BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62790.1 Length=771 Score E Sequences producing significant alignments: (Bits) Value Ahg475074 jgi|Araly1|475074|fgenesh2_kg.2__204__AT1G62790.1 734 0.0 > Ahg475074 jgi|Araly1|475074|fgenesh2_kg.2__204__AT1G62790.1 Length=655 Score = 734 bits (397), Expect = 0.0 Identities = 528/586 (90%), Gaps = 29/586 (5%) Strand=Plus/Plus Query 20 aaaagaaaaaaagcaaagagagaggaaaag-aaaaaa-aaTGACGAAGACGATGATGATC 77 ||||| |||||||| ||||||| |||| |||||| || || ||||||||||||||| Sbjct 4 AAAAG-AAAAAAGC--TTAGAGAGGTAAAGAAAAAAAGAAAGATGAAGACGATGATGATG 60 Query 78 TTTGCGGCGGCGATGACGGTGATGGCTTTGCTTTTGGTTCCGACTATTGAAGCACAAACT 137 || ||||||||||||||||||||||||||| ||| ||||||| | |||||||||| || Sbjct 61 TTCGCGGCGGCGATGACGGTGATGGCTTTGGTTTCGGTTCCGGCGGTTGAAGCACAGACA 120 Query 138 GAGTGCGTGAGCAAGCTAGTCCCTTGCTTCAACGACCTGAACACGACAACAACGCCGGTG 197 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAGTGCGTGAGCAAACTAGTCCCTTGCTTCAACGACCTGAACACGACAACAACGCCGGTT 180 Query 198 AAAGAATGTTGCGACTCGATTAAAGAAGCGGTGGAGAAGGAACTTACATGTCTCTGTACA 257 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 181 AAAGAATGTTGCGACTCGATAAAAGAAGCGGTGGAGAAGGAACTTACATGTCTATGTACA 240 Query 258 ATCTACACCAGTCCAGGTTTGCTCGCTCAGTTCAACGTCACCACTGAGAAAGCTCTCGGT 317 |||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 241 ATCTACACCACTCCTGGTTTGCTCTCTCAGTTCAACGTCACCACTGATAAAGCTCTCGGT 300 Query 318 CTTAGCCGTCGTTGCAACGTCACCACTGATCTCTCCGCTTGTACCGCTAAAGGAGCTCCA 377 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 CTTAGCCGTCGATGCAACGTCACCACTGATCTCTCTGCTTGTACCGCTAAAGGAGCTCCA 360 Query 378 TCGCCAAAAGCTTCTTTACCTCCTCCAGCTCCAGCAGGGAATACCAAAAAAGACGCCGGA 437 ||||||||||||||||||||||||||||| | | || ||||||||||||||||||||| Sbjct 361 TCGCCAAAAGCTTCTTTACCTCCTCCAGC-C--G--GG-AATACCAAAAAAGACGCCGGA 414 Query 438 GCTGGGAACAAGCTCGCCGGTTATGGAGTCACCACCGTGATCTTGTCTTTGATCTCATCC 497 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 415 GCTGGGAACAAGCTCGCCGGTTATGGAGCCACCACCTTGATCTTGTCTTTGATCTCATCC 474 Query 498 ATCTTCTTCTGAATTCCTTTACC---------CGGTTTTATTATTATTAGCTCAATAA-- 546 ||||||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct 475 ATCTTCTTCTGAAATCCTTAACCGGATTTATACGGTTTTATTATTATTAGCTCAATAATT 534 Query 547 -A-----TTCTCGAGATTTGTTTGCTTTTGGCTTAACTTATTTAAT 586 | || |||||||||||||||||| ||||||||||||||||| Sbjct 535 CACGAGATTTTCGAGATTTGTTTGCTTT-GGCTTAACTTATTTAAT 579 Score = 113 bits (61), Expect = 2e-24 Identities = 72/77 (94%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 622 TGTTATGTATTATCATTGATTCATTATTGAGTCCCATGTTAGTATATTTACCGGTTATAA 681 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 580 TGTTATGTTTTATCATTGATTCATCATTGAGTCCCATGTTAGTATATTTACCGGTT-TAA 638 Query 682 TC-GGACTCTATCATTT 697 | |||||||||||||| Sbjct 639 ACCGGACTCTATCATTT 655 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28439696082 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5