BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62640.1
Length=1855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475085 jgi|Araly1|475085|fgenesh2_kg.2__215__AT1G62640.1 2591 0.0
> Ahg475085 jgi|Araly1|475085|fgenesh2_kg.2__215__AT1G62640.1
Length=1773
Score = 2591 bits (1403), Expect = 0.0
Identities = 1686/1815 (93%), Gaps = 50/1815 (3%)
Strand=Plus/Plus
Query 14 GCATTGGAATCTCCTCAAAATCGAGCTGTCACACTCACCTCCCCTGTCTCCTCTTCGCTT 73
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCATTGGAATCTCCTCAAAATTGAGCTGTCACACTCACCTCCCCTGTCTCCTCTTCGCTT 60
Query 74 CGGTACTTCCGAAGATTTCATTTTCTAGACACTCCATCCTCTCTCACACACACCTTAATT 133
|||||||||||||||||| | | | | | ||||||||||||||||| ||||
Sbjct 61 CGGTACTTCCGAAGATTTGA---T-T------T---T-CTCTCTCACACACACCTAAATT 106
Query 134 TCGAATTTTTGTCAATTGGTGATGCAGTTACTCTGAA-CTCGAGCTGAGAGAG--AGGCA 190
||||||||||||| ||||||||| || ||||||| || |||||||||||||| || ||
Sbjct 107 TCGAATTTTTGTCTATTGGTGATTCAATTACTCT-AATTTCGAGCTGAGAGAGACAGACA 165
Query 191 TAGAGATCCTTGCGATTCGTTGTATCCGTAACATTTAACAATCTCGTTTTGTTTTTCTTC 250
||||||||||| ||||||||||||||| ||||||| || | ||||||||||||||
Sbjct 166 TAGAGATCCTT-CGATTCGTTGTATCCAAAACATTT---AA---C-TTTTGTTTTTCTTC 217
Query 251 TGTTCCTCTATTATCAACAATCAAATGGCTAATGCATCTGGGTTCTTCACTCATCCTTCA 310
|||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 218 TGTTCCTC--TTATC-A-AATC-AATGGCGAATGCATCTGGGTTCTTCACTCATCCTTCA 272
Query 311 ATTCCTAACTTGCGAAGCAGAATCCATGTTCCGGTTAGAGTTTCTGGATCTGGGTTTTGC 370
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 273 ATTCCTAACTTACGAAGCAGAATCCATGTTCCGATTAGAGTTTCTGGATCTGGGTTTTGC 332
Query 371 GTTTCCAATCGATTCTCTAAGAGGGTTTTGTGCTCTAGCGTCAGCTCCGTCGATAAGGAT 430
||||| | ||||||||| || |||||||||||||||||||||||||| ||||||| ||
Sbjct 333 GTTTCGAGTCGATTCTCCAAAAGGGTTTTGTGCTCTAGCGTCAGCTCTATCGATAAACAT 392
Query 431 GCTTCGTCTTCTCCTTCTCAATATCAACGACCCAGGCTAGTGCCGAGTGGCTGCAAATTG 490
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GCTTCGTCGTCTCCTTCTGAATATCAACGACCCAGGCTAGTGCCGAGTGGCTGCAAATTG 452
Query 491 ATTGGATGTGGATCAGCAGTTCCAAGTCTTCTGATTTCTAATGATGATCTCGCTAAAATA 550
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATTGGATGTGGTTCAGCAGTTCCAAGTCTTCTGATTTCTAATGATGATCTCGCTAAAATA 512
Query 551 GTTGATACTAATGATGAATGGATTGCTACTCGTACTGGTATTCGCAACCGTCGAGTTGTC 610
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 513 GTCGATACTAATGATGAATGGATAGCTACTCGTACTGGTATTCGCAACCGTCGAGTTGTC 572
Query 611 TCAGGCAAAGATAGCTTGGTTGGCTTAGCAGTAGAAGCAGCAACCAAAGCTCTTGAAATG 670
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 573 TCAGGCAAAGATAGCTTGGTTGGCTTAGCAGTAGAAGCAGCAACCAAAGCCCTTGAAATG 632
Query 671 GCTGAGGTTGTTCCTGAAGATATTGACTTAGTCTTGATGTGTACTTCCACTCCTGATGAT 730
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 633 GCTGAGGTTGTTCCGGAAGATATAGACTTAGTCTTGATGTGCACTTCCACTCCTGATGAT 692
Query 731 CTATTTGGTGCTGCTCCACAGATTCAAAAGGCACTTGGTTGCACAAAGAACCCATTGGCT 790
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 693 CTATTTGGTGCTGCTCCACAGATTCAAAAGGCACTTGGTTGCACGAAGAACCCATTGGCT 752
Query 791 TATGATATCACAGCTGCTTGTAGTGGATTTGTTTTGGGTCTAGTTTCAGCTGCTTGTCAT 850
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TACGATATCACAGCTGCTTGTAGTGGATTTGTTTTGGGTCTAGTTTCAGCTGCTTGTCAT 812
Query 851 ATAAGGGGAGGCGGTTTTAAGAACGTTTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTT 910
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 813 ATAAGGGGAGGCGGTTTTAAGAATGTTTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTT 872
