BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62610.4
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907180 jgi|Araly1|907180|Al_scaffold_0002_261 1086 0.0
Ahg485952 jgi|Araly1|485952|fgenesh2_kg.5__1944__AT3G55290.1 913 0.0
Ahg480684 jgi|Araly1|480684|fgenesh2_kg.3__3385__AT2G17845.1 459 2e-128
> Ahg907180 jgi|Araly1|907180|Al_scaffold_0002_261
Length=873
Score = 1086 bits (588), Expect = 0.0
Identities = 754/835 (90%), Gaps = 8/835 (1%)
Strand=Plus/Plus
Query 47 AAGCAGGTATTGAAGCAATTGGAGCCATGGTGTGAACTTAAAGATAAAGTGGTTCTTGTG 106
|||||||| |||| ||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 43 AAGCAGGTGTTGAGGCAATTGGAGCCATGGTGTGAGCTTAATGGTAAAGTGGTTCTTGTG 102
Query 107 ACAGGTGCTTCATCTGGTATAGGGAGAGAGATCTGTCTTGATCTAT-GCAAAGCTGGTTG 165
||||| ||||| |||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 103 ACAGGAGCTTCCTCTGGTATAGGGAGAGAGATCTGTATTGATCT-TGGCAAAGCTGGTTG 161
Query 166 TAAGATTGTAGCAGCAGCTCGTCGTGTTGATCGTCTCAACTCTCTCTGTTCTGAAATCAA 225
||||||| | ||||| ||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 162 TAAGATTATTGCAGCGGCTCGTCGTGTTGATCGTCTCGATTCTCTCTGTTTTGAAATCAA 221
Query 226 CAGCTTTGGTGCAATC-GGAGTCCAAGCCGCAGCTCTTGAGCTAGACGTTTCATCAGACG 284
|||||||||| || | ||| | |||||||||||||||||| |||| |||||||||||||
Sbjct 222 CAGCTTTGGTTTAA-CTGGAATTCAAGCCGCAGCTCTTGAGTTAGATGTTTCATCAGACG 280
Query 285 CAGACACTATTCGAAAAGCGGTTAAAGAAGCTTGGGAAATCTTTGGAACGATCGATGTTT 344
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 281 CAGACACTATTCGAAAAGTGGTTAAAGAAGCTTGGGAAATCTTTGGAAAGATAGATGTTT 340
Query 345 TGATTAACAATGCTGGAATCAGAGGCAATGTCAAGTCTAGTTTGGATTTATCAAAAGAAG 404
||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 341 TGATTAACAATGCTGGAATCAGAGGCAATGTCAAGTCGAGTTTGGATTTGTCAGAAGAAG 400
Query 405 AATGGGACAAAGTCTTTAGAACCAACTTGACCGGATCTTGGTTAATATCCAAATACGTCT 464
||||||| |||||||||||||||||||| || |||||||||||| |||| |||| ||||
Sbjct 401 AATGGGATAAAGTCTTTAGAACCAACTTAACTGGATCTTGGTTAGTATCTAAATTCGTCG 460
Query 465 GCCTTTTGATGCGTGACGCTAAGCGTGGGGGCTCGGTGATTAACGTCTCGTCGATCTCTG 524
| ||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||
Sbjct 461 GTGTTTTGATGCGTGACGCTAAACGTGGTGGCTCGGTGATAAACATCTCGTCGATCTCTG 520
Query 525 GGCTTCATCGCGGTTTGTTGCGC-GGTGGACTAGCGTATGCTTGTTCCAAAGGTGGTGTT 583
||||||| || ||||| || | ||| | || |||||||||||||||||||| ||||||
Sbjct 521 GGCTTCACCGTGGTTTACGGC-CAGGTTGTCTTGCGTATGCTTGTTCCAAAGGCGGTGTT 579
