BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62620.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475086 jgi|Araly1|475086|fgenesh2_kg.2__216__AT1G62620.1 2028 0.0
Ahg475088 jgi|Araly1|475088|fgenesh2_kg.2__218__AT1G62600.1 1653 0.0
Ahg334507 jgi|Araly1|334507|fgenesh1_pg.C_scaffold_1001072 209 4e-53
> Ahg475086 jgi|Araly1|475086|fgenesh2_kg.2__216__AT1G62620.1
Length=1406
Score = 2028 bits (1098), Expect = 0.0
Identities = 1283/1372 (94%), Gaps = 14/1372 (1%)
Strand=Plus/Plus
Query 33 AAATGGCACCTGCATTATCACCAACCAGATCACACCACGTGGCGGTTATCGGTGCTGGAC 92
|||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1 AAATGGAACCTGCATTATCACCAATCAGATCACACCACGTGGCAGTTATCGGTGCTGGAC 60
Query 93 CTGCAGGTCTAGTAGCGGCACGAGAGCTTCGACGAGAAGGTCACTCGGTGGTCGTTTTCG 152
| || |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CCGCCGGTCTAGTGGCGGCGCGAGAGCTTCGACGGGAAGGTCACTCGGTGGTCGTTTTCG 120
Query 153 AGAAACAAAAACAAGTCGGAGGAACCTGGATCTACACCGATGAAGTCGAATCGGATCCGT 212
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAGCAAAAACAAGTTGGAGGAACCTGGATCTACACCGATGAAGTCGAATCGGATCCGT 180
Query 213 TAAGTGTTGACCCGACCCGATCCGTTGTTCATTCAAGCGTCTATAGATCTCTACGAATCA 272
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 181 TAAGTGTTGACCCGACCCGATCCGTTGTCCATTCAAGCGTCTATAGCTCTCTCCGAATCA 240
Query 273 ACGGTACACGAGAGTGTACCGGATACAGAGATTTCCCGTTCGTGGTTCGTTCCGGTG--T 330
||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 241 ACGGTACCCGAGAGTGTACCGGATACAGAGACTACCCGTTCGTGGTTCGTTCCGGTGTAT 300
Query 331 --G--TCTAGAGATCCGAGGAGGTTTCCGAGTCATGGCGAAGTTTTGGCGTATTTGAAAG 386
| |||||||||| |||||||||||||||||| || |||||||||||||||||| |||
Sbjct 301 CGGAATCTAGAGATCGGAGGAGGTTTCCGAGTCACGGTGAAGTTTTGGCGTATTTGCAAG 360
Query 387 ATTTCGCTAAG-GAGTTTGGGATTGAGGAGATGGTTAGGTTTGAGACGGAGGTTGTGAAG 445
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTTCGC-AAGAGAGTTTGGGATTGAGGAGATGGTTAGGTTTGAGACGGAGGTTGTGAAG 419
Query 446 GTTTCTCCGGCGGCGG-AGGAAGGAATCGGGAAGTGGAGGA-TTGAATCGACGGAGAAAG 503
||| |||||||||||| ||| || ||||||||| |||| || ||||||| |||||||| |
Sbjct 420 GTTCCTCCGGCGGCGGAAGG-AGAAATCGGGAAATGGA-GAGTTGAATCAACGGAGAAGG 477
Query 504 AGAAGAAAGTTCGTCGTGATGAGATTTATGATGCTGTTGTTGTTTGTAATGGACATTATG 563
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGAAGAGAGTTCGTCGGGATGAGATTTATGATGCTGTTGTTGTTTGTAATGGACATTATG 537
Query 564 TTGAACCTCGTCTCGCTCAAATTCCTGGTATAAGTTCTTGGCCAGGGAAAGAAATGCATA 623
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 TTGAACCTCGTCTCGCTCAAATTCCTGGTATAAGTTCTTGGCCAGGGAAAGAGATGCATA 597
Query 624 GCCATAATTACCGTATTCCCGAACCATTCAGAGATAAGGTTGTTGTGCTTATTGGGAACT 683