Query 911 GTTGATTGGACGGATAGAGGGACTTGCATTCTATTTGGAGATGCTGCTGGTGCTGTGGTT 970
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 873 GTTGACTGGACGGATAGAGGGACTTGCATTCTATTTGGGGACGCTGCTGGTGCTGTGGTT 932
Query 971 GTTCAGGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGATGGG 1030
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 933 GTTCAGGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTCGATGTGCACAGCGATGGG 992
Query 1031 GATGGTCGAAGACATTTGAATGCTTCTGTTAAAGAATCCCAAAACGATGGTGAATCAAGC 1090
|| |||||||||||| ||||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 993 GACGGTCGAAGACATCTGAATGCTTCTATTAAAGAATCCCAAATCGATGGTGAATCGAGT 1052
Query 1091 TCCAATGGCTCGGTGTTTGGAGACTTTCCACCAAAACAATCTTCATATTCTTGTATTCAG 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TCCAATGGCTCGGTGTTTGGAGACTTTCCACCAAAACAATCTTCATATTCTTGTATTCAG 1112
Query 1151 ATGAATGGAAAAGAGGTCTTTCGCTTTGCTGTCAAATGTGTTCCTCAATCTATTGAATCT 1210
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1113 ATGAATGGGAAAGAGGTCTTTCGCTTTGCTGTAAAATGTGTTCCTCAATCTATTGAGTCC 1172
Query 1211 GCTTTACAAAAAGCTGGTCTTCCTGCTTCTGCCATCGACTGGCTCCTCCTCCACCAGGCG 1270
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1173 GCTTTACAAAAAGCCGGTCTTCCTGCTTCTGCCATCGACTGGCTCCTCCTCCATCAGGCG 1232
Query 1271 AACCAGAGAATAATAGACTCTGTGGCTACAAGGCTGCATTTCCCACCAGAGAGAGTCATA 1330
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1233 AACCAGAGAATAATAGACTCTGTGGCTACAAGGCTGCATTTTCCACCAGAGCGAGTCATA 1292
Query 1331 TCGAATTTGGCTAATTATGGTAACACGAGCGCTGCTTCGATTCCGCTGGCTCTTGATGAG 1390
||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct 1293 TCGAATTTGGCTAATTACGGTAACACGAGCGCTGCTTCCATCCCTCTGGCTCTTGATGAG 1352
Query 1391 GCAGTGAGAAGCGGAAAAGTTAAACCAGGACATACCATAGCGACATCCGGTTTTGGAGCC 1450
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1353 GCAGTTAGAAGCGGAAAAGTTAAACCAGGACATACCATAGCAACATCCGGTTTTGGAGCC 1412
Query 1451 GGTTTAACGTGGGGATCAGCAATTATGCGATGGAGGTGAATGGCTAAGTCCAACAATGTA 1510
|||||||||||||||||||||||| | |||||||| ||||||||||||||| ||| ||||
Sbjct 1413 GGTTTAACGTGGGGATCAGCAATTGTCCGATGGAGATGAATGGCTAAGTCCGACA-TGTA 1471
Query 1511 AGTTAACTTCAGAGCCAAAGCTTTTTT-CTCCCTCGAGGAACACTGGAAATTGGTTTAAC 1569
|||||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||
Sbjct 1472 AGTTAACTTCAGAGCCAAAGTTTTTTTTCTCCCCCGACGAACACTGGAAATTGGTTTAAA 1531
Query 1570 CGGTCTTGTTTAGTCCGGTTAAACTAAAGGTAAAGCACATTTTGTCTGAATTCAGTCTCT 1629
|||||||||| || |||||||||||| ||||||||| |||||||||||||||| ||||||
Sbjct 1532 CGGTCTTGTTAAGCCCGGTTAAACTAGAGGTAAAGCGCATTTTGTCTGAATTCGGTCTCT 1591
Query 1630 CtttttttGAAGGTT-CATTGTTGTTACTTGTTTAACTTTGTTAGTTATTTCGAATGCTA 1688
|| |||||||||||| |||||||||||| |||| | ||| | || | |||||||||
Sbjct 1592 CTCTTTTTGAAGGTTTCATTGTTGTTACGTGTT-A--TTT---A-TT-T--CGAATGCTA 1641
Query 1689 ATAACCAAAAAGAAG-AAA-GAAAAGGGAGCATTCTTTCATCATTTCTTGTTTGTAATGT 1746
|||| ||||||||| ||| ||||| | |||||||||| |||||||||||||||||||||
Sbjct 1642 ATAATGAAAAAGAAGGAAAAGAAAAAGTAGCATTCTTT-ATCATTTCTTGTTTGTAATGT 1700
Query 1747 TAAGACAACATTTCTCCATTTGCTTAAATCTT-TTCTTCTTCTGTTTTTGAGAACTATTA 1805
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 1701 TAAGACAACATTTCTCCATTTGCTTAA-TCTTGTT-TTCTTCTGTTTTTGAGAACTATTA 1758
Query 1806 GAATCAAAATGTTTT 1820
| |||| |||| |||
Sbjct 1759 GGATCAGAATGGTTT 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69667058105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5