BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62710.1
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315131 jgi|Araly1|315131|fgenesh1_pm.C_scaffold_2000164 1709 0.0
> Ahg315131 jgi|Araly1|315131|fgenesh1_pm.C_scaffold_2000164
Length=1605
Score = 1709 bits (925), Expect = 0.0
Identities = 1041/1097 (95%), Gaps = 8/1097 (1%)
Strand=Plus/Plus
Query 428 GGACTATACTGGTAGTAGCGTTACGGCTGCAAACTTCTACGCTGTACTCCTAGGCGACCA 487
||||||||| ||||||| |||||||||||| |||||||| || || || |||||||||||
Sbjct 513 GGACTATACCGGTAGTAACGTTACGGCTGCGAACTTCTATGCGGTGCTTCTAGGCGACCA 572
Query 488 GAAGGCTGTTAAAGGTGGAAGCGGTAAGGTCATCGCTAGCAAGCCCAACGATCACATTTT 547
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 573 GAAGGCTGTTAAAGGTGGAAGTGGTAAGGTCATCGCTAGCAAGCCTAACGATCACATTTT 632
Query 548 CGTATATTATGCGGATCATGGTGGTCCCGGAGTTCTTGGGATGCCAAATACGCCTCACAT 607
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 633 CGTATATTATGCAGATCATGGTGGTCCCGGAGTTCTTGGGATGCCAAACACGCCTCACAT 692
Query 608 ATATGCAG-CTGATTTTATTGAAACGCTTAAGAAGAAGCATGCTTCCGGAACATACAAAG 666
|||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 693 ATATGC-GACTGATTTTATTGAAACACTTAAGAAGAAGCATGCTTCCGGAACATACAAAG 751
Query 667 AGATGGTTATATACGTAGAAGCGTGTGAAAGTGGGAGTATTTTCGAAGGGATAATGCCAA 726
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 752 AGATGGTTATATACGTAGAAGCGTGTGAAAGCGGGAGTATTTTCGAAGGGATAATGCCAA 811
Query 727 AGGACTTGAACATTTACGTAACAACGGCTTCAAATGCACAAGAGAGTAGTTATGGAACAT 786
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 812 AGGACTTGAAGATTTACGTAACAACGGCTTCAAATGCGCAAGAGAGTAGTTACGGAACAT 871
Query 787 ATTGTCCTGGCATGAATCCGTCACCCCCATCTGAATATATCACTTGCTTAGGGGATTTAT 846
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 ATTGTCCCGGCATGAATCCGTCACCCCCATCTGAATATATCACTTGCTTAGGGGATTTAT 931
Query 847 ATAGTGTTGCTTGGATGGAAGATAGTGAGACTCACAATTTAAAGAAAGAGACCATAAAGC 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ATAGTGTTGCTTGGATGGAAGATAGTGAGACTCACAATTTAAAGAAAGAGACCATAAAGC 991
Query 907 AACAATACCACACGGTGAAGATGAGGACATCAAACTACAATACCTACTCAGGTGGCTCTC 966
|||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 992 AACAATACCAAACGGTGAAGATGCGGACATCAAACTACAATACCTATTCAGGTGGCTCTC 1051
Query 967 ATGTGATGGAATACGGTAACAATAGTATTAAGTCGGAGAAGCTTTATCTT-TACCAAGGG 1025
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1052 ATGTGATGGAATACGGTAACAATAGTATTAAGTCGGAGAAGCTTTAT-TTCTACCAAGGG 1110
Query 1026 TTTGATCCAGCCACCGTTAATCTCCCACTAAACGAATTACCGGTCAAGTCAAAAATAGGA 1085
|||||||||||||||||||||||||| ||||| |||||||| |||||||| || | |||
Sbjct 1111 TTTGATCCAGCCACCGTTAATCTCCCTCTAAAAAAATTACCGATCAAGTCACAAGTGGGA 1170
Query 1086 GTCGTTAACCAACGCGACGCGGACCTTCTCTTCCTTTGGCATATGTATCGGACATCGGAA 1145
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1171 GTCGTTAACCAACGCGACGCGGACCTTCTATTCCTTTGGCACATGTATCGGACATCGGAA 1230
