||||
Sbjct 434 AATGGAGGGTCCGGTCCGAGAAATCGG-GA-GATTGTTCCAACGATGAGATCTTTGACGC 491
Query 563 CGTTGTAATGTGTTGTGGACATT-TCGCAGAACCAAACATCGCT-CAAATTCCTGGAATT 620
|||||| | || ||||||||| | ||||||||||| ||| | || |||||||| ||
Sbjct 492 CGTTGTGGTTTGCAGTGGACATTATA-CAGAACCAAACGTCG-TGCATATTCCTGGTATA 549
Query 621 GAGTCATGGCCGGGGAGGCAAA-CACACAGCCACAGTTATC-GAGTTCCTGATCCATTC- 677
| || ||||| || | ||| | | || ||||||| || | ||||||||| |||||||
Sbjct 550 AATTCGTGGCCAGGAAAGCAGATC-CATAGCCACAACTA-CAGAGTTCCTGGTCCATTCG 607
Query 678 AAAGATGAGGTGGTGGTAGTAATCGGGAATTTTGCGAGTGGAGCCGATATCAGTAGAGAC 737
||| | |||||||||||||| ||||| |||||||| || || || ||||| ||||| |||
Sbjct 608 AAA-ACGAGGTGGTGGTAGTGATCGGAAATTTTGCAAGCGGTGCTGATATTAGTAGGGAC 666
Query 738 ATATCTAAAGTCGCAAAAGAAGTTCATATCGCATCTAGAGCAAGTAAATCCAACACTTTC 797
||| || | ||||| |||||||||||||| || |||||||| ||| |||| | || | |
Sbjct 667 ATAGCTCAGGTCGCGAAAGAAGTTCATATTGCGTCTAGAGCGAGTGAATCTGATACATAC 726
Query 798 GAAAAA-CGTCCTGTACCTAATAACAATCTCTGGATGCACTCTGAGATAGACACCGCCCA 856
||||| | |||||| ||| ||||||| || ||||| || || |||||||||||||||||
Sbjct 727 -AAAAAGCTTCCTGTGCCTCATAACAACCTATGGATTCATTCCGAGATAGACACCGCCCA 785
Query 857 CGAGGATGG-TACCATTGTTTTTAAAAATGGGAAGGTGGTACATGCTGATACCATTGTCC 915
|| ||||| | | |||||||||||||| |||||||||||| |||| |||| ||||||
Sbjct 786 TGAAGATGGGT-CAATTGTTTTTAAAAACGGGAAGGTGGTATATGCAGATAGCATTGTAT 844
Query 916 ATTGTACCGGGTACAAGTATTACTTTCCATTTCTTGAGACCAATAATTATATGAG-AGTT 974
|||| || || ||||||||| |||| ||||||||||| |||||| |||||||| | ||
Sbjct 845 ATTGCACTGGATACAAGTATCACTTCCCATTTCTTGAAACCAATGGCTATATGAGCA-TT 903
Query 975 GATGACAATCGCGTTGAACCTCTCTACAAGCATATTTTTCCACCTGCGCTAGCTCCC-GG 1033
||||| || ||| |||| ||||| ||||||||| |||||||||| ||||| || ||| ||
Sbjct 904 GATGAAAACCGCATTGATCCTCTATACAAGCATGTTTTTCCACCCGCGCTTGC-CCCTGG 962
Query 1034 ACTTTCTTTCATTGGTTTACCTGCAATGGGTC-TACAATTCTAT-ATGTTTGAAGTCCAA 1091
|||||||||||||||||||| || ||||| | |||| || | | ||||||||| |||||
Sbjct 963 TCTTTCTTTCATTGGTTTACCAGCGATGGG-CATACAGTT-TGTTATGTTTGAAATCCAA 1020
Query 1092 AGCAAATGGGTTGCTGCAGTCTTGTCTGGACGAGTTACACTTCCTTCGGTAGATGAA-AT 1150
||||||||||| || ||||||||| | ||||| |||| |||||| || |||| || ||
Sbjct 1021 AGCAAATGGGTGGCAGCAGTCTTGGCAGGACGGGTTAAACTTCCCTCACAAGAT-AAGAT 1079
Query 1151 GATGGACGATC-TTAAGTT-GTCGTATGAAACACAAGAAGCGTTAGGTATTCCCAAAAGA 1208
||| || || | |||| || || ||||| | | | | ||||||||| |||||||||||
Sbjct 1080 GATAGAAGA-CATTAA-TTCGTGGTATGCATCGCTTCATGCGTTAGGTCTTCCCAAAAGA 1137
