BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62760.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924719 jgi|Araly1|924719|scaffold_200280.1 745 0.0
> Ahg924719 jgi|Araly1|924719|scaffold_200280.1
Length=569
Score = 745 bits (403), Expect = 0.0
Identities = 474/509 (93%), Gaps = 2/509 (0%)
Strand=Plus/Plus
Query 432 CTTAGATTACATCAAAACATCATGTAACATTACACTCTACAAAACCATTTGCTACAACTC 491
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 42 CTTAGATTACATCAAAACATCATGTAACCTCACACTCTACAAAACCCTTTGCTACAACTC 101
Query 492 TCTATCTCCTTACGCCTCAACAATCCGTTCCAACCCTCAAAAACTCGCTGTCATCGCCCT 551
||||| |||||||||||||||| ||| |||||||||||| |||||||| |||| ||||||
Sbjct 102 TCTATATCCTTACGCCTCAACAGTCCATTCCAACCCTCACAAACTCGCCGTCACCGCCCT 161
Query 552 CAATCTCACCCTCTCATCCGCCAAATCTGCCTCCAAATTCGTCAAAAACATATCTCACGG 611
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 162 CAATCTCACCCTCTCCTCCGCCAAATCCGCCTCCAAATTCGTCAAAAACATATCTCACCG 221
Query 612 AGGTGGTCTAACACGTTTGGAAGTAGTTGCGGTTGCTGATTGCGTTGAAGAGATTGGAGA 671
||| |||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 222 AGGCGGTCTAACACTTTTGGAAGCGGTTGCGGTTGCTGATTGCGTGGAAGAGATTGGAGA 281
Query 672 CTCGGTGACT-TCGCTTCAAGATTCGATAAGGGAATTGGATTCTATCAACTATAAAGATA 730
||| |||| | |||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 282 CTCCGTGA-TATCGCTTCAAGATTCCATAAGAGAGTTGGATTCTATCAACTATAAAGATA 340
Query 731 GTGCAAAGTTTGAGATGGTTATGTCGGATGTTGAAACATGGGTTAGTGCTGCTCTCACGA 790
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 341 GTGCAAAGTTTGAGATGGTTATGTCGGATGTTGAGACATGGGTTAGTGCTGCTCTCACGG 400
Query 791 ATGATGACACATGTATGGATGGTTTCAGTCTAGTTAAAACGGCCGTGAAAGATTTGGTTC 850
||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 401 ATGATGAAACATGTATGGATGGTTTCAGTCGAGTCAAAACGGCCGTGAAAGATTTGGTTC 460
Query 851 GACGACATGTTGTTGAGGTAGCTCGGCTTACTAGCAACGCGCTTGCTCTCATTAATATGT 910
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 461 GGCGACATGTTGTTGAGGTAGCTCGGCTGACTAGCAACGCGCTTGCTCTTATTAATATGT 520
Query 911 ACGCCTCTACGCAAGAAAACTTTTCTTAA 939
|||||||||| | ||||||||||| |||
Sbjct 521 TCGCCTCTACGGAGGAAAACTTTTCATAA 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5