BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62770.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475076 jgi|Araly1|475076|fgenesh2_kg.2__206__AT1G62770.1 1195 0.0
> Ahg475076 jgi|Araly1|475076|fgenesh2_kg.2__206__AT1G62770.1
Length=789
Score = 1195 bits (647), Expect = 0.0
Identities = 745/792 (94%), Gaps = 7/792 (1%)
Strand=Plus/Plus
Query 55 ATGGAGC-T--TAAAAATACAATCTTTCTAGTCATACTTCTATCAATAACCATTCTCCAA 111
||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGAGCTTAATAAAAATACAATCTTTCTAGTCCTACTTCTATCAATAACCATTCTCCAA 60
Query 112 TCTTCATCTGCAACCCCAAACCGGTCGGAATCAGACCAGTTTATTGTGTCTTCATGCCAA 171
|||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct 61 TCTTCATCTGCAACCCCAAACCGGTCGGAACCAGACCGGTTCATTGTGTCTTCATGCCAA 120
Query 172 ACCACCCAATATCCATCACTATGCGTGCACACACTCTCTGCTTACGCCACCAAGATCCGC 231
|||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACCACCCAATATCCATTAGTTTGCGTGCATACACTCTCTGCTTACGCCACCAAGATCCGC 180
Query 232 CACAACAATGACCAAGATCTCGCCCAGACTGCTCTCATCATCAGCTTGGCTCGAGCCAAA 291
|||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 181 CACAACAACGACCAAGATCTCGCCCAAACCGCTCTCACCATCAGCTTGGCTCGAGCCAAA 240
Query 292 TCCGTTACTATCTTCGTCGCCAAACTAACCAAAGAGACACCAAAATTTAAACGTAGGGAA 351
|||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||| |||
Sbjct 241 TCCGTTTCTATCTTCGTCGCCAAACTAACCAAAGTGACACCAGGATTAAAACGTAGAGAA 300
Query 352 TATCTAGCAATCAAAGATTGCATCGAAGTGCTAGGCAATAGCGTGGACCGGTTAGCTCAA 411
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATCTAGCAATTAAAGATTGCATCGAAGTGCTAGGCAATAGCGTGGACCGGTTAGCTCAA 360
Query 412 TCGGTTAAGGAACTTGCTCGAGCTGGTCATGCTGTGGCTAGTGAGGACTTCATGTGGAAA 471
|||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCGGTTAAAGAACTGGGTCGAGCTGGTCATGCTGTGGCTAGTGAGGACTTCATGTGGAAG 420
Query 472 ATGAGTAACGTTCAAACATGGGTCAGTGCCGCTTTGACGGACGAGACAACGTGTCTAGAT 531
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 421 ATGAGTAACGTTCAAACATGGGTCAGTGCCGCTTTAACCGATGAGACAACGTGTCTAGAT 480
Query 532 GGATTCTCAGAACGAGCCATGGGAGGCAAAGTCAAAAGACTGATTCGGTATAAGGTGGTT 591
|||||||| ||||||||||||||||||||||| || || |||||||||| || |||||||
Sbjct 481 GGATTCTCGGAACGAGCCATGGGAGGCAAAGTGAAGAGGCTGATTCGGTTTAGGGTGGTT 540
Query 592 CACGTGGCTCAAGTCACTAGCAATGCTCTTGCTTTGGTTAATCAGTTTGCAGAGAAGCGA 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 CACGTGGCTCAAGTCACTAGCAATGCTCTTGCTTTGGTTAATCAGTTTGCAGAGAAACGA 600
Query 652 AGTGTGAAGTTTCCTTAAATGGACTTAAATGTGAAAATTTTGGCTTGTAAGTGAGAGTTT 711
||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 601 AGTGTGACGTTTCCTTAAATGGACTTAAATGTGAAAATTTTGGCTTGTATGTGAAAGTTT 660
Query 712 GAATCTAAACTTCAATTAGTTGTGTAAATTGTTATC-tttttttttCGTCGGTCGGAAAG 770
||||||||||||||| | ||||||||||||||||| ||||||||| |||||| ||||||
Sbjct 661 GAATCTAAACTTCAAA-A-TTGTGTAAATTGTTATCCTTTTTTTTT-GTCGGTTGGAAAG 717
Query 771 TAAACTCAAGATTGTGTAACAATCTTTGTTGTGTCCTGTATAATATTGTATTTTAAGATA 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAAACTCAAGATTGTGTAACAATCTTTGTTGTGTCCTGTATAATATTGTATTTTAAGATA 777
Query 831 ATGATATATAGT 842
| ||||||||||
Sbjct 778 AAGATATATAGT 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5