BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62730.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475079 jgi|Araly1|475079|fgenesh2_kg.2__209__AT1G62730.1 1480 0.0
> Ahg475079 jgi|Araly1|475079|fgenesh2_kg.2__209__AT1G62730.1
Length=996
Score = 1480 bits (801), Expect = 0.0
Identities = 887/929 (95%), Gaps = 3/929 (0%)
Strand=Plus/Plus
Query 192 ATGAATGGAGGAGGCTCGAGTAGTTTGCGTTCAGCATTGTCCTATTGTGTGCAGCAAGTA 251
||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||
Sbjct 1 ATGAATGGAGGAGGCTC---TAGTTTACGTTCAGCATTGTCCTATTGTGTACAACAAGTA 57
Query 252 CGAAACTATGACTATCATCACTACCTCTGTCTCCTTGAACTCCCAACTGAGATGCGTAAA 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CGAAACTATGACTATCATCACTACCTCTGTCTCCTTGAACTCCCAACTGAGATGCGTAAA 117
Query 312 GCAGCATTTGCTCTCCGGGCTTTTAATGTAGAAACCGCAAGAGCCATGGATGTTGCATCT 371
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 118 GCCGCATTTGCTCTCCGGGCTTTCAATGTAGAAACTGCAAGAGCCATGGATGTTGCATCT 177
Query 372 GATCCCAAAATCGGCTTGATGCGGTTACTTTGGTGGCAAGAAGCAATTGACAAACTCTAC 431
||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 178 GATCCCAAAATTGGCTTGATGCGGCTGCTTTGGTGGCAAGAAGCAATTGACAAACTCTAC 237
Query 432 ACCAAAAAGCCCATAAACCATCCAGCTGCACAAGCTCTGTCTTGGGCAATATCAGAACAT 491
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 ACCAAAAAACCCATAAACCATCCAGCTGCACAAGCTCTGTCTTGGGCAATATCAGAGCAT 297
Query 492 AACATCAGTAAACCTTGGCTAAAACGCTCAGTTGACGCTAGAATCCGAGATGCCCAAAGA 551
| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 298 AGCATCAGTAAACCTTGGCTAAAGCGCTCGGTTGAAGCTAGAATCCGAGATGCGCAAAGA 357
Query 552 GAAGTAGACGATATACCAGAGAGCATTGCGGAGCTAGAGAAATACGCAGAAGACACAGTT 611
||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||
Sbjct 358 GAAGTAGACGATATACCAGAGAGTATCGAGGAGCTAGAGAAATACGCAGAAGACACGGTT 417
Query 612 TCCACTCTTCTGTACAATACACTCCAAGCAGGCGGAATTAGTTCAACAACAGCTGATCAT 671
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 418 TCCACTCTTCTGTACAATACACTCCAAGCTGGCGGAATTAGTTCAACAACAGCGGATCAC 477
Query 672 GCAGCTTCACACATTGGTAAAGCCAGTGGTCTTGTCTTGCTGCTTAAATCATTACCGTAC 731
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 478 GCAGCTTCACACATTGGTAAAGCCAGTGGTCTTGTCTTGCTACTGAAATCATTACCGTAC 537
Query 732 CACTGTACCAGAAACCGTCACCAGAGTTACATCCCTGCAGATCTCGCTGAGAAGCACGGG 791
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 CATTGTACCAGAAACCGTCACCAGAGTTACATCCCTGCAGATCTCGCAGAGAAGCACGGG 597
Query 792 TTGCTCGTGAAACAAGGTGGACGATTAGAAATTCTTCTGGATAACGATTCAAGAGAAGGA 851
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 598 TTGCTCGTAAAACAAGGTGGACGATTAGAAATTCTTCTGGATAACAATTCAAGAGAAGGA 657
Query 852 CTAAGCAATGTCGTGTTTGAGATTGCATCTGTTGCCAATGCACATCTCCTGAAAGCCCGT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTAAGCAATGTCGTGTTTGAGATTGCATCTGTTGCCAATGCACATCTCCTGAAAGCCCGT 717
Query 912 GAACTGGCGGGAAAGGTTCCTGCAGAAGCTAAACCGGTACTGCTTCATTCTGTGCCGGTA 971
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 718 GAACTGGCGGGAAAGGTTCCTGCAGAAGCTAAACCCGTTCTGCTTCATTCCGTGCCGGTA 777
Query 972 CAAGTTCTTCTGGATTCGTTAAATAAAGTACAATTCGATGTGTTTGATCCCAGGATTCAA 1031
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 CAAGTTCTTCTGGATTCGTTAAATAAAGTACAATTCGATGTGTTTGATCCGAGGATTCAA 837
Query 1032 AGAGGAGTTCTTGGTGTTCCTCCACTCTTGTTTCAGTTTAAACTCAAGTGGTATTCATGG 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGAGGAGTTCTTGGTGTTCCTCCACTCTTGTTTCAGTTTAAACTCAAGTGGTATTCATGG 897
Query 1092 AGAGCAATGTTTTGAAAACTTGTCTTTAT 1120
||||| ||||| ||| |||| ||||||
Sbjct 898 AGAGCTATGTTCTGATTTCTTGCCTTTAT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5