BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62780.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475075 jgi|Araly1|475075|fgenesh2_kg.2__205__AT1G62780.1 1387 0.0
> Ahg475075 jgi|Araly1|475075|fgenesh2_kg.2__205__AT1G62780.1
Length=901
Score = 1387 bits (751), Expect = 0.0
Identities = 858/909 (94%), Gaps = 10/909 (1%)
Strand=Plus/Plus
Query 1 AAAAAAGCAGAGCTCACACTTAGaaaacaaaaaacaaaaaTGGCTACGCTTTCGTTTGGA 60
||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |||
Sbjct 1 AAAAAAGCAGAGCTCACACTTAG-AAA-AAAAAATTCTAATGGCTACGCTTTCGTTCGGA 58
Query 61 ATCGCCGCCGCTGCAACCACCGTCCGTACGATTCCGAGATTTAATTCACGGAGGAGCAAA 120
||||||| | | ||||||||||||||||| || |||| ||||||| ||||||||||||||
Sbjct 59 ATCGCCG-C-C-GCAACCACCGTCCGTACAATACCGAAATTTAATACACGGAGGAGCAAA 115
Query 121 ATCACATGCGAATGGGATCCGAAAGGTGTGTTGGGTCCGGCTCAAACTGGTCATATAGCT 180
||| | |||||||||||||||||||||||||| |||||| | |||||||||||||| |||
Sbjct 116 ATCTCCTGCGAATGGGATCCGAAAGGTGTGTTAGGTCCGCCGCAAACTGGTCATATCGCT 175
Query 181 CGGCTTGAGTTTAAGCGTCGGCTAGAGAGAGATTCAGAGGCAAGAGAAGCTTTTCAGAAA 240
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AGGCTTGAGTTTAAACGTCGGCTAGAGAGAGATTCAGAGGCAAGAGAAGCTTTTCAGAAA 235
Query 241 CAACTTCGTGAAGAGAAAGAGCGTCGTCAAGCTCTTAGACAATCTAGAGTTGTACCGGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CAACTTCGTGAAGAGAAAGAGCGTCGTCAAGCTCTTAGACAATCTAGAGTTGTACCGGAT 295
Query 301 ACTGCTGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTATGAG 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 296 ACTGCGGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTACGAG 355
Query 361 ATCGCTAGGCTTAGAGGAAGGTTAAACGACGAATTCTTTGCGCAGATACGACTTGAAATC 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATCGCTAGGCTTCGAGGAAGGTTAAACGACGAATTCTTTGCGCAGATACGACTTGAAATC 415
Query 421 GGACAGATTCGATTTGCTGTTACTAAGACTGCGGATATTGAAGATAGATTGATTGAGCTT 480
|| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 416 GGGCAGATTCGGTTTGCTGTTACTAAGACTGCGGAAAGTGAAGATAGATTGATTGAGCTT 475
Query 481 GAAACACTTCAAAAAGCTTTAGAAGAAGGAATAGAGGCTTATGACAAAATGCAAAATGAG 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 476 GAAACACTTCAAAAAGCTTTAGAAGAGGGAATAGAGGCTTATGACAAAATGCAAAATGAG 535
Query 541 CTTATGACGGCTACAAATAGCTTAACCAA-ACTCTTAACCTCAACCGATATAAAAACCAC 599
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 536 CTTATGACGGCTACAAATAGCTTAACCAAGA-TCTTAACCTCAACCGATATAAAAACCAC 594
Query 600 ATTGTTGGATATGGTGGAGAAAAACCAAATCAACAGATCTTTGTTGGCACTTCTCGACGA 659
||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 595 ATTATTGGATATGGTGGAGAAAAACGAAATCAACCGATCTTTGTTGGCACTTCTCGACGA 654
Query 660 AAACATAGCCAATGCATACAAAGGAAACCAGAAAGAAGCAGGAGATTACATGGAGAAGAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AAACATAGCCAATGCATACAAAGGAAACCAGAAAGAAGCAGGAGATTACATGGAGAAGAT 714
Query 720 ACGCTCTTCAGTTCTTAAGTATTTGACAGTGTAGGATCATATGAGTCTTCGAAAGATTTC 779
||| ||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 715 ACGTTCTTCGGTTCTAAAGTACTTGACAGTGTAGGATCATACGAGTCTTCGAAAGATTTC 774
Query 780 TCAAGCTTTTGAATGTTTTCTATTATCGGGGAAAATTGTatttatatttttgttt-gttg 838
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 775 TCAAGCTTTTGAATGTTTTCTATTATCGGGTAAAAATGTATTTATATTTTTGTTTTGTTG 834
Query 839 agtaaaatgtattttctttttttccgaacgatgtttatatttttAGGGTCATTTCAGATC 898
|||||||||||||| |||| || |||||||||| |||||| |||| |||| |||||||||
Sbjct 835 AGTAAAATGTATTT-CTTTCTT-CCGAACGATGATTATATCTTTAAGGTCGTTTCAGATC 892
Query 899 TTCAAGTAA 907
| |||||||
Sbjct 893 TCCAAGTAA 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5