BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62800.2
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475071 jgi|Araly1|475071|fgenesh2_kg.2__201__AT1G62800.2 2158 0.0
Ahg941505 jgi|Araly1|941505|scaffold_602049.1 1044 0.0
> Ahg475071 jgi|Araly1|475071|fgenesh2_kg.2__201__AT1G62800.2
Length=1402
Score = 2158 bits (1168), Expect = 0.0
Identities = 1285/1341 (96%), Gaps = 9/1341 (1%)
Strand=Plus/Plus
Query 24 TTTCAACTGATTCAATCAATTCTCATGAATTCCATCTTGTCAAGCGTCCTTCCTGCTCCC 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCAACTGATTCAATCAATTCTCATGAATTCCATCTTGTCAAGCGTCCTTCCTGCTCCC 60
Query 84 GAAGATCCTGTTCTCAGTGTAATTTTTGCTTGTAGAGATGATCCTAGTCCGGTTAAGTTG 143
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AAAGATCCTGTTCTCAGTGTAATTTTTGCTTGTAGAGATGATCCTAGTCCGGTCAAGTTG 120
Query 144 AATTTGAGCGCAGGTACCTATCGAACTGAGGAAGGAAAGCCTCTTGTTCTTGATGTTGTG 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATTTGAGCGCAGGTACCTATCGAACTGAGGAAGGAAAGCCTCTTGTTCTTGATGTTGTG 180
Query 204 AGAAGAGCAGAGCAACAGTTAGCCAACGACCTGTCTAGGGACAAGGAATATCTTCCCCTC 263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAAGAGCAGAGCAACAGTTAGCCAACGACCTGTCTAGGGACAAGGAATATCTTCCCCTT 240
Query 264 AATGGACTTCCTGAATTTAATAAATTAAGTACCAAGCTCATCTTAGGTGATGATAGTCCT 323
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 AATGGACTTCCTGAATTCAATAAATTAAGTACCAAGCTTATCTTAGGTGATGATAGTCCC 300
Query 324 GCATTGAAAGAGAATAGAGTTGTTACAACCCAATGTTTGTCTGGTACTGGTTCTTTGAGA 383
||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 301 GCAGTGAAAGAGAATAGAGTTGTTACAATCCAGTGTTTGTCTGGTACTGGTTCTTTGAGA 360
Query 384 GTTGGAGCTGAGTTTCTAGCAACACACAACAAAGAAAGTGTCATTTTCGTTCCAAACCCA 443
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 361 GTTGGAGCTGAGTTTCTAGCAACACACAACAAAGAACGTGTCATTTTCGTTCCAGACCCA 420
Query 444 ACGTGGGGGAACCATCCCCGTATTTTTACTTTGGCGGGTTTGTCTGTCCAGTATTTCCGT 503
|| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 421 ACTTGGGGGAACCATCCCCGTATTTTTGCTTTGGCGGGTTTGTCTGTCGAGTATTTCCGC 480
Query 504 TATTATGATCCGAAGAGCCGAGGACTCGACTTCAAAGGCATGCTCGAGGATCTTGGCGCT 563
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 TACTATGATCCGAAGAGCCGAGGACTTGACTTCAAAGGCATGCTCGAGGATCTTGGCGCT 540
Query 564 GCACCTCCTGGAGCTATAGTGGTACTTCAAGCTTGTGCGCATAACCCCACAGGAGTTGAC 623
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 541 GCACCTCCTGGAGCTATAGTGGTACTTCAAGCTTGTGGGCATAACCCCACTGGAGTTGAC 600
Query 624 CCAACATTCGAACAATGGGAAAAGATTCGACGACTAGTGAGATCGAAAAGCTTATTACCT 683
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 601 CCAACATTCGAACAATGGGAACAGATTCGACGACTAGTGAGATCGAAAGGCTTATTACCC 660
Query 684 TTCTTTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACGCAGATGCACAAGCG 743
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 TTCTTTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACTCAGATGCACAAGCG 720
Query 744 GTTCGTATGTTTGTAGCCGATGGAGGTGAATGTTTGATAGCTCAAAGTTATGCCAAAAAT 803
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTTCGTATGTTTGTTGCCGATGGAGGTGAATGTTTGATAGCTCAAAGTTATGCCAAAAAT 780
Query 804 ATGGGCCTTTATGGGGAGCGTATTGGCTCTCTTACGATCGTATGCACATCAGAAGATGTC 863
||||| || |||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 781 ATGGGTCTCTATGGGGAGCGTATTGGCGCTCTTACCATTGTATGCACATCAGAAGATGTC 840