Query 1209 TATACACATAAGTTGGGTAAA-TCTCAGTGTGAGTACCTCGA-TTGGATCGCAGACCTGT 1266
||||||||||| ||||||||| | ||||| ||||||||| || ||||||||| || |
Sbjct 1138 TATACACATAAATTGGGTAAAAT-TCAGTCTGAGTACCT-GAATTGGATCGCGGAAGAAT 1195
Query 1267 GTGGAT-TCC-CACATGTTGAACATTGGAGAGATCAAGAAGTAACTC-GCGGTTACCAGA 1323
|||||| ||| | | ||||||||||||||| ||||| || | || |||| ||| |||
Sbjct 1196 GTGGATGTCCGCTC--GTTGAACATTGGAGAAATCAACAAATCG-TCCGCGGATACGAGA 1252
Query 1324 GACTTGGTAATC--AACCAGAAACTT-TCCGTGATGAATGGGATGATGATGATCTCATGG 1380
|||||| | || |||||||||||| || | ||||||||||| || ||||||| ||||
Sbjct 1253 GACTTG-TC-TCCCAACCAGAAACTTATC-GCGATGAATGGGACGACAATGATCTTATGG 1309
Query 1381 AAGAAGCATACGAAG-ATTTTGCTAG-ACTAAATCTGATCAATTTTCATCCTTCTCGTTT 1438
||||||| ||| ||| | |||| ||| | ||| | | || | || ||||||||| | |||
Sbjct 1310 AAGAAGCTTAC-AAGGAATTTGGTAGGAATAAGT-TAATTAGTTCTCATCCTTCCCATTT 1367
Query 1439 TCTCGAA 1445
|| |||
Sbjct 1368 CCTTGAA 1374
> Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1
Length=1482
Score = 278 bits (150), Expect = 1e-73
Identities = 785/1077 (73%), Gaps = 101/1077 (9%)
Strand=Plus/Plus
Query 105 CACGTGGCGGTGATCGGAGC-CGGAGCAGCCGGTTTAGTAGCAG-CCAGAGAGCTTCGTC 162
|||||||| ||||||||| | |||||| ||||| | || || | | ||||||||||||
Sbjct 33 CACGTGGCCGTGATCGGA-CTCGGAGCCGCCGGGCTCGTGGCGGTTC-GAGAGCTTCGTC 90
Query 163 GTGAAGGTCACACCGTCGTTG-TCCTT-GACCGAGAGAAACAAGTAGGTGGTCTTTGGGT 220
||||||||||||||||| | | | || || || |||||||| || ||||| || |||||
Sbjct 91 GTGAAGGTCACACCGTCATCGGT--TTCGAGCGTGAGAAACATGTTGGTGGACTCTGGGT 148
Query 221 TTACAC--ACCTGAAACCGAGTCC-GACG-AGCTTGGTC-TTGACCCG-ACCCGACCCAT 274
|||||| | | || | || || ||| | ||| | | |||||||| | | || ||||
Sbjct 149 TTACACTGATC-GAGTC-GAA-CCAGACTCA-CTTAG-CGTTGACCCGGATC-GAACCAT 202
Query 275 AGTCCACTCGAGCGTCTAC-AAGTCTCTCCGAACCAATCTCCCTA-GAGAATGTATGGGT 332
|| ||||||||||||||| || || ||||| || ||||| || | |||| |||||||||
Sbjct 203 CGTACACTCGAGCGTCTACCAA-TCCCTCCGCACAAATCTACC-ACGAGAGTGTATGGGT 260
Query 333 TACAAG-GA-TTTCCCTTTCGTG-CCACG-TGGCGATGATCCGTCAAGAGACTCTAGAAG 388
|||| | || |||||||| ||| || || | || ||| | | || | | ||| |
Sbjct 261 TACA-GTGACTTTCCCTT-CGTAACC-CGATC-CGGTGAGG-G-C--GAC-C-CGAGACG 310
Query 389 GTATCCG-AGTCACAGGGAAGTTCTTGC-GTACCTTCAAGACTTT-GCTACAGAGTTTAA 445
||| ||| | ||| |||||||| |||| |||||||||||| ||| || | |||||| ||
Sbjct 311 GTACCCGGA-TCATAGGGAAGT-CTTGATGTACCTTCAAGA-TTTCGCCAAAGAGTTCAA 367
Query 446 CATAGAGGAGATGATCCGGTTCGAGACTGAGGTTCTTCGTGT-TG-A----AC-C-GGTT 497
|| || || |||||||| ||||| || |||||| || |||| || | || | ||