Query 584 GACACCATGACGAGGATGATGGCTATTGAGTTAGCTGTTTATAAGATCAGAGTGAACTCG 643
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 580 GACACCATGACGAGGATGATGGCTATTGAGTTAGGTGTTTATAAGATCAGAGTGAACTCG 639
Query 644 ATCGCACCTGGGATTTTCAGGTCAGAGATCACACAAGGTCTTTTCCAGAAAGAGTGGCTC 703
|||||||| ||| ||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 640 ATCGCACCGGGGCTTTTCAGGTCAGAGATCACACAAGGTCTTATGCAGAAAGAATGGCTC 699
Query 704 GAGAAGGTAACGGAAAAGAT-TGTACCATTAAAGATGCAACAGACTGTGGATCCGGGGCT 762
|||| || |||||| || |||||| |||||||||||||||||||||||||| |||||
Sbjct 700 AAGAAAGTTACGGAAC-GAACTGTACCGTTAAAGATGCAACAGACTGTGGATCCAGGGCT 758
Query 763 TACATCTCTCGTTCGCTATCTCATTCACGATTCTTCCCAATATGTCACCGGGAATACATA 822
|||||||||||| || ||||||||||| |||||||| ||||||||||| |||||||| ||
Sbjct 759 TACATCTCTCGTGCGTTATCTCATTCATGATTCTTCTCAATATGTCACTGGGAATACTTA 818
Query 823 CATAGTCGATTCCGGAGCTACACTCCCCGGTGTGCCCATTTTTTCTTCTCTTTGA 877
||| |||||||| ||||||||| | |||||||||||||| ||||||||||| |||
Sbjct 819 CATTGTCGATTCTGGAGCTACATTGCCCGGTGTGCCCATCTTTTCTTCTCTCTGA 873
> Ahg485952 jgi|Araly1|485952|fgenesh2_kg.5__1944__AT3G55290.1
Length=898
Score = 913 bits (494), Expect = 0.0
Identities = 740/859 (86%), Gaps = 16/859 (2%)
Strand=Plus/Plus
Query 26 AATATGAGCAATCATCAAACTAAGCAGGTATTGAAGCAATTGGAGCCATGGTGTGAACTT 85
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1 AATATGAGCAATCATCAAACT---CAGGTGTTGAAGCAATTGGAGCCATGGTGTGAGCTT 57
Query 86 AAAGATAAAGTGGTTCTTGTGACAGGTGCTTCATCTGGTATAGGGAGAGAGATCTGTCTT 145
||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 58 AAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAGATCTGTCTT 117
Query 146 GATCTATG-CAAAGCTGGTTGTAAGATTGTAGCAGCAGCTCGTCGTGTTGATCGTCTCAA 204
||||| || ||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 118 GATCT-TGCCAAAGCTGGTTGTAAGATTATTGCAGCAGCTCGTCGTGTCGATCGTCTCAA 176
Query 205 CTCTCTCTGTTCTGAAATCAACAGCTTTGGTGCAATCGGAGTCCAAGCCGCAGCTCTTGA 264
||||||||| |||||||||||||||| | ||| ||| ||||||||||||||||||||
Sbjct 177 CTCTCTCTGCTCTGAAATCAACAGCTCCAATTCAACCGGGGTCCAAGCCGCAGCTCTTGA 236
Query 265 GCTAGACGTTTCATCAGACGCAGACACTATTCGAAAAGCGGTTAAAG-AAGCTTGGGAAA 323
|||||||||||||||||| |||| ||| |||| ||||||| | || | |||||||||| |
Sbjct 237 GCTAGACGTTTCATCAGATGCAGCCACCATTCAAAAAGCGAT-AAGGGAAGCTTGGGACA 295
Query 324 TCTTTGGAACGATCGATGTTTTGATTAACAATGCTGGAATCAGAGGCAATGTCAAGTCTA 383