||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||| ||||
Sbjct 598 GCCATAATTACCGTATTCCGGAACCGTTCAAAGATCAGGTTGTTGTGCTTATTGGAAACT 657
Query 684 CTTCAAGTGCTGAGGATATAAGTAGGGACATTGCTAGAGTTGCAAAAGAGGTTCATGTGG 743
||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 658 CTTCAAGCGCTGAGGATATAAGTAGGGACATTGCTACATTTGCCAAAGAGGTTCATGTGG 717
Query 744 CTTGTAGGTCAAATCCAGCTGATACGTTTATCAAACAAACCGGTTATAATAATCTATGGA 803
||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 718 CTTGTAGGTCAAATCCAGCTGATACGTTTATCAAACAGACCGGTTACAGTAATCTATGGA 777
Query 804 CGCATTCAAT-GATTGAGAGTGTTCATGAGGATGGCTCTGTTGTTTATCAGAACGGGAAG 862
|||||||| | ||||||| |||| ||||||||||| || || |||| |||||||||||||
Sbjct 778 CGCATTCA-TCGATTGAGTGTGTCCATGAGGATGGTTCGGTGGTTTTTCAGAACGGGAAG 836
Query 863 ACGATTTCGGTTGATATTATTATGCATTGCACTGGGTATAAGTATCATTTTCCGTTTCTT 922
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 837 ACGATTTCGGTTGATATTATTATGCATTGCACTGGGTATAAGTATCACTTTCCGTTTCTT 896
Query 923 GATACCAATGGAATTGTCACTGTAGATGATAACCGTGTTGGGCCATTGTACAAAGACGTC 982
||||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 897 GATACGAATGGAATTGTCAGTGTAGATGATAACCGTGTCGGACCATTGTACAAAGACGTC 956
Query 983 TTCCCTCCAGCATTTGCACCTTGGCTTTCCTTCATCGGTATACCATGGCAGGTGTTACCG 1042
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 957 TTCCCTCCAGCATTTGCACCTTGGCTTTCTTTCATCGGGATACCATGGCAGGTGTTACCT 1016
Query 1043 TTCCCTATGTTTGAGCTGCAAAGCAAGTGGATCGCGGGTGTTTTATCGGGTCGGATCCCG 1102
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1017 TTCCCTATGTTTGAGCTGCAGAGCAAGTGGATTGCGGGTGTTTTGTCGGGTCGGATACCG 1076
Query 1103 CTTCCTTCCAAGGAAGATATGATGATAGAAATCAAAACCTTTTACTCCACACTTGAAGTC 1162
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 1077 CTGCCTTCCAAGGAAGATATGATAATGGAAATCAAAACCTTTTACTCCACACTTGAATTC 1136
Query 1163 CAAGGGATTCCAAAGCGATATACTCATCGTATGGGCAATACTCAGTTTGAGTATTATAAT 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 CAAGGGATTCCAAAGCGATATACTCATCGTATGGGCAATACTCAGTTTGAGTACGATAAT 1196
Query 1223 TGGTTGGCTTCACAATGCGGATGCTCAGAAACAGAGGAATGGAGGAAAGAGATGTGTTTG 1282
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGGTTGGCTTCGCAATGCGGGTGCTCAGAAACAGAGGAATGGAGGAAAGAGATGTGTTTG 1256
Query 1283 GCGAATGGTGTTAGGAAGGAAGCCCATCCAGAGACGTATAGAGACGAATGGGATGATCAT 1342
||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1257 GCGAATGTTGTGAGGAAGGAAGCCCATCCAGAGACGTACAGAGACGAATGGGAAGATCAT 1316
Query 1343 CACTTAGTTTCTGAAGCTTATCAAGATTTCTCTTTGTACTCATAAACAAAAC 1394
|||||| ||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 1317 CACTTAATTTCTCAAGCTTATCAAGATTTCTCTACGTAGTCATAAACAAAAC 1368