Sbjct 368 GATCGAAGAAATGATCCGATTCGATACAGAGGTT-TT-GTGTGTGGAGCCGACGCCGGAG 425
Query 498 AATG---GTAAATGGAGGGTCCAGTCTAAAACCGGCG-GCGGTTTTTCCAACGATGAGAT 553
||| |||| ||||| || || | ||||| | | | ||| | ||| ||| || ||
Sbjct 426 AATAACCGTAATTGGAGTGTTCAATTTAAAAGCT-CAAGTGGTGTCTCCGGCGAAGAAAT 484
Query 554 CTATGACGCCGTTGTAATGTGTTGTGGACATTTCGCAGAACCAAA-CATCGCTCAAATTC 612
|| |||||| || ||| | ||| ||| || ||| | || || | | ||||| ||||
Sbjct 485 CTTTGACGCTGTCGTAGTTTGTAATGGTCACTTCACTGAGCCTCGTCTT-GCTCACATTC 543
Query 613 CTGGAATTGAGTCATGGCCGGGGAGGCAAA-CACACAGCCACAGTTATCG-AGTTCCTGA 670
|||| || ||||||||||| || | ||| | | || ||||||| |||||| | |||| ||
Sbjct 544 CTGGGATAGAGTCATGGCCAGGAAAGCAGATC-CATAGCCACAATTATCGGA-TTCCAGA 601
Query 671 TCCATTCAAAGATGAGGTGGTGGTAGTAATCGGGAATTTT-GCGAGTGGAGCCGATATCA 729
| |||||||||| |||||||| |||| || || || | || |||||| ||| || |
Sbjct 602 TTTATTCAAAGATCAGGTGGTGATAGTTATAGG-AAGTCAAGCCAGTGGAAACGACATTA 660
Query 730 GTAGAGACATATCTAA--AGTCGCAAAAGAAGTTCATATCGCATCTAGAGCAAGTAA-AT 786
||| ||||||| | || | | |||||||||||||||||| | |||| ||| || ||
Sbjct 661 GTAAAGACATAGC-AACCATT-GCAAAAGAAGTTCATATCTCGTCTAAAGCG-GTTGCAT 717
Query 787 CCAACACTTTCGAAAAACGTCCTGTACCTAATAACAATCT-CTGGATGCACTCTGA-GAT 844
|| | || | | | || | ||| || | ||| || | |||| ||| || | |||
Sbjct 718 CCGA---TT-C-ATA--CGGC-TGT---TACGA-CAACCTAC-GGATTCACCCT-ACGAT 763
Query 845 AGACAC-CGCCCACGAGGATGGTACCATTGTTTTTAAAAATGGGAAGGTGGTACATGCTG 903
| || | ||||| |||||||||| || | || || ||| ||||| ||||| |||||
Sbjct 764 ATAC-CGCGCCCGCGAGGATGGTTCCGTGGTATTCCGAAACGGGAAAGTGGTTTTTGCTG 822
Query 904 ATACCATTGTCCATTGTACCGGGTACAAGTATTACTTTCCA-TTTCTTGAGACCAATAAT 962
|| | || || ||||| ||||| ||||||||| | ||||| |||||| | | ||| |
Sbjct 823 ATGCTATAGTTCATTGCACCGGTTACAAGTATCA-TTTCCCGTTTCTTAAAAACAACGGT 881
Query 963 TATATGAGAGTTGATGACAATCGCGTTGAACCTCTCTACAAGCATATTTTTCCACCTGCG 1022
|| | | || || || || || |||| ||| |||||||||||| |||| ||||| ||
Sbjct 882 TACGTTACTGTAGAAGATAACCGTGTTGGACCGCTCTACAAGCATGTTTTCCCACCCGCA 941
Query 1023 CTAGCTCCCGG-ACTTTC-TTTCATTGGTTTACCTG-CAATGGGTCTACAATTCTATATG 1079
| || || || | | || ||| |||||||||||| || |||| || || |||| ||||
Sbjct 942 TTTGCGCCTGGGA-TCTCCTTT-ATTGGTTTACCTTTCA-TGGGGCTTCAGTTCTTTATG 998
Query 1080 TTTGAAGTCCAAAGCAAATGGGTTGCTGCAGTCTTGTCTGGACGAGTTACA-CTTCC 1135
|||||| | || ||||| ||||||||| | || ||||| || || |||| | |||||
Sbjct 999 TTTGAAATACAGAGCAAGTGGGTTGCTTCGGTTTTGTCGGGTCGGGTTA-AGCTTCC 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5