||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| |
Sbjct 296 TCTTTGGAAAGATCGATGCGTTGATCAACAATGCCGGAATCAGAGGCAATGTCAAGTCGA 355
Query 384 GTTTGGATTTATCAAAAGAAGAATGGGACAAAGTCTTTAGAACCAACTTGACCGGATCTT 443
|||||||||| || | || ||||||||||| ||||| | ||| ||||| || ||| |||
Sbjct 356 GTTTGGATTTGTCGGAGGATGAATGGGACAACGTCTTCAAAACTAACTTAACGGGACCTT 415
Query 444 GGTTAATATCCAAATACGTCTGCCTTTTGATGCGTGACGCTAAGCGTGGGGGCTCGGTGA 503
||||| |||| ||||| || || |||| |||||||||||||| | || ||||||||||
Sbjct 416 GGTTAGTATCTAAATATGTTTGTGTTTTAATGCGTGACGCTAAAAGAGGTGGCTCGGTGA 475
Query 504 TTAACGTCTCGTCGATCT-CTGGGCTTCATCGCGGTTTGTTGCGCGGTGGACTAGCGTAT 562
| ||| |||| || || | | ||| | | |||||| | |||| ||||||||| || |||
Sbjct 476 TAAACATCTCATCAAT-TGCCGGGGT-C--CGCGGTATCTTGCCCGGTGGACTTGCATAT 531
Query 563 GCTTGTTCCAAAGGTGGTGTTGACACCATGACGAGGATGATGGCTATTGAGTTAGCTGTT 622
|||||||||||||| ||||||||||||||| | ||||||||||| |||||||||| ||||
Sbjct 532 GCTTGTTCCAAAGGCGGTGTTGACACCATGTCAAGGATGATGGCAATTGAGTTAGGTGTT 591
Query 623 TATAAGATCAGAGTGAACTCGATCGCACCTGGGATTTTCAGGTCAGAGATCACACAAGGT 682
| |||||||||||||||||||| || || ||| |||||| |||||||||||||||||||
Sbjct 592 CACAAGATCAGAGTGAACTCGATTGCGCCAGGGCTTTTCAAGTCAGAGATCACACAAGGT 651
Query 683 CTTTTCCAGAAAG-AGTGGCTCGAGAAGGTAACGGAAAAGATTGTACCATTAAAGATGCA 741
||| | || |||| | |||||| |||| || || || | || ||| || |||||| ||||
Sbjct 652 CTTATGCA-AAAGGAATGGCTCAAGAATGTGACCGAGAGGACTGTGCCGTTAAAGGTGCA 710
Query 742 ACAGACTGTGGATCCGGGGCTTACATCTCTCGTTCGCTATCTCATTCACGATTCTTCCCA 801
|||||| || ||||| |||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 711 ACAGACCGTTGATCCAGGGCTTACTTCTCTCGTTCGCTATCTCATTCATGACTCTTCTCA 770
Query 802 ATATGTCA-CCGGGAATACATACATAGTCGATTCCGGAGCTACACTCCCCGGTGTGCCCA 860
|||| | | |||||||||||||||| |||||||| ||||||||| | |||||||||||||
Sbjct 771 ATATAT-ATCCGGGAATACATACATTGTCGATTCTGGAGCTACATTGCCCGGTGTGCCCA 829
Query 861 TTTTTTCTTCTCTTTGAAA 879
||||||| ||||| |||||
Sbjct 830 TTTTTTCATCTCTCTGAAA 848
> Ahg480684 jgi|Araly1|480684|fgenesh2_kg.3__3385__AT2G17845.1
Length=837
Score = 459 bits (248), Expect = 2e-128
Identities = 399/472 (85%), Gaps = 10/472 (2%)
Strand=Plus/Plus
Query 407 TGGGACAAAGTC-TTTAGAACCAACTTGACCGGATCTTGGTTAATATCCAAATACGTCTG 465
|||||||||||| | || |||||||| || ||| |||||||| | |||||||| || ||
Sbjct 367 TGGGACAAAGTCATCAAG-ACCAACTTAACGGGAACTTGGTTAGTCTCCAAATATGTATG 425
Query 466 CCTTTTGATGCGTGACGCTAAGCGTGGGGGCTCGGTGATTAA-CGTCTCGTCGA-TCTCT 523