Query 864 GCTAAGAAAGTTGAGAACCAAGTGCTACTTGTTGTGAGGCCTATGTATCTTACACCACCT 923
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 GCTAAGAAAGTTGAGGACCAAGTGCTACTTGTTGTGAGGCCTATGTATCTTACCCCACCT 900
Query 924 ATTCATGGTGCATCTATTGTTGCCACAATTCTAAAAAACAGTGATATGTACAATGACTGG 983
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATTCATGGTGCATCAATTGTTGCCACAATTCTAAAAAACAGTGATATGTACAATGACTGG 960
Query 984 ACCATTGAGCTGAAAGGAATGGCTGACCGCATAATTAGCATGCGTCAACAGTTATATGCA 1043
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 961 ACAATTGAGCTGAAAGGAATGGCTGACCGCATAATTAGCATGCGTCAACAGTTATATGAA 1020
Query 1044 GCTCTAGAAGCTAGAGGAACACCTGGTGATTGGAGTCACATTATTAAACATATTGGGATG 1103
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCTATACAAGCTAGAGGAACACCTGGTGATTGGAGTCACATTATTAAACATATTGGGATG 1080
Query 1104 TTTACTTTTACCGGATTGAGTGAGGAGCAAGTTCGCTTGATGGCCAAAGAATATCACATT 1163
||||||||||| ||||| |||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 1081 TTTACTTTTACTGGATTAAGTGAGGAACAAGTTCACTTGATTGCCAAAGAATATCACATT 1140
Query 1164 TACATGACTTATGATGGGAGGATAAGCATGGCAAGTCTAAGTTCGAAGACAGTGCCTCAA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TACATGACTTATGATGGGAGGATAAGCATGGCAAGTCTAAGTTCGAAGACAGTGCCTCAA 1200
Query 1224 CTCGCTGATGCTATACATGCTGTTGTTACTCGCATCGCCTAATTAAATTTGCGATTCTGT 1283
|||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 1201 CTCGCTGATGCTATACATGCTGTTGTTACTCGCATCGCCTAA--A--TTTGCGATTATGT 1256
Query 1284 TCTTTTGTTGTTTAATTTATGAACACAATTAGAGAATAAAACTGCGTTCTTGGTTTACAT 1343
||||| ||||||| | |||||||||||| | |||||||||||||||||||||||||||
Sbjct 1257 TCTTT-GTTGTTT--T--ATGAACACAATTGGGGAATAAAACTGCGTTCTTGGTTTACAT 1311
Query 1344 TTAATAAGATAGCACAAAGAA 1364
|| |||||| |||||| ||||
Sbjct 1312 TTCATAAGAGAGCACATAGAA 1332
> Ahg941505 jgi|Araly1|941505|scaffold_602049.1
Length=1259
Score = 1044 bits (565), Expect = 0.0
Identities = 1028/1247 (82%), Gaps = 50/1247 (4%)
Strand=Plus/Plus
Query 44 TCTCATGAATTCCATCTTGTC-AAGCG-TCCTTCCTGCTCCCGAAGATCCTGTTCTCAGT 101
||| ||| ||||| |||| || || || | | || |||||||||||||||| ||||| ||
Sbjct 17 TCTAATGGATTCCGTCTTCTCTAA-CGTTGC-TCGTGCTCCCGAAGATCCTATTCTCGGT 74
Query 102 GTAATTTTTGCTT-GTAGAGATGATCCTAGTCCGGTTAAGTTGAATTTGAGCG-CAGGTA 159
|||| | |||||| | | ||||||||||||| |||||| | |||||| | | | |||
Sbjct 75 GTAACTGTTGCTTACAACA-ATGATCCTAGTCCCGTTAAGATCAATTTGGGTGTC-GGTG 132
Query 160 CCTATCGAACTGAGGAAGGAAAGCCTCTTGTTCTTGATGTTGTGAG-AAGAGCAGAGCAA 218
|||| |||||||||||||| ||||| || ||||||||||| ||| | ||| |||||||||
Sbjct 133 CCTACCGAACTGAGGAAGGGAAGCCCCTCGTTCTTGATGTGGTGCGTAAG-GCAGAGCAA 191
Query 219 CAGTTAGCCAACGA-CCTGTCTAGGGACAAGGAATATC-TTCCCCTCAATGG-ACTTCCT 275
| | | | || || || |||| ||| ||||||||| | ||||| | ||| | || ||
Sbjct 192 CTGCTCGTGAATGATCC-GTCTCGGGTCAAGGAATA-CATTCCCATTGTTGGTA-TTGCT 248
Query 276 GAATTTAATAAATTAAGTACCAAGCTCATCTTAGGTGATGATAGTCCTGCATTGAAAGAG 335
|| ||||| || |||| |||||||||||||||||| ||| ||||||||| | ||||||
Sbjct 249 GATTTTAACAAGCTAAGCGCCAAGCTCATCTTAGGTGCTGACAGTCCTGCAATCAAAGAG 308
Query 336 AATAGAGTTGTTACAACCCAATGTTTGTCTGGTACTGGTTCTTTGAGAGTTGGAGCTGAG 395
|||||||||| ||| | ||| || ||||||||||||||||| ||||||||||| ||||||
Sbjct 309 AATAGAGTTGCTACCATCCAGTGCTTGTCTGGTACTGGTTCCTTGAGAGTTGGGGCTGAG 368
Query 396 TTTCT-AGCAACACACAACAAAGAAAGTGTCATTTTCGTTCCAAACCCAACGTGGGGGAA 454
||||| | || |||| || | || ||||||||| | ||||||| ||||| ||||||||
