BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62640.1 Length=1855 Score E Sequences producing significant alignments: (Bits) Value Ahg475085 jgi|Araly1|475085|fgenesh2_kg.2__215__AT1G62640.1 2591 0.0 > Ahg475085 jgi|Araly1|475085|fgenesh2_kg.2__215__AT1G62640.1 Length=1773 Score = 2591 bits (1403), Expect = 0.0 Identities = 1686/1815 (93%), Gaps = 50/1815 (3%) Strand=Plus/Plus Query 14 GCATTGGAATCTCCTCAAAATCGAGCTGTCACACTCACCTCCCCTGTCTCCTCTTCGCTT 73 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 GCATTGGAATCTCCTCAAAATTGAGCTGTCACACTCACCTCCCCTGTCTCCTCTTCGCTT 60 Query 74 CGGTACTTCCGAAGATTTCATTTTCTAGACACTCCATCCTCTCTCACACACACCTTAATT 133 |||||||||||||||||| | | | | | ||||||||||||||||| |||| Sbjct 61 CGGTACTTCCGAAGATTTGA---T-T------T---T-CTCTCTCACACACACCTAAATT 106 Query 134 TCGAATTTTTGTCAATTGGTGATGCAGTTACTCTGAA-CTCGAGCTGAGAGAG--AGGCA 190 ||||||||||||| ||||||||| || ||||||| || |||||||||||||| || || Sbjct 107 TCGAATTTTTGTCTATTGGTGATTCAATTACTCT-AATTTCGAGCTGAGAGAGACAGACA 165 Query 191 TAGAGATCCTTGCGATTCGTTGTATCCGTAACATTTAACAATCTCGTTTTGTTTTTCTTC 250 ||||||||||| ||||||||||||||| ||||||| || | |||||||||||||| Sbjct 166 TAGAGATCCTT-CGATTCGTTGTATCCAAAACATTT---AA---C-TTTTGTTTTTCTTC 217 Query 251 TGTTCCTCTATTATCAACAATCAAATGGCTAATGCATCTGGGTTCTTCACTCATCCTTCA 310 |||||||| ||||| | |||| |||||| |||||||||||||||||||||||||||||| Sbjct 218 TGTTCCTC--TTATC-A-AATC-AATGGCGAATGCATCTGGGTTCTTCACTCATCCTTCA 272 Query 311 ATTCCTAACTTGCGAAGCAGAATCCATGTTCCGGTTAGAGTTTCTGGATCTGGGTTTTGC 370 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 273 ATTCCTAACTTACGAAGCAGAATCCATGTTCCGATTAGAGTTTCTGGATCTGGGTTTTGC 332 Query 371 GTTTCCAATCGATTCTCTAAGAGGGTTTTGTGCTCTAGCGTCAGCTCCGTCGATAAGGAT 430 ||||| | ||||||||| || |||||||||||||||||||||||||| ||||||| || Sbjct 333 GTTTCGAGTCGATTCTCCAAAAGGGTTTTGTGCTCTAGCGTCAGCTCTATCGATAAACAT 392 Query 431 GCTTCGTCTTCTCCTTCTCAATATCAACGACCCAGGCTAGTGCCGAGTGGCTGCAAATTG 490 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 393 GCTTCGTCGTCTCCTTCTGAATATCAACGACCCAGGCTAGTGCCGAGTGGCTGCAAATTG 452 Query 491 ATTGGATGTGGATCAGCAGTTCCAAGTCTTCTGATTTCTAATGATGATCTCGCTAAAATA 550 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 ATTGGATGTGGTTCAGCAGTTCCAAGTCTTCTGATTTCTAATGATGATCTCGCTAAAATA 512 Query 551 GTTGATACTAATGATGAATGGATTGCTACTCGTACTGGTATTCGCAACCGTCGAGTTGTC 610 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 513 GTCGATACTAATGATGAATGGATAGCTACTCGTACTGGTATTCGCAACCGTCGAGTTGTC 572 Query 611 TCAGGCAAAGATAGCTTGGTTGGCTTAGCAGTAGAAGCAGCAACCAAAGCTCTTGAAATG 670 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 573 TCAGGCAAAGATAGCTTGGTTGGCTTAGCAGTAGAAGCAGCAACCAAAGCCCTTGAAATG 632 Query 671 GCTGAGGTTGTTCCTGAAGATATTGACTTAGTCTTGATGTGTACTTCCACTCCTGATGAT 730 |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 633 GCTGAGGTTGTTCCGGAAGATATAGACTTAGTCTTGATGTGCACTTCCACTCCTGATGAT 692 Query 731 CTATTTGGTGCTGCTCCACAGATTCAAAAGGCACTTGGTTGCACAAAGAACCCATTGGCT 790 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 693 CTATTTGGTGCTGCTCCACAGATTCAAAAGGCACTTGGTTGCACGAAGAACCCATTGGCT 752 Query 791 TATGATATCACAGCTGCTTGTAGTGGATTTGTTTTGGGTCTAGTTTCAGCTGCTTGTCAT 850 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 TACGATATCACAGCTGCTTGTAGTGGATTTGTTTTGGGTCTAGTTTCAGCTGCTTGTCAT 812 Query 851 ATAAGGGGAGGCGGTTTTAAGAACGTTTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTT 910 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 813 