| |||| ||||| |||||||| ||||| |||||||||| ||| | | | || | |||||
Sbjct 426 CATTTTAATGCGCGACGCTAAACGTGGTGGCTCGGTGA-TAAGCATATTATC-AGTCTCT 483
Query 524 GGGCTTCATCGCGGTTTGTTGCGC-GGTGGACTAGCGTATGCTTGTTCCAAAGGTGGTGT 582
|| || || |||||| | ||| | |||||| | |||||||||||||| ||||| |||||
Sbjct 484 GGCCTCCACCGCGGTCAGGTGC-CTGGTGGAGTCGCGTATGCTTGTTCTAAAGGCGGTGT 542
Query 583 TGACACCATGACGAGGATGATGGCTATTGAGTTAGCTGTTTATAAGATCAGAGTGAACTC 642
|||||||||||| |||||||||||| ||| ||||| |||||| |||||||||||||| ||
Sbjct 543 TGACACCATGACAAGGATGATGGCTGTTGGGTTAGGTGTTTACAAGATCAGAGTGAATTC 602
Query 643 GATCGCACCTGGGATTTTCAGGTCAGAGATCACACAAGGTCTTTTCCAGAAAGAGTGGCT 702
||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 603 GATCGCACCGGGGCTTTTCAGGTCAGAGATCACACAAGGTCTTATGCAGAAAGAGTGGCT 662
Query 703 CGAG-AAGGTAACGGAAAAGATTGTACCATTAAAGATGCAACAGACTGTGGATCCGGGGC 761
|| ||| ||| ||| ||| || ||||||||| | |||||| | |||||||||||||
Sbjct 663 AAAGAAAGTTAA-TGAACGGATAGTCCCATTAAAGGTACAACAGGCAGTGGATCCGGGGC 721
Query 762 TTACATCTCTCGTTCGCTATCTCATTCACGATTCTTCCCAATATGTCACCGGGAATACAT 821
||||||||||||||||||| ||||||||||| || || |||||| || ||||||||||||
Sbjct 722 TTACATCTCTCGTTCGCTACCTCATTCACGACTCGTCTCAATATATCTCCGGGAATACAT 781
Query 822 ACATAGTCGATTCCGGAGCTACACTCCCCGGTGTGCCCATTTTTTCTTCTCT 873
|||| |||||||||||| ||||| | | ||||||||| |||||||| |||||
Sbjct 782 ACATTGTCGATTCCGGAACTACATTGCTCGGTGTGCCTATTTTTTCATCTCT 833
Score = 274 bits (148), Expect = 8e-73
Identities = 209/238 (88%), Gaps = 5/238 (2%)
Strand=Plus/Plus
Query 71 CCATGGTGTGAACTTAAAGATAAAGTGGTTCTTGTGACAGGTGCTTCATCTGGTATAGGG 130
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 91 CCATGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGA 150
Query 131 AGAGAGATCTGTCTTGATCTATG-CAAAGCTGGTTGTAAGATTGTAGCAGCAGCTCGTCG 189
|||||| | |||||||||||| | ||||||||| ||||||||| | |||| |||||||||
Sbjct 151 AGAGAGGTATGTCTTGATCTA-GCCAAAGCTGGCTGTAAGATTATCGCAGAAGCTCGTCG 209
Query 190 TGTTGATCGTCTCAACTCTCTCTGTTCTGAAATCAACAGCTTTG---GTGCAATCGGAGT 246
||| ||||||||||| |||||||| |||||||| || ||||| | | ||| |||| |
Sbjct 210 TGTCGATCGTCTCAAATCTCTCTGCTCTGAAATAAATAGCTTCGAATATTCAACCGGACT 269
Query 247 CCAAGCCGCAGCTCTTGAGCTAGACGTTTCATCAGACGCAGACACTATTCGAAAAGCG 304
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 270 CCAAGCCGCAGCTCTTGAGCTAGACGTTTCATCAGACGCACCCACCATTCAAAAAGCG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5