Sbjct 369 TTTCTCA-AAAAACACTACCACCAAGGTGTCATTTACATTCCAAAACCAACTTGGGGGAA 427
Query 455 CCATCCCCGTA-TTTT-TACTTTGGCGGGTTTGTCTGTCCAGTATTTCCGTTATTATGAT 512
|||| || | |||| || |||| || |||||||| |||||||||| || ||||||
Sbjct 428 CCAT-CCAAAAGTTTTCAAC-CTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGAT 485
Query 513 CC-GAAGAGCCGAGGACTCGACTTCAAAGGCATGCTCGAGGATCTTGGCGCTGCACC-TC 570
|| | | | ||| || || |||||||||||| ||||||||||||||||||||||||| |
Sbjct 486 CCTGCA-ACCCGTGGTCTTGACTTCAAAGGCTTGCTCGAGGATCTTGGCGCTGCACCAT- 543
Query 571 CTGGAGCTATAGTGGTACTTCAAGCTTGTGCGCATAACCCCACAGGAGTTGACCCAACAT 630
|||||||||| || ||||||| || ||||| || || ||||| |||||||||||||| |
Sbjct 544 CTGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAAC-T 602
Query 631 TC-GAACAATGGGAAAAGATTCGACGA-CTAGTGAGATCGAAAAGCTTATTA-CCTTTCT 687
|| ||||| |||||| ||||||||| | ||| ||||||| |||||||||||| ||||| |
Sbjct 603 TCTGAACAGTGGGAACAGATTCGAC-AGCTAATGAGATCTAAAAGCTTATTACCCTTT-T 660
Query 688 TTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACGCAGATGCACAAG-CGGTT 746
|||||||||||||||||||||||||||||||||| |||||| |||||||||| | | ||
Sbjct 661 TTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGTCTTGACACAGATGCACA-GTCTGTC 719
Query 747 CGTA-TGTTTGTAGCCGATGGAGGTGAATGTTTGATAGCTCAAAGTTATGCCAAAAATAT 805
|||| | ||||| || ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 720 CGTACT-TTTGTTGCTGATGGTGGTGAATGCTTGATAGCTCAAAGTTATGCCAAAAATAT 778
Query 806 GGGCCTTTATGGGGAGCGTATTGGCT-CTCTTA-CGATCGTATGCACA-TCAGAAGATGT 862
||| || |||||||| ||| |||| | | |||| | || || |||| | || | ||||||
Sbjct 779 GGGACTCTATGGGGAACGTGTTGG-TGCCCTTAGC-ATTGTCTGCA-AGTCGGCAGATGT 835
Query 863 CGCTAAGAAAG-TTGAGAACCAAGTGCTACTTGTTGTGAGGCCTATGTA-TCTTA-CACC 919
|||| | ||| |||||| ||| ||| |||||||||| | || ||||| || | | ||
Sbjct 836 GGCTA-GTAAGGTTGAGAGCCAGGTGAAACTTGTTGTGCGACCCATGTACTCG-AGC-CC 892
Query 920 ACCTATTCATGGTGCATCTATTGTTGCCACAATTCTAAAAAACAGTGATATGTACAATGA 979
|||||||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||| |
Sbjct 893 ACCTATTCATGGAGCATCAATTGTTGCCACCATTCTGAAAAGCAGTGATATGTACAACAA 952
Query 980 CTGGACCATTGAGCTGAAAGGAATGGCTGACCGCATAATTAGCATGCGTCAACAGTTATA 1039
||||||||| ||| |||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 953 CTGGACCATCGAGTTGAAAGAAATGGCTGACCGCATAAAGAGCATGCGCCAACAGTTATT 1012
Query 1040 TGCAGCTCTAGAAGCTAGAGGAACACCTGGTGATTGGAGTCACATTATTAAACATATTGG 1099
|| |||| || |||||||||| ||||||||||| |||||||||||||| ||||| || ||
Sbjct 1013 TGAAGCTATACAAGCTAGAGGCACACCTGGTGACTGGAGTCACATTATCAAACAGATCGG 1072
Query 1100 GATGTTTACTTTTACCGGATTGAGTGAGGAGCAAGTTCGC-TTGATGGCCAAAGAATATC 1158
||||||||||||||||||||||| ||||||||||| | || ||| || |||| | ||
Sbjct 1073 GATGTTTACTTTTACCGGATTGAACAAGGAGCAAGTT-GAATTCATGACCCAAGAGTTTC 1131
Query 1159 ACATTTACATGACTTATGATGGGAGGATAAGCATGGCAAGTCTAAGTTCGAAGACAGTGC 1218
||||||||||||| | ||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct 1132 ACATTTACATGACCTCTGACGGGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGC 1191
Query 1219 CTCAACTCGCTGATGCTATACATGCTGTTGTTACTCGCATCGCCTAA 1265
|||| || || |||||||| ||||||| || || ||| ||| ||||
Sbjct 1192 CTCACCTTGCCGATGCTATGCATGCTGCAGTGACCCGCCTCGGCTAA 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55992660150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5