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1430 AATGCCAATACTGCCATTCAATGTAAAA 1457
||||||||||||||||||||||||||||
Sbjct 1379 AATGCCAATACTGCCATTCAATGTAAAA 1406
> Ahg475088 jgi|Araly1|475088|fgenesh2_kg.2__218__AT1G62600.1
Length=1398
Score = 1653 bits (895), Expect = 0.0
Identities = 1217/1373 (89%), Gaps = 20/1373 (1%)
Strand=Plus/Plus
Query 34 AATGGCACCTGCATTATCACCAACCAGATCACACCACGTGGCGGTTATCGGTGCTGGACC 93
|||||||||| | |||||||||| |||||||||||||||||| |||||||| || ||| |
Sbjct 33 AATGGCACCTTCCTTATCACCAATCAGATCACACCACGTGGCAGTTATCGGCGCCGGAGC 92
Query 94 TGCAGG-TCTAGTAGCGGCACGAGAGCTTCGACGAGAAGGTCACTCGGTGGTCGTTTTCG 152
||| || | |||| ||||| |||||||||||||| |||||||| ||||||||||| ||||
Sbjct 93 TGCCGGAT-TAGTCGCGGCGCGAGAGCTTCGACGGGAAGGTCATTCGGTGGTCGTCTTCG 151
Query 153 AGAAACAAAAACAAGTCGGAGGAACCTGGATCTACACCGATGA-AGTCGAATCGGATCCG 211
||| |||||| |||||||||||||| ||||| || |||||| | | ||||| | |||||
Sbjct 152 AGAGACAAAAGCAAGTCGGAGGAACTTGGATTTATACCGATCATA-TCGAACCCGATCCA 210
Query 212 TTAAGTGTTGACCCGACCCGATCCGTTGTTCATTCAAGCGTCTATAGATCTCTACGAATC 271
||||| ||||| ||||||||||||||||||||||| ||||||||| | ||||| |||| |
Sbjct 211 TTAAGCGTTGATCCGACCCGATCCGTTGTTCATTCGAGCGTCTATGGCTCTCTCCGAA-C 269
Query 272 -AACGGT-ACACGAGAGTGTACCGGATACAGAGATTTCCCGTTCGTGGTTCGTTCCGGTG 329
|| | | || ||||||| |||||||||||||| |||||| | | ||||| ||||
Sbjct 270 TAA-TCTCCCTCGTGAGTGTATGGGATACAGAGATTTTCCGTTCACGATCCGTTCTGGTG 328
Query 330 --T--G--TCTAGAGATCCGAGGAGGTTTCCGAGTCATGGCGAAGTTTTGGCGTATTTGA 383
| | |||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 329 TATCGGAATCTAGAGATCCGAGGAGGTTTCCGAGTCATAGTGAAGTTTTGGCGTATTTGC 388
Query 384 AAGATTTCGCTAAGGAGTTTGGGATTGAGGAGATGGTTAGGTTTGAGACGGAGGTTGTGA 443
||||||||||||||||||||| ||||||||||||| || |||||||||| | ||||||||
Sbjct 389 AAGATTTCGCTAAGGAGTTTGCGATTGAGGAGATGATTCGGTTTGAGACTGCGGTTGTGA 448
Query 444 AGGTTTCTCCGGCGGCGGAGGAAGGAATCGGGAAGTGGAGGATTGAATCGACGGAGAAAG 503
||||| ||||||||||||| ||||||||||||| ||||| |||||||| | ||||||||
Sbjct 449 AGGTTGCTCCGGCGGCGGACAAAGGAATCGGGAAATGGAGAATTGAATCTATGGAGAAAG 508
Query 504 AGAAGAAAGTTCGTCGTGATGAGATTTATGATGCTGTTGTTGTTTGTAATGGACATTATG 563
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 AGAAGAGAGTTCGTCGTGATGAGATTTATGATGCTGTTGTTGTTTGTAATGGACATTATA 568
Query 564 TTGAACCTCGTCTCGCTCAAATTCCTGGTATAAGTTCTTGGCCAGGGAAAGAAATGCATA 623
||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||
Sbjct 569 TTGAACCTCGTCTCGCTGAAATTCCTGGGATAAGTTCTTGGCCAGGGAAGGAGATGCATA 628
Query 624 GCCATAATTACCGTATTCCCGAACCATTCAGAGATAAGGTTGTTGTGCTTATTGGGAACT 683