Query 1146 GATGGGTCAAGGAAGAAGGATGACACATTGAAGGAATTAACTGAGACAACAAGGCATAGG 1205
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1231 GATGGGTCAAGGAAGAAGGATGACACATTGAAGGAATTAACTGAGACAACGAGGCATCGG 1290
Query 1206 AAACATTTAGATGCAAGCGTCGAATTGATAGCCACAATTTTGTTTGGTCCGACGATGAAT 1265
|| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1291 AAGCATTTAGATGCAAGCGTCGAATTGATAGGCACAATTTTGTTTGGTCCGACAATGAAT 1350
Query 1266 GTTCTTAACTTGGTTAGAGAACCCGGTTTGCCTTTGGTTGACGATTGGGAATGTCTTAAA 1325
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1351 GTTCTTAACTCGGTTAGAGAACCCGGTTTGCCTTTGGTCGACGATTGGGAATGTCTTAAA 1410
Query 1326 TCGATGGTACGTGTATTTGAAG-AGCATTGTGGATCACTAACGCAATATGGGATGAAACA 1384
||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 1411 TCGATGGTACGCGTATTTGAAACA-CATTGTGGATCACTAACGCAATACGGGATGAAACA 1469
Query 1385 TATGCGAGCGTTTGCAAACGTTTGTAACAACGGTGTGTCC-AAAGAGCTGATGGAGGAAG 1443
|||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||
Sbjct 1470 TATGCGAGCGTTTGCAAATGTTTGTAACAACGGTGTC-CCGAAAGAGCTGCTGGAGGAAG 1528
Query 1444 CTTCTACTGCGGCATGCGGTGGTTATAGTGAGGCTCGCTACACGGTGCATCCATCAATCT 1503
|||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1529 CTTCCGCTGCAGCATGCGGTGGTTATAATGAGGCTCGCTACACGTTGCATCCATCAATCG 1588
Query 1504 TAGGCTATAGCGCCTGA 1520
|||||||||||||||||
Sbjct 1589 TAGGCTATAGCGCCTGA 1605
Score = 551 bits (298), Expect = 7e-156
Identities = 352/378 (93%), Gaps = 4/378 (1%)
Strand=Plus/Plus
Query 60 ATGGCTAAGTCTTGCTATTTCAGACCAGCTCTTCTTCTTCTGTTAGTTCTTTTGGTTCAT 119
|||||||| |||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1 ATGGCTAATTCTTGCTATTTCAGACCAGCTCTTCTTCTTCTACTACTTCTCTTGGTTCGG 60
Query 120 GCCGAGTCACGCGGTCGGTTCGAGCCAAAGATTCTTATGCCGACAGAGGAAGCT-AACC- 177
|| |||||||| |||| ||||||||||||||||||| ||||||||||| || || ||||
Sbjct 61 GCAGAGTCACGAGGTCAGTTCGAGCCAAAGATTCTTTTGCCGACAGAGAAAACTAAACCG 120
Query 178 -CGGCTGACCAAGACGAAGATGGTGTCGGTACAAGATGGGCGGTTCTCGTCGCTGGTTCT 236
| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 121 ACAGCTGACCAAGACGAAGATGGTATCGGTACAAGATGGGCGGTTCTCGTCGCCGGTTCT 180
Query 237 TCTGGATATGGAAACTACAGACACCAGGCTGACGTGTGTCACGCATATCAAATACTAAGA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTGGATATGGAAACTACAGACACCAGGCTGACGTGTGTCACGCATATCAAATACTAAGA 240
Query 297 AAAGGAGGTTTAAAGGAAGAAAACATAGTCGTTTTGATGTATGATGATATCGCAAACCAC 356
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AAAGGAGGTTTAAAGGAAGAGAACATAGTAGTTTTGATGTATGATGATATCGCAAACCAC 300
Query 357 CCACTTAATCCTCGTCCGGGTACTCTCATCAACCATCCTGACGGTGACGATGTTTACGCC 416
|||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 301 CCACTTAATCCTCGTCCGGGTACTATCATCAATCATCCTGACGGCGACGATGTTTACGCC 360
Query 417 GGAGTCCCTAAGG-ACTA 433
|||||||||||| ||||
Sbjct 361 AGAGTCCCTAAGGTACTA 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5