BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62690.1 Length=680 Score E Sequences producing significant alignments: (Bits) Value Ahg907173 jgi|Araly1|907173|Al_scaffold_0002_254 340 6e-93 > Ahg907173 jgi|Araly1|907173|Al_scaffold_0002_254 Length=453 Score = 340 bits (184), Expect = 6e-93 Identities = 381/468 (81%), Gaps = 45/468 (10%) Strand=Plus/Plus Query 100 ATGCGGTACAAGAGAAGATTTGTGACAGTTTACAGAGATTTTCCAGAAGGTTGTGGTGTT 159 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGCGGTACAAGAGAAGATTTGTGACAGTTTACAGGGATTTTCCAGAAGGTTGTGGTGTT 60 Query 160 CCTTCAAAACCTATATCCAATGCTGATGAAAGTTTT-ATGCAATCTAAGTTCAATAAGGA 218 |||||||||| | |||||||||||||||| |||| |||||||||||||| |||||| Sbjct 61 CCTTCAAAACATTTATCCAATGCTGATGAGC-TTTTGATGCAATCTAAGTT---TAAGGA 116 Query 219 TGGAATTGTCTTGCAGGCTCATGAAGACTTCTCAA-AGATAACAAAGGAGTCATCGAATC 277 |||||||||| ||||| |||||| ||||||| | | | ||||||||||| ||||| ||| Sbjct 117 TGGAATTGTCCTGCAGTCTCATGGAGACTTC-CTAGACATAACAAAGGAATCATCAAATG 175 Query 278 ATTCGGAGACCGAGAATTCTAGAACTGAAGA-T---TTGTTGGATG-AA-GGATCG-GTT 330 ||||||||||||||| ||||| |||||| || | || ||| || || ||| | ||| Sbjct 176 ATTCGGAGACCGAGACTTCTATAACTGAGGAATCGATTCTTGAATCTAATGGAA-GTGTT 234 Query 331 CTTGATTCTAATGGAAGTGTTACTGATTGTCA-AG-AGGACAGAGA--AAGA-GAGATGA 385 | ||| | | | ||| | | || || | || || | || || |||| ||||||| Sbjct 235 CAAGAT-C-A-TC-AAGAGG-AG-GAAGGT-ATAGGAGAA-AGGGATGAAGAAGAGATGA 286 Query 386 GCTCGGTGAAGAAGAGATGTTTGAGTTCACATAACTTAACAAGTG-AAGTTGAGACAGA- 443 ||||||| |||||||||||||||||||||||||||| ||| | || ||||||||||||| Sbjct 287 GCTCGGTAAAGAAGAGATGTTTGAGTTCACATAACTCAACCA-TGGAAGTTGAGACAGAT 345 Query 444 GA-G-G-AT-----A--G-G--T-ATAGTTTTGGGACTTGCAGCTAAGGCGAAATGCCCT 489 | | | || | | | | || |||| |||||| |||||||| ||||||||||| Sbjct 346 GTTGTGGATGTCTCAAAGAGAGTTATTGTTTCGGGACTCCCAGCTAAGTCGAAATGCCCT 405 Query 490 TGGAGACAACCGAAGATCCGAGGTTCAAGACAGGTGAATGATTTGAAC 537 ||||||||||| |||| || |||||||||||||||||||||||||||| Sbjct 406 TGGAGACAACCTAAGAACCTAGGTTCAAGACAGGTGAATGATTTGAAC 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24970510635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5