ATAAGGGGAGGCGGTTTTAAGAATGTTTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTT 872 Query 911 GTTGATTGGACGGATAGAGGGACTTGCATTCTATTTGGAGATGCTGCTGGTGCTGTGGTT 970 ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 873 GTTGACTGGACGGATAGAGGGACTTGCATTCTATTTGGGGACGCTGCTGGTGCTGTGGTT 932 Query 971 GTTCAGGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGATGGG 1030 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 933 GTTCAGGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTCGATGTGCACAGCGATGGG 992 Query 1031 GATGGTCGAAGACATTTGAATGCTTCTGTTAAAGAATCCCAAAACGATGGTGAATCAAGC 1090 || |||||||||||| ||||||||||| ||||||||||||||| |||||||||||| || Sbjct 993 GACGGTCGAAGACATCTGAATGCTTCTATTAAAGAATCCCAAATCGATGGTGAATCGAGT 1052 Query 1091 TCCAATGGCTCGGTGTTTGGAGACTTTCCACCAAAACAATCTTCATATTCTTGTATTCAG 1150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 TCCAATGGCTCGGTGTTTGGAGACTTTCCACCAAAACAATCTTCATATTCTTGTATTCAG 1112 Query 1151 ATGAATGGAAAAGAGGTCTTTCGCTTTGCTGTCAAATGTGTTCCTCAATCTATTGAATCT 1210 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1113 ATGAATGGGAAAGAGGTCTTTCGCTTTGCTGTAAAATGTGTTCCTCAATCTATTGAGTCC 1172 Query 1211 GCTTTACAAAAAGCTGGTCTTCCTGCTTCTGCCATCGACTGGCTCCTCCTCCACCAGGCG 1270 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1173 GCTTTACAAAAAGCCGGTCTTCCTGCTTCTGCCATCGACTGGCTCCTCCTCCATCAGGCG 1232 Query 1271 AACCAGAGAATAATAGACTCTGTGGCTACAAGGCTGCATTTCCCACCAGAGAGAGTCATA 1330 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1233 AACCAGAGAATAATAGACTCTGTGGCTACAAGGCTGCATTTTCCACCAGAGCGAGTCATA 1292 Query 1331 TCGAATTTGGCTAATTATGGTAACACGAGCGCTGCTTCGATTCCGCTGGCTCTTGATGAG 1390 ||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||| Sbjct 1293 TCGAATTTGGCTAATTACGGTAACACGAGCGCTGCTTCCATCCCTCTGGCTCTTGATGAG 1352 Query 1391 GCAGTGAGAAGCGGAAAAGTTAAACCAGGACATACCATAGCGACATCCGGTTTTGGAGCC 1450 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1353 GCAGTTAGAAGCGGAAAAGTTAAACCAGGACATACCATAGCAACATCCGGTTTTGGAGCC 1412 Query 1451 GGTTTAACGTGGGGATCAGCAATTATGCGATGGAGGTGAATGGCTAAGTCCAACAATGTA 1510 |||||||||||||||||||||||| | |||||||| ||||||||||||||| ||| |||| Sbjct 1413 GGTTTAACGTGGGGATCAGCAATTGTCCGATGGAGATGAATGGCTAAGTCCGACA-TGTA 1471 Query 1511 AGTTAACTTCAGAGCCAAAGCTTTTTT-CTCCCTCGAGGAACACTGGAAATTGGTTTAAC 1569 |||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||||| Sbjct 1472 AGTTAACTTCAGAGCCAAAGTTTTTTTTCTCCCCCGACGAACACTGGAAATTGGTTTAAA 1531 Query 1570 CGGTCTTGTTTAGTCCGGTTAAACTAAAGGTAAAGCACATTTTGTCTGAATTCAGTCTCT 1629 |||||||||| || |||||||||||| ||||||||| |||||||||||||||| |||||| Sbjct 1532 CGGTCTTGTTAAGCCCGGTTAAACTAGAGGTAAAGCGCATTTTGTCTGAATTCGGTCTCT 1591 Query 1630 CtttttttGAAGGTT-CATTGTTGTTACTTGTTTAACTTTGTTAGTTATTTCGAATGCTA 1688 || |||||||||||| |||||||||||| |||| | ||| | || | ||||||||| Sbjct 1592 CTCTTTTTGAAGGTTTCATTGTTGTTACGTGTT-A--TTT---A-TT-T--CGAATGCTA 1641 Query 1689 ATAACCAAAAAGAAG-AAA-GAAAAGGGAGCATTCTTTCATCATTTCTTGTTTGTAATGT 1746 |||| ||||||||| ||| ||||| | |||||||||| ||||||||||||||||||||| Sbjct 1642 ATAATGAAAAAGAAGGAAAAGAAAAAGTAGCATTCTTT-ATCATTTCTTGTTTGTAATGT 1700 Query 1747 TAAGACAACATTTCTCCATTTGCTTAAATCTT-TTCTTCTTCTGTTTTTGAGAACTATTA 1805 ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct 1701 TAAGACAACATTTCTCCATTTGCTTAA-TCTTGTT-TTCTTCTGTTTTTGAGAACTATTA 1758 Query 1806 GAATCAAAATGTTTT 1820 | |||| |||| ||| Sbjct 1759 GGATCAGAATGGTTT 1773 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69667058105 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5