BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62700.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1 1725 0.0
Ahg939264 jgi|Araly1|939264|scaffold_503455.1 189 4e-47
Ahg940784 jgi|Araly1|940784|scaffold_601328.1 65.8 7e-10
> Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1
Length=1209
Score = 1725 bits (934), Expect = 0.0
Identities = 1122/1208 (93%), Gaps = 32/1208 (3%)
Strand=Plus/Plus
Query 1 ATGAATTCGTTTTCACAAGTACCTCCTGGCTTCAGATTTCATCCTACTGATGAAGAACTT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTCGTTTTCACAAGTACCTCCGGGCTTCAGATTTCATCCTACTGATGAAGAACTT 60
Query 61 GTAGACTACTACTTGAGGAAAAAAGTTGCATCAAAGAGAATAGAAATCGATATCATCAAG 120
|| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 61 GTTGACTACTACTTGAGGAAAAAAGTAGCATCGAAGAGAATAGAAATCGATTTCATCAAT 120
Query 121 GATGTTGATCTTTACAAGATTGAGCCATGTGATCTTCAAGAGTTATGCAAGATAGGAAAC 180
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GACGTTGATCTTTACAAGATTGAGCCATGGGATCTTCAAGAGTTATGCAAGATAGGAAAC 180
Query 181 GAAGAGCAGAGCGAATGGTACTTCTTTAGTCATAAAGACAAGAAGTATCCCACGGGAACT 240
|||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 181 GAAGAGCAAAGCGAATGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCTACAGGAACT 240
Query 241 CGAACCAATAGAGCCACGAAAGCAGGATTTTGGAAAGCCACTGGAAGAGACAAGGCTATA 300
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 241 CGAACCAATAGAGCGACGAAAGCAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCTATA 300
Query 301 TATATAAGACATAGTCTTATCGGTATGAGGAAAACACTTGTGTTTTACAAAGGAAGAGCC 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TATATAAGACATAGTCTTATCGGTATGAGGAAGACACTTGTGTTTTACAAAGGAAGAGCC 360
Query 361 CCAAATGGTCAGAAATCCGATTGGATCATGCACGAATATCGCTTAGAAACAAGTGAAAAT 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 CCAAATGGACAGAAATCCGATTGGATCATGCACGAATATCGCTTAGAAACAAATGAAAAT 420
Query 421 GGAACCCCTCAGGAAGAAGGATGGGTAGTATGTAGGGTATTCAAGAAGAAATTGGCAGCG 480
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 421 GGAACTCCTCAGGAAGAAGGATGGGTGGTATGTAGGGTGTTCAAGAAGAAATTGGCAGCG 480
Query 481 ACAGTGAGGAAAATGGGAGATTACCATTCATCACCATCGCAGCATTGGTACGATGATCAG 540
|| ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 481 ACGGTGAGGAAAATGGGAGATTACAATTCATCACCAT--C-GCATTGGTACGATGATCAG 537
Query 541 CTCTCTTTTATGGCCTCCGAG-ATCATTTCTAGTTCTCCACGACAGTTTCTTCCCAATCA 599
||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 538 CTCTCTTTTATGGCCTCCGAGCTTGA-TTCTAGTTCTCCACGACAGTTTCTTCCCAATCA 596
Query 600 TCATTATAACCGCCACCATCACCAGCA---G-A--CATTGCCTTGTGGCCTCAATGC--- 650
|||||||||||||||||||||||| || | | |||| |||||||||||||||||
Sbjct 597 TCATTATAACCGCCACCATCACCATCACCAGCATACATTACCTTGTGGCCTCAATGCGTC 656
Query 651 ---A--TT---CA---A-CAACAACAAT--CC-TAACTTGCAATGCAAGCAAGAGCTCGA 695
| || || | ||||||||| || |||||||||||||||||||||||||||
Sbjct 657 TTCAGCTTATGCATTCAACAACAACAACAACCCTAACTTGCAATGCAAGCAAGAGCTCGA 716
Query 696 GTTACATTACAATCAAATGGTACAACATCAACAACAAAACCATCATCTTCGTGAATCTAT 755
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 717 GTTACATTACAATCACATGGTACAACATCAACAACAAAACCATCATCTGCGTGAATCTAT 776
