BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62700.1 Length=1185 Score E Sequences producing significant alignments: (Bits) Value Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1 1725 0.0 Ahg939264 jgi|Araly1|939264|scaffold_503455.1 189 4e-47 Ahg940784 jgi|Araly1|940784|scaffold_601328.1 65.8 7e-10 > Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1 Length=1209 Score = 1725 bits (934), Expect = 0.0 Identities = 1122/1208 (93%), Gaps = 32/1208 (3%) Strand=Plus/Plus Query 1 ATGAATTCGTTTTCACAAGTACCTCCTGGCTTCAGATTTCATCCTACTGATGAAGAACTT 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGAATTCGTTTTCACAAGTACCTCCGGGCTTCAGATTTCATCCTACTGATGAAGAACTT 60 Query 61 GTAGACTACTACTTGAGGAAAAAAGTTGCATCAAAGAGAATAGAAATCGATATCATCAAG 120 || ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| Sbjct 61 GTTGACTACTACTTGAGGAAAAAAGTAGCATCGAAGAGAATAGAAATCGATTTCATCAAT 120 Query 121 GATGTTGATCTTTACAAGATTGAGCCATGTGATCTTCAAGAGTTATGCAAGATAGGAAAC 180 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 GACGTTGATCTTTACAAGATTGAGCCATGGGATCTTCAAGAGTTATGCAAGATAGGAAAC 180 Query 181 GAAGAGCAGAGCGAATGGTACTTCTTTAGTCATAAAGACAAGAAGTATCCCACGGGAACT 240 |||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 181 GAAGAGCAAAGCGAATGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCTACAGGAACT 240 Query 241 CGAACCAATAGAGCCACGAAAGCAGGATTTTGGAAAGCCACTGGAAGAGACAAGGCTATA 300 |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 241 CGAACCAATAGAGCGACGAAAGCAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCTATA 300 Query 301 TATATAAGACATAGTCTTATCGGTATGAGGAAAACACTTGTGTTTTACAAAGGAAGAGCC 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 301 TATATAAGACATAGTCTTATCGGTATGAGGAAGACACTTGTGTTTTACAAAGGAAGAGCC 360 Query 361 CCAAATGGTCAGAAATCCGATTGGATCATGCACGAATATCGCTTAGAAACAAGTGAAAAT 420 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 361 CCAAATGGACAGAAATCCGATTGGATCATGCACGAATATCGCTTAGAAACAAATGAAAAT 420 Query 421 GGAACCCCTCAGGAAGAAGGATGGGTAGTATGTAGGGTATTCAAGAAGAAATTGGCAGCG 480 ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 421 GGAACTCCTCAGGAAGAAGGATGGGTGGTATGTAGGGTGTTCAAGAAGAAATTGGCAGCG 480 Query 481 ACAGTGAGGAAAATGGGAGATTACCATTCATCACCATCGCAGCATTGGTACGATGATCAG 540 || ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| Sbjct 481 ACGGTGAGGAAAATGGGAGATTACAATTCATCACCAT--C-GCATTGGTACGATGATCAG 537 Query 541 CTCTCTTTTATGGCCTCCGAG-ATCATTTCTAGTTCTCCACGACAGTTTCTTCCCAATCA 599 ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 538 CTCTCTTTTATGGCCTCCGAGCTTGA-TTCTAGTTCTCCACGACAGTTTCTTCCCAATCA 596 Query 600 TCATTATAACCGCCACCATCACCAGCA---G-A--CATTGCCTTGTGGCCTCAATGC--- 650 |||||||||||||||||||||||| || | | |||| ||||||||||||||||| Sbjct 597 TCATTATAACCGCCACCATCACCATCACCAGCATACATTACCTTGTGGCCTCAATGCGTC 656 Query 651 ---A--TT---CA---A-CAACAACAAT--CC-TAACTTGCAATGCAAGCAAGAGCTCGA 695 | || || | ||||||||| || ||||||||||||||||||||||||||| Sbjct 657 TTCAGCTTATGCATTCAACAACAACAACAACCCTAACTTGCAATGCAAGCAAGAGCTCGA 716 Query 696 GTTACATTACAATCAAATGGTACAACATCAACAACAAAACCATCATCTTCGTGAATCTAT 755 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 717 GTTACATTACAATCACATGGTACAACATCAACAACAAAACCATCATCTGCGTGAATCTAT 776 