BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62790.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475074 jgi|Araly1|475074|fgenesh2_kg.2__204__AT1G62790.1 734 0.0
> Ahg475074 jgi|Araly1|475074|fgenesh2_kg.2__204__AT1G62790.1
Length=655
Score = 734 bits (397), Expect = 0.0
Identities = 528/586 (90%), Gaps = 29/586 (5%)
Strand=Plus/Plus
Query 20 aaaagaaaaaaagcaaagagagaggaaaag-aaaaaa-aaTGACGAAGACGATGATGATC 77
||||| |||||||| ||||||| |||| |||||| || || |||||||||||||||
Sbjct 4 AAAAG-AAAAAAGC--TTAGAGAGGTAAAGAAAAAAAGAAAGATGAAGACGATGATGATG 60
Query 78 TTTGCGGCGGCGATGACGGTGATGGCTTTGCTTTTGGTTCCGACTATTGAAGCACAAACT 137
|| ||||||||||||||||||||||||||| ||| ||||||| | |||||||||| ||
Sbjct 61 TTCGCGGCGGCGATGACGGTGATGGCTTTGGTTTCGGTTCCGGCGGTTGAAGCACAGACA 120
Query 138 GAGTGCGTGAGCAAGCTAGTCCCTTGCTTCAACGACCTGAACACGACAACAACGCCGGTG 197
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGTGCGTGAGCAAACTAGTCCCTTGCTTCAACGACCTGAACACGACAACAACGCCGGTT 180
Query 198 AAAGAATGTTGCGACTCGATTAAAGAAGCGGTGGAGAAGGAACTTACATGTCTCTGTACA 257
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AAAGAATGTTGCGACTCGATAAAAGAAGCGGTGGAGAAGGAACTTACATGTCTATGTACA 240
Query 258 ATCTACACCAGTCCAGGTTTGCTCGCTCAGTTCAACGTCACCACTGAGAAAGCTCTCGGT 317
|||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 241 ATCTACACCACTCCTGGTTTGCTCTCTCAGTTCAACGTCACCACTGATAAAGCTCTCGGT 300
Query 318 CTTAGCCGTCGTTGCAACGTCACCACTGATCTCTCCGCTTGTACCGCTAAAGGAGCTCCA 377
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CTTAGCCGTCGATGCAACGTCACCACTGATCTCTCTGCTTGTACCGCTAAAGGAGCTCCA 360
Query 378 TCGCCAAAAGCTTCTTTACCTCCTCCAGCTCCAGCAGGGAATACCAAAAAAGACGCCGGA 437
||||||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct 361 TCGCCAAAAGCTTCTTTACCTCCTCCAGC-C--G--GG-AATACCAAAAAAGACGCCGGA 414
Query 438 GCTGGGAACAAGCTCGCCGGTTATGGAGTCACCACCGTGATCTTGTCTTTGATCTCATCC 497
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 415 GCTGGGAACAAGCTCGCCGGTTATGGAGCCACCACCTTGATCTTGTCTTTGATCTCATCC 474
Query 498 ATCTTCTTCTGAATTCCTTTACC---------CGGTTTTATTATTATTAGCTCAATAA-- 546
||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 475 ATCTTCTTCTGAAATCCTTAACCGGATTTATACGGTTTTATTATTATTAGCTCAATAATT 534
Query 547 -A-----TTCTCGAGATTTGTTTGCTTTTGGCTTAACTTATTTAAT 586
| || |||||||||||||||||| |||||||||||||||||
Sbjct 535 CACGAGATTTTCGAGATTTGTTTGCTTT-GGCTTAACTTATTTAAT 579
Score = 113 bits (61), Expect = 2e-24
Identities = 72/77 (94%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 622 TGTTATGTATTATCATTGATTCATTATTGAGTCCCATGTTAGTATATTTACCGGTTATAA 681
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 580 TGTTATGTTTTATCATTGATTCATCATTGAGTCCCATGTTAGTATATTTACCGGTT-TAA 638
Query 682 TC-GGACTCTATCATTT 697
| ||||||||||||||
Sbjct 639 ACCGGACTCTATCATTT 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5