BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62690.1
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907173 jgi|Araly1|907173|Al_scaffold_0002_254 340 6e-93
> Ahg907173 jgi|Araly1|907173|Al_scaffold_0002_254
Length=453
Score = 340 bits (184), Expect = 6e-93
Identities = 381/468 (81%), Gaps = 45/468 (10%)
Strand=Plus/Plus
Query 100 ATGCGGTACAAGAGAAGATTTGTGACAGTTTACAGAGATTTTCCAGAAGGTTGTGGTGTT 159
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGCGGTACAAGAGAAGATTTGTGACAGTTTACAGGGATTTTCCAGAAGGTTGTGGTGTT 60
Query 160 CCTTCAAAACCTATATCCAATGCTGATGAAAGTTTT-ATGCAATCTAAGTTCAATAAGGA 218
|||||||||| | |||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 61 CCTTCAAAACATTTATCCAATGCTGATGAGC-TTTTGATGCAATCTAAGTT---TAAGGA 116
Query 219 TGGAATTGTCTTGCAGGCTCATGAAGACTTCTCAA-AGATAACAAAGGAGTCATCGAATC 277
|||||||||| ||||| |||||| ||||||| | | | ||||||||||| ||||| |||
Sbjct 117 TGGAATTGTCCTGCAGTCTCATGGAGACTTC-CTAGACATAACAAAGGAATCATCAAATG 175
Query 278 ATTCGGAGACCGAGAATTCTAGAACTGAAGA-T---TTGTTGGATG-AA-GGATCG-GTT 330
||||||||||||||| ||||| |||||| || | || ||| || || ||| | |||
Sbjct 176 ATTCGGAGACCGAGACTTCTATAACTGAGGAATCGATTCTTGAATCTAATGGAA-GTGTT 234
Query 331 CTTGATTCTAATGGAAGTGTTACTGATTGTCA-AG-AGGACAGAGA--AAGA-GAGATGA 385
| ||| | | | ||| | | || || | || || | || || |||| |||||||
Sbjct 235 CAAGAT-C-A-TC-AAGAGG-AG-GAAGGT-ATAGGAGAA-AGGGATGAAGAAGAGATGA 286
Query 386 GCTCGGTGAAGAAGAGATGTTTGAGTTCACATAACTTAACAAGTG-AAGTTGAGACAGA- 443
||||||| |||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 287 GCTCGGTAAAGAAGAGATGTTTGAGTTCACATAACTCAACCA-TGGAAGTTGAGACAGAT 345
Query 444 GA-G-G-AT-----A--G-G--T-ATAGTTTTGGGACTTGCAGCTAAGGCGAAATGCCCT 489
| | | || | | | | || |||| |||||| |||||||| |||||||||||
Sbjct 346 GTTGTGGATGTCTCAAAGAGAGTTATTGTTTCGGGACTCCCAGCTAAGTCGAAATGCCCT 405
Query 490 TGGAGACAACCGAAGATCCGAGGTTCAAGACAGGTGAATGATTTGAAC 537
||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 406 TGGAGACAACCTAAGAACCTAGGTTCAAGACAGGTGAATGATTTGAAC 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24970510635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5