Query 756 GTTTCTCCAGCTTCCTCAGCTCGAAAGCCCTACCAGTAATTGCAATTCTGACAACAACAA 815 ||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||| Sbjct 777 GTTCCTCCAGCTTCCTCAGCTCGAAAGCCCTACTAGTAATTGCAACTCTAACAACAACAA 836 Query 816 TAACACAAGAAATATTAGTAACTTGCAGAAATCATCAAATATATCTCATGAGGAACAATT 875 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 837 TAACACAAGAAATATTGGTAACTTGCAGAAATCATCAAATATCTCTCATGAGGAACAATT 896 Query 876 GCAACAAGGGAATCAAAGTTTCAGCTCTCTGTATTACGATCAAGGAGTAGAGCAAATGAC 935 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 897 GCAACAAGGGAATCAAAGTTTCAGCACTCTTTATTACGATCAAGGAGTAGAGCAAATGAC 956 Query 936 TACTGACTGGAGAGTTCTCGATAAATTTGTTGCTTCACAGCTTAGCAATGATGAAGAGGC 995 |||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||| Sbjct 957 TACTGATTGGAGAGTTTTCGATAAATTTGTTGCTTCACAGCTTAGCAATGA--A-GAGGC 1013 Query 996 TGCAGCCGTGGTTTCTTCTTCTTCTCATCAAAACAACGTCAAGATTGACACGAGAAACAC 1055 |||||||| || |||| | ||||||||||| |||||||||||||||||||| |||||| | Sbjct 1014 TGCAGCCGAGGCTTCTACCTCTTCTCATCACAACAACGTCAAGATTGACACAAGAAACCC 1073 Query 1056 GGGTTATCATGTGATAGATGAGGGAATAAATTTGCCGGAGAATGATTCTGAAAGGGTTGT 1115 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 GGTTTATCAAGTGATAGATGAGGGAATAAATTTGCCGGAGAATGATTCTGAAAGGGTTGT 1133 Query 1116 TGAAATGGGAGAAGAGTATTCAAATGCTCATGCTGCTTCTACTTCTTCAAGTTGTCAGAT 1175 ||||||| |||| |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 1134 TGAAATGAGAGATGAGTATACAAATTCTCATGCTGCTTCTACTTCTTCGAGTTGTCAGAT 1193 Query 1176 TGATCTCT 1183 |||||||| Sbjct 1194 TGATCTCT 1201 > Ahg939264 jgi|Araly1|939264|scaffold_503455.1 Length=1046 Score = 189 bits (102), Expect = 4e-47 Identities = 223/281 (79%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 124 GTTGATCTTTACAAGATTGAGCCATGTGATCTTCAAGAGTTATGCAAGATAGGAAACGAA 183 |||||||| ||||| | ||||| || ||| |||||||| | || ||||| || ||||| Sbjct 162 GTTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGTGTAAGATTGG-AACGAC 220 Query 184 G-AGCAGAGCGAATGGTACTTCTTTAGTCATAAAGACAAGAAGTATCCCACGGGAACTCG 242 | ||| | ||| |||||||||||||| ||||| |||||||||||||||||||| ||| | Sbjct 221 GCCGCAAAACGATTGGTACTTCTTTAGCCATAAGGACAAGAAGTATCCCACGGGGACTAG 280 Query 243 AACCAATAGAGCCACGAAAGCAGGATTTTGGAAAGCCACTGGAAGAGACAAGGCTAT-AT 301 ||| || ||||||| | | |||||||||||||| || ||| | ||||| | || || Sbjct 281 AACTAACCGAGCCACCACGGTGGGATTTTGGAAAGCTACGGGACGTGACAA-G--ATCAT 337 Query 302 ATATAAGACATAGT-CT--TATCGGTATGAGGAAAACACTTGTGTTTTACAAAGGAAGAG 358 ||||| | || || | ||||| ||| | ||||| || || || |||||||| ||| Sbjct 338 ATATACCA-ATGGTGATAGGATCGGGATGCGAAAAACGCTAGTCTTCTACAAAGGTCGAG 396 Query 359 CCCCAAATGGTCAGAAATCCGATTGGATCATGCACGAATAT 399 |||| ||||||||||||||||||||||||||||||||||| Sbjct 397 CCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATAT 437 > Ahg940784 jgi|Araly1|940784|scaffold_601328.1 Length=812 Score = 65.8 bits (35), Expect = 7e-10 Identities = 37/38 (97%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 25 CCTGGCTTCAGATTTCATCCTACTGATGAAGAACTTGT 62 ||||| |||||||||||||||||||||||||||||||| Sbjct 69 CCTGGATTCAGATTTCATCCTACTGATGAAGAACTTGT 106 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44222583720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5