| |||||||| ||||| || ||||| || |||||| |||||||||||||||| |||||||
Sbjct 629 GTCATAATTATCGTATACCGGAACCGTTTAGAGATCAGGTTGTTGTGCTTATAGGGAACT 688
Query 684 CTTCAAGTGCTGAGGATATAAGTAGGGACATTGCTAGAGTTGCAAAAGAGGTTCATGTGG 743
|| | |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 689 CTGCTAGTGCTGATGATATAAGTAGGGATATTGCTAGAGTTGCCAAAGAGGTTCATGTGG 748
Query 744 CTTGTAGGTCAAATCCA-GCTGATACGTTTATCAAACAAACCGGTTATAATAATCTATGG 802
|||||||||||||| | ||||||||||||||| | | ||||||| | ||||||||||
Sbjct 749 CTTGTAGGTCAAATG-ATGCTGATACGTTTATCGAGCGGCCCGGTTACAGTAATCTATGG 807
Query 803 ACGCATTCAATGATTGAGAGTGTTCATGAGGATGGCTCTGTTGTTTATCAGAACGGGAAG 862
| |||||||||||||||| |||| ||||||||||| ||||| |||| ||||||||||||
Sbjct 808 ATGCATTCAATGATTGAGCGTGTCCATGAGGATGGTTCTGTGGTTTTTCAGAACGGGAAA 867
Query 863 ACGATTTCGGTTGATATTATTATGCATTGCACTGGGTATAAGTATCATTTTCCGTTTCTT 922
||||||||||||||| | ||||||||||||||||||||||||||||| || |||||||||
Sbjct 868 ACGATTTCGGTTGATGTAATTATGCATTGCACTGGGTATAAGTATCACTTCCCGTTTCTT 927
Query 923 GATACCAATGGAATTGTCACTGTAGATGATAACCGTGTTGGGCCATTGTACAAAGACGTC 982
|| |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 928 GAAACCAATGGAAATGTTACTGTAGATGATAACCGTGTCGGGCCATTGTACAAAGACGTC 987
Query 983 TTCCCTCCAGCATTTGCACCTTGGCTTTCCTTCATCGGTATACCATGGCAGGT-GTTACC 1041
||||||||||| |||||||| ||||| |||||||| || ||||||||| |||| || |||
Sbjct 988 TTCCCTCCAGCCTTTGCACCATGGCTCTCCTTCATTGGGATACCATGGAAGGTTGT-ACC 1046
Query 1042 GTTCCCTATGTTTGAGCTGCAAAGCAAGTGGATCGCGGGTGTTTTATCGGGTCGGATCCC 1101
|| ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1047 TTTTCCTATGTTTGAGCTGCAGAGCAAGTGGATTGCGGGTGTTTTGTCAGGTCGGATCCC 1106
Query 1102 GCTTCCTTCCAAGGAAGATATGATGATAGAAATCAAAACCTTTTACTCCACACTTGAAGT 1161
|| ||||| |||||||||||||| || |||||||||||||| ||| | ||||||||||
Sbjct 1107 ACTGCCTTCAAAGGAAGATATGATAATGGAAATCAAAACCTTATACGCAACACTTGAAGC 1166
Query 1162 CCAAGGGATTCCAAAGCGATATACTCATCGTATGGGCAATACTCAGTTTGAGTATTATAA 1221
|||||||||| |||||||||||||||| | ||||||| |||||| |||||||| ||||
Sbjct 1167 CCAAGGGATTGCAAAGCGATATACTCACCAAATGGGCATTACTCAATTTGAGTACAATAA 1226
Query 1222 TTGGTTGGCTTCACAATGCGGATGCTCAGAAACAGAGGAATGGAGGAAAGAGATGTGTTT 1281
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1227 TTGGTTGGCTTCACAATGTGGATGCTCAGAAACAGAGGAATGGAGGAAAGAGATGTATTT 1286
Query 1282 GGCGAATGGTGTTAGGAAG-GAAGCCCATCCAGAGACGTATAGAGACGAATGGGATGATC 1340
| ||| |||||| |||||| ||| |||||||||| || ||||||||||||||||||||||
Sbjct 1287 GACGACTGGTGTGAGGAAGAGAA-CCCATCCAGAAACATATAGAGACGAATGGGATGATC 1345
Query 1341 ATCACTTAGTTTCTGAAGCTTATCAAGATTTCTCTTTGTACTCATAAACAAAA 1393
