BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62720.1
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475080 jgi|Araly1|475080|fgenesh2_kg.2__210__AT1G62720.1 2128 0.0
> Ahg475080 jgi|Araly1|475080|fgenesh2_kg.2__210__AT1G62720.1
Length=1510
Score = 2128 bits (1152), Expect = 0.0
Identities = 1397/1516 (92%), Gaps = 13/1516 (1%)
Strand=Plus/Plus
Query 1 ACAGATACATAGATTACGAATAAAACGAGGTTAAT-AATTCAAATGCGGAGATCGACCAC 59
||||||||| |||||||||| |||||||| ||||| || |||||||| |||||||| |||
Sbjct 1 ACAGATACAGAGATTACGAACAAAACGAGCTTAATCAAATCAAATGCAGAGATCGATCAC 60
Query 60 GATCTCAATTGCATCAAAAGCAAATAAATTTCTCAATCTGTGTCTTCTCCAGAAAGGTAA 119
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 61 GATCTCAATTGCATCAAAAGCAAAGAAATTTCTCAATCTGTGTCTTCTGGAGAAAGGTAA 120
Query 120 TCCTGTAATTGTTCCTTTCATTAGCCGTTTCTGGGGAAGAACTTTTTCTACTAAGAGATC 179
|| ||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 TCGTGTAACTGCTCCTTTCATTAGCCGTTTCTGGGGAAGAGCTTTTACTACTAAGAGATT 180
Query 180 GAGTATGAATTTAGAAGAAGAAATTGATTTGTTCTGTAAAATGATTCAATCTCGTCCTCT 239
||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GAGTATGAATTTAGACGAAGCAATTGATTTGTTCTGTAACATGATTCAATCTCGTCCTCT 240
Query 240 TCCTTCAATAGTTGATTTCAGTAAAGTATTGAGTAAAATCGCCAAATCGAAGAATTACGA 299
||||||||| ||||| ||||||||| | |||||||| ||||||||||| |||||||||||
Sbjct 241 TCCTTCAATTGTTGAATTCAGTAAATTGTTGAGTAATATCGCCAAATCAAAGAATTACGA 300
Query 300 TCTTGTGATCTCTCTGTTTCACCATATGGAAG-TTTGTGGAATTGGTCATGATCTTTATA 358
|||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||
Sbjct 301 TCTTGTGATCTCTCTGTTTCACAATATGG-AGATTTGTGGAATTGGGCATGATCTTTATA 359
Query 359 GTTACAACATTGTGATTAATTGTTTATGTCGATGCTCTCGATTTGTTATTGCTTTATCTG 418
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 CTTATAACATTGTGATTAATTGTTTGTGTCGATGCTCTCGATTTGTTATTGCTTTATCTG 419
Query 419 TTGTTGGGAAGATGATGAAGTTTGGTTACGAGCCTGATGTTGTCACGGTTAGTTCTTTGA 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 TTGTTGGGAAGATGATGAAGTTTGGTTACGAGCCCGATGTTGTCACGGTTAGTTCTTTGA 479
Query 479 TTAATGGATTTTGTCAAGGGAATAGAGTTTTTGATGCTATAGATTTGGTTAGTAAAATGG 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 TTAATGGATTTTGTCAAGGGAATAGAGTTTTTGATGCTGTAGATTTGGTTAGTAAAATGG 539
Query 539 AGGAAATGGGATTTAGACCAGATGTTGTTATCTACAACACGATCATCGACGGTTCTTGTA 598
|||||||||||| || || |||||||||||||||||| |||||||||||||||| |||||
Sbjct 540 AGGAAATGGGATGTAAACTAGATGTTGTTATCTACAATACGATCATCGACGGTTTTTGTA 599
Query 599 AGATCGGGTTGGTGAATGACGCGGTGGAGCTGTTTGATCGGATGGAAAGAGATGGGGTTA 658
| | ||| ||||||||| ||||| ||| | |||| || ||||||||||||||||||||||
Sbjct 600 AAACCGGATTGGTGAATAACGCGTTGGTGTTGTTCGAGCGGATGGAAAGAGATGGGGTTA 659
Query 659 GAGCTGATGCTGTTACTTATAACTCTCTTGTGGCCGGTCTTTGTTGTTCTGGTAGATGGA 718
|||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 660 GAGCGGATACTGTTACTTATAACTCTCTTGTGACCGGTCTTTGTTGTTCCGGTAGAAGGA 719
Query 719 GTGATGCAGCTCGGCTAATGAGAGATATGGTAATGAGGGATATTGTTCCTAATGTCA-TT 777