Query 756 GTTTCTCCAGCTTCCTCAGCTCGAAAGCCCTACCAGTAATTGCAATTCTGACAACAACAA 815
||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 777 GTTCCTCCAGCTTCCTCAGCTCGAAAGCCCTACTAGTAATTGCAACTCTAACAACAACAA 836
Query 816 TAACACAAGAAATATTAGTAACTTGCAGAAATCATCAAATATATCTCATGAGGAACAATT 875
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 TAACACAAGAAATATTGGTAACTTGCAGAAATCATCAAATATCTCTCATGAGGAACAATT 896
Query 876 GCAACAAGGGAATCAAAGTTTCAGCTCTCTGTATTACGATCAAGGAGTAGAGCAAATGAC 935
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 897 GCAACAAGGGAATCAAAGTTTCAGCACTCTTTATTACGATCAAGGAGTAGAGCAAATGAC 956
Query 936 TACTGACTGGAGAGTTCTCGATAAATTTGTTGCTTCACAGCTTAGCAATGATGAAGAGGC 995
|||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 957 TACTGATTGGAGAGTTTTCGATAAATTTGTTGCTTCACAGCTTAGCAATGA--A-GAGGC 1013
Query 996 TGCAGCCGTGGTTTCTTCTTCTTCTCATCAAAACAACGTCAAGATTGACACGAGAAACAC 1055
|||||||| || |||| | ||||||||||| |||||||||||||||||||| |||||| |
Sbjct 1014 TGCAGCCGAGGCTTCTACCTCTTCTCATCACAACAACGTCAAGATTGACACAAGAAACCC 1073
Query 1056 GGGTTATCATGTGATAGATGAGGGAATAAATTTGCCGGAGAATGATTCTGAAAGGGTTGT 1115
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GGTTTATCAAGTGATAGATGAGGGAATAAATTTGCCGGAGAATGATTCTGAAAGGGTTGT 1133
Query 1116 TGAAATGGGAGAAGAGTATTCAAATGCTCATGCTGCTTCTACTTCTTCAAGTTGTCAGAT 1175
||||||| |||| |||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 1134 TGAAATGAGAGATGAGTATACAAATTCTCATGCTGCTTCTACTTCTTCGAGTTGTCAGAT 1193
Query 1176 TGATCTCT 1183
||||||||
Sbjct 1194 TGATCTCT 1201
> Ahg939264 jgi|Araly1|939264|scaffold_503455.1
Length=1046
Score = 189 bits (102), Expect = 4e-47
Identities = 223/281 (79%), Gaps = 10/281 (4%)
Strand=Plus/Plus
Query 124 GTTGATCTTTACAAGATTGAGCCATGTGATCTTCAAGAGTTATGCAAGATAGGAAACGAA 183
|||||||| ||||| | ||||| || ||| |||||||| | || ||||| || |||||
Sbjct 162 GTTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGTGTAAGATTGG-AACGAC 220
Query 184 G-AGCAGAGCGAATGGTACTTCTTTAGTCATAAAGACAAGAAGTATCCCACGGGAACTCG 242
| ||| | ||| |||||||||||||| ||||| |||||||||||||||||||| ||| |
Sbjct 221 GCCGCAAAACGATTGGTACTTCTTTAGCCATAAGGACAAGAAGTATCCCACGGGGACTAG 280
Query 243 AACCAATAGAGCCACGAAAGCAGGATTTTGGAAAGCCACTGGAAGAGACAAGGCTAT-AT 301
||| || ||||||| | | |||||||||||||| || ||| | ||||| | || ||
Sbjct 281 AACTAACCGAGCCACCACGGTGGGATTTTGGAAAGCTACGGGACGTGACAA-G--ATCAT 337
Query 302 ATATAAGACATAGT-CT--TATCGGTATGAGGAAAACACTTGTGTTTTACAAAGGAAGAG 358
||||| | || || | ||||| ||| | ||||| || || || |||||||| |||
Sbjct 338 ATATACCA-ATGGTGATAGGATCGGGATGCGAAAAACGCTAGTCTTCTACAAAGGTCGAG 396
Query 359 CCCCAAATGGTCAGAAATCCGATTGGATCATGCACGAATAT 399
|||| |||||||||||||||||||||||||||||||||||
Sbjct 397 CCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATAT 437
> Ahg940784 jgi|Araly1|940784|scaffold_601328.1
Length=812
Score = 65.8 bits (35), Expect = 7e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 25 CCTGGCTTCAGATTTCATCCTACTGATGAAGAACTTGT 62
||||| ||||||||||||||||||||||||||||||||
Sbjct 69 CCTGGATTCAGATTTCATCCTACTGATGAAGAACTTGT 106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5