|||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1346 ATCACTTAGTTTCTCAAGCTTATCAAGATTTCTCTTTGTACGCATAAACAAAA 1398
> Ahg334507 jgi|Araly1|334507|fgenesh1_pg.C_scaffold_1001072
Length=1380
Score = 209 bits (113), Expect = 4e-53
Identities = 452/611 (74%), Gaps = 42/611 (7%)
Strand=Plus/Plus
Query 521 GATGAGAT-TTATGATGCTGTTGTTGTTTGTAATGGACATTATGTTGAACCTCGTCTCGC 579
|||||||| || ||||||||||||||||||||||||||||||| |||||| | | ||
Sbjct 478 GATGAGATCTT-TGATGCTGTTGTTGTTTGTAATGGACATTATACAGAACCTAGAGTTGC 536
Query 580 TCAAATTCCTGGTATA-AGTTCTTGGCCAGGGAAAGAA-ATGCATAGCCATAATTACCGT 637
||| ||||||||||| | ||| ||||||||||| | | || |||||||| |||||||||
Sbjct 537 TCATGTTCCTGGTATAGA-TTCATGGCCAGGGAA-GCAGATTCATAGCCACAATTACCGT 594
Query 638 ATTCCCGAACCATTCAGAGATAAGGTTGTTGT-GCTTATTGGGAACTCTT-CAAGTGCTG 695
|||| || | ||||| ||| |||| || || | | || || || | || | |||| |
Sbjct 595 GTTCCTGATCAATTCAAAGACCAGGTGGTGGTAG-TGATAGGAAATT-TTGCGAGTG--G 650
Query 696 AG--GATATAAGTAGGGACATTGCTAGAGTTGCAAAAGAGGTTCATGTGGCTTGTAGGTC 753
|| |||||||| |||||||| | |||| || ||||| || ||| | || | ||| ||
Sbjct 651 AGCTGATATAAGCAGGGACATAACGGGAGTGGCGAAAGAAGTCCATATTGCGTCTAGATC 710
Query 754 AAATCCAGCTGATACGTTTATCAAA-CAAACCGGTTATAATAATCTATGGACG-CATTCA 811
|||||| || | || | ||||| | |||| | | |||||||||| | || ||
Sbjct 711 GAATCCATCTAAGACATAC-TCAAAACTTCCCGGGTCCAGTAATCTATGG-CTTCACTCT 768
Query 812 ATGATTGAGAGTGTTCATGAGGATGGCTCTG-TTGTTTATCAGAACGGGAAGACGATT-T 869
||||| || || || || || ||||| || | |||||| ||||||||| ||| | || |
Sbjct 769 ATGATAGAAAGCGTACACGAAGATGGGTC-GATTGTTTTTCAGAACGGTAAG--G-TTGT 824
Query 870 -CG-GTTGATATTATTATGCATTGCACTGGGTATAAGTATCATTTTCCGTTTCTTGATAC 927
| | ||||| ||| ||||||||||||| || || || || || || ||||| | ||
Sbjct 825 ACAAGCTGATACCATTGTGCATTGCACTGGTTACAAATACCACTTCCCATTTCTCAACAC 884
Query 928 CAATGGA-AT-TGTCACTGTAGATGATAACCGTGTTGGGCCA-TTGTACAAAGACGTCTT 984
||||| || | | ||||| || |||||| ||||||| || || |||||| |||| ||
Sbjct 885 AAATGGTTATAT-T-ACTGTCGAGGATAACTGTGTTGGACCGCTT-TACAAACACGTGTT 941
Query 985 CCCTCCAGCATTTGCACCTTGGC-TTTCCTTCATCGGTATACCATGGCAGGTGTTACCG- 1042
|| || || |||| || ||| |||||||||||||| |||| ||| | || || |
Sbjct 942 TCCGCCTGCGCTTGCTCCC-GGCCTTTCCTTCATCGGTTTACCCTGG-A--TGACACTGC 997
Query 1043 --TTCCCTATGTTTGAGCTGCAAAGCAAGTGGATCGCGGGTGTTTTATCGGGTCG-GATC 1099
||| |||||||||||| ||||| |||||| | || | | ||| || ||||| | ||
Sbjct 998 AATTCTTTATGTTTGAGCTCCAAAGTAAGTGGGTGGCTGCAGCTTTGTCCGGTCGTG-TC 1056
Query 1100 CCGCTTCCTTC 1110
| ||||||||
Sbjct 1057 ACACTTCCTTC 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5