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 720 GTGATGCTGCTCGGCTTATGAGAGATATGGTTATGAGGGATATTGTTCCTAATGT-AGTT 778
Query 778 ACTTTCACTGCGGTGATCGATGTGTTTGTGAAAGAAGGGAAGTTTTCGGAGGCGATGAAG 837
|||||||||||| ||||| ||| |||||||| ||||||||| |||| |||||||| ||||
Sbjct 779 ACTTTCACTGCGTTGATCAATGCGTTTGTGAGAGAAGGGAAATTTTTGGAGGCGAAGAAG 838
Query 838 TTGTACGAGGAGATGACACGAAGGTGTGTAGATCCGGATGTTTTCACTTACAATTCGTTG 897
|| ||| ||||||||| ||||||||| || |||||||||||||||||||||||||| ||
Sbjct 839 TTTTACAAGGAGATGATTCGAAGGTGTATAAATCCGGATGTTTTCACTTACAATTCGATG 898
Query 898 ATCAACGGTCTTTGTATGCACGGTCGGGTAGATGAGGCCAAACAAATGCTTGATTTGATG 957
||| | ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 899 ATCCATGGTCTTTGTATGCACGGTCAGGTAGATGAGGCCAAACAAATTCTTGATTTGATG 958
Query 958 GTAACTAAGGGTTGTCTCCCCGATGTAGTGACTTATAATACTCTCATTAACGGGTTTTGC 1017
||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 959 GTAACAAAGGGTTGTTTCCCCGATGTTGTGACTTATAATACTCTCATTAACGGGTTTTGC 1018
Query 1018 AAGTCTAAGAGGGTTGATGAAGGAACGAAACTCTTCCGCGAGATGGCTCAAAGAGGATTA 1077
||| ||||||| || |||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct 1019 AAGACTAAGAGAGTAGATGAAGGGACGAAACTCGTCCGCGAGATGTCTCAAAGAGGATTA 1078
Query 1078 GTTGGT-GACACTA-TCACATACAACACTATAATCCAGGGCTATTTTCAAGCGGGTAGAC 1135
|||| | ||||| | |||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 GTTG-TCGACAC-AGTCACTTTCAACACTATTATCCAGGGCTATTTTCAAGCGGGTAGAC 1136
Query 1136 CAGATGCGGCGCAAGAAATTTTCAGTCGGATGGATTCTCGTCCCAATATTAGGACGTACA 1195
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1137 CAGATGCCGCGCAAGAAATTTTCAGTCGGATGGATTCTCGTCCCAATATTAGGACCTACA 1196
Query 1196 GCATTTTGTTGTATGGGCTTTGTA-TGAACTGGAGGGTAGAGAAAGCATTGGTGTTATTC 1254
|||||||||| ||||||||||||| | ||||||||||||||||||||| ||||| |||||
Sbjct 1197 GCATTTTGTTATATGGGCTTTGTAAT-AACTGGAGGGTAGAGAAAGCACTGGTGCTATTC 1255
Query 1255 GAGAATATGCAAAAGAGTGAAATAGAACTTGATATTACTACTTATAATATCGTCATTCAC 1314
|||| ||||||||||| |||||| || ||||||||||| || ||||||||||||||||||
Sbjct 1256 GAGAGTATGCAAAAGATTGAAATGGAGCTTGATATTACGACATATAATATCGTCATTCAC 1315
Query 1315 GGGATGTGCAAGATTGGTAATGTTGAAGATGCGTGGGACTTGTTTCGTAGCCTTTC-TTG 1373
||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||
Sbjct 1316 GGGATGTGCAAGATTGGTAATGTCGAAGATGCATGGGACTTGTTTTGTAGCCTTTCCTT- 1374
Query 1374 CAAAGGACTTAAGCCTGATGTTGTGTCCTACACTACGATGATCTCAGGCTTTTGTAGGAA 1433
|||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||||
Sbjct 1375 CAAAGGACTTGAGCCTGATGTTGTAACCTACACTACAATGATCTCAGGATTTTGTAGGAA 1434
Query 1434 ACGCCAATGGGATAAATCAGATTTGTTGTACAGAAAAATGCAAGAAGATGGGCTTCTTCC 1493
||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1435 ACGCCTATGGGATAAAGCAGATTTTTTGTACAGAAAAATGCAAGAAGATGGGCTTCTTCC 1494
Query 1494 ATTATAACATATGAAA 1509
|||||||||||||||
Sbjct 1495 GTTATAACATATGAAA 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5